March 2022 - Observe-commits - mailman.cloud.codelutin.com

[Git][ultreiaio/ird-observe][develop] 7 commits: Contrôle sur l'heure d'activité sur le WS public en create et update - See...
by Tony CHEMIT (＠tchemit) March 10, 2022

March 10, 2022

Tony CHEMIT pushed to branch develop at ultreiaio / ird-observe Commits: 714e0960 by Tony Chemit at 2022-03-10T15:26:01+01:00 Contrôle sur l'heure d'activité sur le WS public en create et update - See ultreiaio/ird-observe#2203 - - - - - 67dd54b1 by Tony Chemit at 2022-03-10T15:26:01+01:00 Ne plus retourner le contenu en erreur de validation dans l'API publique - Closes ultreiaio/ird-observe#2204 - - - - - 7fbd3feb by Tony Chemit at 2022-03-10T15:26:01+01:00 Fix some minor API - See ultreiaio/validation#5 - - - - - 0a7ccda6 by Tony Chemit at 2022-03-10T15:26:01+01:00 Les trois formulaires Calée ont perdu le reset - Closes #2205 - - - - - 2759e180 by Tony Chemit at 2022-03-10T15:26:01+01:00 Le classement des bateaux pourrait se faire sur les noms - See ultreiaio/ird-observe#2194 - - - - - 71bc9c3c by Tony Chemit at 2022-03-10T15:26:01+01:00 update pom - - - - - 8da5c705 by Tony Chemit at 2022-03-10T16:07:06+01:00 Amélioration de la documentation de l'API publique pour voir les types de date utilisés - See ultreiaio/ird-observe#2206 - - - - - 30 changed files: - client/core/src/main/java/fr/ird/observe/client/datasource/validation/ObserveSwingValidator.java - client/datasource/editor/ll/src/main/java/fr/ird/observe/client/datasource/editor/ll/data/common/TripUIHandler.java - client/datasource/editor/ll/src/main/java/fr/ird/observe/client/datasource/editor/ll/data/logbook/SetUI.jcss - client/datasource/editor/ll/src/main/java/fr/ird/observe/client/datasource/editor/ll/data/observation/SetUI.jcss - client/datasource/editor/ps/src/main/java/fr/ird/observe/client/datasource/editor/ps/data/common/TripUIHandler.java - client/datasource/editor/ps/src/main/java/fr/ird/observe/client/datasource/editor/ps/data/observation/SetUI.jcss - core/api/dto/src/main/i18n/getters/java.getter - core/api/dto/src/main/java/fr/ird/observe/dto/data/ps/logbook/ActivityDto.java - core/api/dto/src/main/java/fr/ird/observe/dto/data/ps/logbook/ActivityStubDto.java - + core/api/dto/src/main/java/fr/ird/observe/dto/data/ps/logbook/TimeAndNumberAware.java - + core/api/dto/src/main/java/fr/ird/observe/spi/validation/validators/ps/logbook/ActivityTimeFieldDtoValidator.java - + core/api/dto/src/main/java/fr/ird/observe/spi/validation/validators/ps/logbook/RouteActivityTimeFieldDtoValidator.java - core/api/dto/src/test/resources/fixtures/api.properties - core/api/validation/src/main/resources/validators.xml - core/api/validation/src/main/validation/fr/ird/observe/dto/data/ll/common/TripDto-update-error-validation.xml - core/api/validation/src/main/validation/fr/ird/observe/dto/data/ps/common/TripDto-update-error-validation.xml - core/api/validation/src/main/validation/fr/ird/observe/dto/data/ps/logbook/ActivityDto-create-error-validation.xml - core/api/validation/src/main/validation/fr/ird/observe/dto/data/ps/logbook/ActivityDto-update-error-validation.xml - core/api/validation/src/main/validation/fr/ird/observe/dto/data/ps/logbook/RouteDto-update-error-validation.xml - core/api/validation/src/main/validation/fr/ird/observe/dto/data/ps/observation/RouteDto-update-error-validation.xml - core/persistence/java/src/test/resources/fixtures/persistence.properties - core/persistence/resources/src/main/resources/fr/ird/observe/entities/data/ll/common/GearUseFeatures/definition.json - core/persistence/resources/src/main/resources/fr/ird/observe/entities/data/ll/common/GearUseFeaturesMeasurement/definition.json - core/persistence/resources/src/main/resources/fr/ird/observe/entities/data/ll/common/Trip/definition.json - core/persistence/resources/src/main/resources/fr/ird/observe/entities/data/ll/landing/Landing/definition.json - core/persistence/resources/src/main/resources/fr/ird/observe/entities/data/ll/landing/LandingPart/definition.json - core/persistence/resources/src/main/resources/fr/ird/observe/entities/data/ll/logbook/Activity/definition.json - core/persistence/resources/src/main/resources/fr/ird/observe/entities/data/ll/logbook/ActivitySample/definition.json - core/persistence/resources/src/main/resources/fr/ird/observe/entities/data/ll/logbook/BaitsComposition/definition.json - core/persistence/resources/src/main/resources/fr/ird/observe/entities/data/ll/logbook/BranchlinesComposition/definition.json The diff was not included because it is too large. View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/7bea0dcd0ca621943f0b6b51… -- View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/7bea0dcd0ca621943f0b6b51… You're receiving this email because of your account on gitlab.com.

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[Git][ultreiaio/ird-observe][develop] 6 commits: Contrôle sur l'heure d'activité sur le WS public en create et update - See...
by Tony CHEMIT (＠tchemit) March 10, 2022

March 10, 2022

Tony CHEMIT pushed to branch develop at ultreiaio / ird-observe Commits: 76b5dadd by Tony Chemit at 2022-03-10T03:13:29+01:00 Contrôle sur l'heure d'activité sur le WS public en create et update - See ultreiaio/ird-observe#2203 - - - - - 4e496788 by Tony Chemit at 2022-03-10T03:13:29+01:00 Ne plus retourner le contenu en erreur de validation dans l'API publique - Closes ultreiaio/ird-observe#2204 - - - - - 4133a055 by Tony Chemit at 2022-03-10T03:13:29+01:00 Fix some minor API - See ultreiaio/validation#5 - - - - - 2415183c by Tony Chemit at 2022-03-10T03:13:29+01:00 Les trois formulaires Calée ont perdu le reset - Closes #2205 - - - - - ea7dd98b by Tony Chemit at 2022-03-10T04:01:56+01:00 Le classement des bateaux pourrait se faire sur les noms - See ultreiaio/ird-observe#2194 - - - - - 7bea0dcd by Tony Chemit at 2022-03-10T04:10:48+01:00 update pom - - - - - 30 changed files: - client/core/src/main/java/fr/ird/observe/client/datasource/validation/ObserveSwingValidator.java - client/datasource/editor/ll/src/main/java/fr/ird/observe/client/datasource/editor/ll/data/logbook/SetUI.jcss - client/datasource/editor/ll/src/main/java/fr/ird/observe/client/datasource/editor/ll/data/observation/SetUI.jcss - client/datasource/editor/ps/src/main/java/fr/ird/observe/client/datasource/editor/ps/data/observation/SetUI.jcss - + core/api/dto/src/main/java/fr/ird/observe/spi/validation/validators/ps/logbook/ActivityTimeFieldDtoValidator.java - + core/api/dto/src/main/java/fr/ird/observe/spi/validation/validators/ps/logbook/RouteActivityTimeFieldDtoValidator.java - core/api/validation/src/main/resources/validators.xml - core/api/validation/src/main/validation/fr/ird/observe/dto/data/ll/common/TripDto-update-error-validation.xml - core/api/validation/src/main/validation/fr/ird/observe/dto/data/ps/common/TripDto-update-error-validation.xml - core/api/validation/src/main/validation/fr/ird/observe/dto/data/ps/logbook/ActivityDto-create-error-validation.xml - core/api/validation/src/main/validation/fr/ird/observe/dto/data/ps/logbook/ActivityDto-update-error-validation.xml - core/api/validation/src/main/validation/fr/ird/observe/dto/data/ps/logbook/RouteDto-update-error-validation.xml - core/api/validation/src/main/validation/fr/ird/observe/dto/data/ps/observation/RouteDto-update-error-validation.xml - core/persistence/java/src/main/java/fr/ird/observe/entities/data/ll/common/TripGroupByReferentialHelper.java - core/persistence/java/src/main/java/fr/ird/observe/entities/data/ps/common/TripGroupByReferentialHelper.java - core/persistence/resources/src/main/resources/fr/ird/observe/entities/data/ps/logbook/Activity/validation-create.json - core/persistence/resources/src/main/resources/fr/ird/observe/entities/data/ps/logbook/Activity/validation-update.json - core/services/i18n/src/main/i18n/translations/services_en_GB.properties - core/services/i18n/src/main/i18n/translations/services_es_ES.properties - core/services/i18n/src/main/i18n/translations/services_fr_FR.properties - core/services/local/src/main/java/fr/ird/observe/services/local/service/ObserveServiceLocal.java - core/services/local/src/main/java/fr/ird/observe/services/local/service/api/DataEntityServiceLocalSupport.java - core/services/local/src/main/java/fr/ird/observe/services/local/service/api/ReferentialEntityServiceLocalSupport.java - core/services/local/src/test/java/fr/ird/observe/services/local/service/api/DataEntityServiceLocalWriteTest.java - + core/services/test/src/main/resources/fixtures/fr/ird/observe/services/service/data/ps/common/TripService-issue2196-notValid.json - pom.xml - server/runner/src/main/webResources/doc/api/public/data/ll/common/Trip/validation-update-error.xml - server/runner/src/main/webResources/doc/api/public/data/ps/common/Trip/validation-update-error.xml - server/runner/src/main/webResources/doc/api/public/data/ps/logbook/Activity/validation-create-error.xml - server/runner/src/main/webResources/doc/api/public/data/ps/logbook/Activity/validation-create.json The diff was not included because it is too large. View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/5645462acceb5a3a0a96e0ef… -- View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/5645462acceb5a3a0a96e0ef… You're receiving this email because of your account on gitlab.com.

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[Git][ultreiaio/ird-observe][develop] 2 commits: Contrôle sur l'heure d'activité sur le WS public en create et update - See...
by Tony CHEMIT (＠tchemit) March 9, 2022

March 9, 2022

Tony CHEMIT pushed to branch develop at ultreiaio / ird-observe Commits: d2b370e7 by Tony Chemit at 2022-03-09T23:16:19+01:00 Contrôle sur l'heure d'activité sur le WS public en create et update - See ultreiaio/ird-observe#2203 - - - - - 5645462a by Tony Chemit at 2022-03-09T23:40:16+01:00 Ne plus retourner le contenu en erreur de validation dans l'API publique - Closes ultreiaio/ird-observe#2204 - - - - - 3 changed files: - core/services/local/src/main/java/fr/ird/observe/services/local/service/ObserveServiceLocal.java - core/services/local/src/main/java/fr/ird/observe/services/local/service/api/DataEntityServiceLocalSupport.java - core/services/local/src/main/java/fr/ird/observe/services/local/service/api/ReferentialEntityServiceLocalSupport.java Changes: ===================================== core/services/local/src/main/java/fr/ird/observe/services/local/service/ObserveServiceLocal.java ===================================== @@ -35,6 +35,7 @@ import fr.ird.observe.dto.data.SimpleDto; import fr.ird.observe.dto.db.DataSourceValidationMode; import fr.ird.observe.dto.db.configuration.ObserveDataSourceInformation; import fr.ird.observe.dto.reference.DataDtoReference; +import fr.ird.observe.dto.reference.DtoReference; import fr.ird.observe.dto.reference.ReferentialDtoReference; import fr.ird.observe.dto.referential.ReferentialDto; import fr.ird.observe.dto.referential.ReferentialLocale; @@ -66,6 +67,7 @@ import fr.ird.observe.spi.ObservePersistenceBusinessProject; import fr.ird.observe.spi.context.ContainerDtoEntityContext; import fr.ird.observe.spi.context.DataDtoEntityContext; import fr.ird.observe.spi.context.DataGroupByReferentialHelper; +import fr.ird.observe.spi.context.DtoEntityContext; import fr.ird.observe.spi.context.EditableDtoEntityContext; import fr.ird.observe.spi.context.OpenableDtoEntityContext; import fr.ird.observe.spi.context.ReferentialDtoEntityContext; @@ -211,10 +213,10 @@ public abstract class ObserveServiceLocal implements ObserveService, ServiceCont @Override public final <D extends DataDto, - R extends DataDtoReference, - E extends DataEntity, - T extends ToolkitTopiaDao<E>> DataDtoEntityContext<D, R, E, T> fromDataEntity(E dtoType) { - return ObservePersistenceBusinessProject.fromDataEntity(dtoType); + R extends DtoReference, + E extends Entity, + T extends ToolkitTopiaDao<E>> DtoEntityContext<D, R, E, T> fromEntity(E dtoType) { + return ObservePersistenceBusinessProject.fromEntity(dtoType); } @Override @@ -379,10 +381,10 @@ public abstract class ObserveServiceLocal implements ObserveService, ServiceCont return serviceContext; } - protected ReferentialValidationRequest newReferentialValidationRequest(String validationContextName, Set<Class<? extends ReferentialDto>> referentialTypes) { + protected ReferentialValidationRequest newReferentialValidationRequest(Set<Class<? extends ReferentialDto>> referentialTypes) { ReferentialValidationRequest request = new ReferentialValidationRequest(); request.setScopes(new LinkedHashSet<>(List.of(NuitonValidatorScope.ERROR, NuitonValidatorScope.FATAL))); - request.setValidationContext(validationContextName); + request.setValidationContext(fr.ird.observe.spi.validation.ValidationContextSupport.UPDATE_VALIDATION_CONTEXT); request.setReferentialTypes(referentialTypes); return request; } @@ -391,15 +393,15 @@ public abstract class ObserveServiceLocal implements ObserveService, ServiceCont return DataSourceValidationMode.NONE == getValidationMode(); } - protected DataValidationRequest newDataValidationRequest(String validationContextName, String id) { + protected DataValidationRequest newDataValidationRequest(String id) { DataValidationRequest request = new DataValidationRequest(); request.setScopes(new LinkedHashSet<>(List.of(NuitonValidatorScope.ERROR, NuitonValidatorScope.FATAL))); - request.setValidationContext(validationContextName); + request.setValidationContext(fr.ird.observe.spi.validation.ValidationContextSupport.UPDATE_VALIDATION_CONTEXT); request.setDataIds(Set.of(id == null ? "__create" : id)); return request; } - protected final void checkValidationResult(String content, ValidationResult<?> result) throws InvalidDataException { + protected final void checkValidationResult(ValidationResult<?> result) throws InvalidDataException { Set<ValidationResultDto> data = result.getData(); if (data.isEmpty()) { return; @@ -415,7 +417,7 @@ public abstract class ObserveServiceLocal implements ObserveService, ServiceCont } } if (withError) { - String message = String.format("Invalid content:\n%s\n%s", content, newGsonSupplier(true, false).get().toJson(result)); + String message = String.format("Invalid content:\n%s", newGsonSupplier(true, false).get().toJson(result)); throw new InvalidDataException(message, result); } //FIXME We should may be return the result for warning messages? ===================================== core/services/local/src/main/java/fr/ird/observe/services/local/service/api/DataEntityServiceLocalSupport.java ===================================== @@ -34,7 +34,6 @@ import fr.ird.observe.services.local.service.ObserveServiceLocal; import fr.ird.observe.services.service.api.DataEntityService; import fr.ird.observe.services.service.api.InvalidDataException; import fr.ird.observe.spi.context.DataDtoEntityContext; -import fr.ird.observe.spi.validation.DtoValidationContext; import fr.ird.observe.spi.validation.ValidationHelper; import org.nuiton.topia.persistence.filter.OrderEnum; import org.nuiton.topia.persistence.filter.ToolkitRequestFilter; @@ -64,17 +63,15 @@ public class DataEntityServiceLocalSupport extends ObserveServiceLocal implement @Override public ToolkitId create(Class<? extends DataDto> dtoType, String content) throws InvalidDataException { - DataDtoEntityContext<?, ?, DataEntity, ?> spi = fromDataDto(dtoType); - return spi.create(this, content, withoutValidation() ? e -> { - } : e -> doValidate(DtoValidationContext.CREATE_VALIDATION_CONTEXT, content, e)); + DataDtoEntityContext<?, ?, ?, ?> spi = fromDataDto(dtoType); + return spi.create(this, content, this::doValidate); } @Override public ToolkitId update(Class<? extends DataDto> dtoType, String id, String content) throws InvalidDataException { id = ToolkitId.decodeId(id); - DataDtoEntityContext<?, ?, DataEntity, ?> spi = fromDataDto(dtoType); - return spi.update(this, id, content, withoutValidation() ? e -> { - } : e -> doValidate(DtoValidationContext.UPDATE_VALIDATION_CONTEXT, content, e)); + DataDtoEntityContext<?, ?, ?, ?> spi = fromDataDto(dtoType); + return spi.update(this, id, content, this::doValidate); } @Override @@ -84,11 +81,14 @@ public class DataEntityServiceLocalSupport extends ObserveServiceLocal implement spi.delete(this, id); } - protected <E extends DataEntity> void doValidate(String validationContextName, String content, E entity) throws InvalidDataException { + protected <E extends DataEntity> void doValidate(E entity) throws InvalidDataException { + if (withoutValidation()) { + return; + } //FIXME Must have this somewhere on server or request ValidationRequestConfiguration configuration = newValidationRequestConfiguration(true); - DataValidationRequest request = newDataValidationRequest(validationContextName, entity.getTopiaId()); + DataValidationRequest request = newDataValidationRequest(entity.getTopiaId()); DataValidationResult result = ValidationHelper.validateApiData(this, configuration, request, entity); - checkValidationResult(content, result); + checkValidationResult(result); } } ===================================== core/services/local/src/main/java/fr/ird/observe/services/local/service/api/ReferentialEntityServiceLocalSupport.java ===================================== @@ -44,7 +44,6 @@ import fr.ird.observe.spi.module.BusinessProjectVisitor; import fr.ird.observe.spi.module.BusinessReferentialPackage; import fr.ird.observe.spi.module.BusinessSubModule; import fr.ird.observe.spi.module.ObserveBusinessProject; -import fr.ird.observe.spi.validation.DtoValidationContext; import fr.ird.observe.spi.validation.ValidationHelper; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; @@ -124,25 +123,26 @@ public class ReferentialEntityServiceLocalSupport extends ObserveServiceLocal im @Override public ToolkitId create(Class<? extends ReferentialDto> dtoType, String content) throws InvalidDataException { ReferentialDtoEntityContext<?, ?, ?, ?> spi = fromReferentialDto(dtoType); - return spi.create(this, content, withoutValidation() ? e -> { - } : e -> doValidate(spi.toDtoType(), DtoValidationContext.CREATE_VALIDATION_CONTEXT, content, e)); + return spi.create(this, content, e -> doValidate(spi.toDtoType(), e)); } @Override public ToolkitId update(Class<? extends ReferentialDto> dtoType, String id, String content) throws InvalidDataException { id = ToolkitId.decodeId(id); ReferentialDtoEntityContext<?, ?, ?, ?> spi = fromReferentialDto(dtoType); - return spi.update(this, id, content, withoutValidation() ? e -> { - } : e -> doValidate(spi.toDtoType(), DtoValidationContext.CREATE_VALIDATION_CONTEXT, content, e)); + return spi.update(this, id, content, e -> doValidate(spi.toDtoType(), e)); } - protected <D extends ReferentialDto, E extends ReferentialEntity> void doValidate(Class<D> dtoType, String validationContextName, String content, E entity) throws InvalidDataException { + private <D extends ReferentialDto, E extends ReferentialEntity> void doValidate(Class<D> dtoType, E entity) throws InvalidDataException { + if (withoutValidation()) { + return; + } //FIXME Must have this somewhere on server or request ValidationRequestConfiguration configuration = newValidationRequestConfiguration(false); - ReferentialValidationRequest request = newReferentialValidationRequest(validationContextName, Set.of(dtoType)); + ReferentialValidationRequest request = newReferentialValidationRequest(Set.of(dtoType)); //FIXME What about the not persisted case ? See Data ReferentialValidationResult result = ValidationHelper.validateApiReferential(this, configuration, request, dtoType, entity); - checkValidationResult(content, result); + checkValidationResult(result); } protected ToolkitTreeNodeStates getByType(ToolkitRequestConfig config, Set<Class<? extends ReferentialDto>> dtoTypes) { View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/063d58011054af2808d44ef3… -- View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/063d58011054af2808d44ef3… You're receiving this email because of your account on gitlab.com.

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[Git][ultreiaio/ird-observe][develop] 3 commits: Erreur sur utilisation de PUT pour MAJ une marée - Closes #2196
by Tony CHEMIT (＠tchemit) March 9, 2022

March 9, 2022

Tony CHEMIT pushed to branch develop at ultreiaio / ird-observe Commits: 680658aa by Tony Chemit at 2022-03-09T19:12:08+01:00 Erreur sur utilisation de PUT pour MAJ une marée - Closes #2196 - - - - - 3209f8b6 by Tony Chemit at 2022-03-09T20:34:28+01:00 add FIXME log but no trouble with swingx errors :( Little clean in status widget (should be rethink poor code) - Closes ultreiaio/jaxx#826 - - - - - 063d5801 by Tony Chemit at 2022-03-09T21:28:38+01:00 Le changement de l'heure ne fire pas le bouton Enregistrer - Closes #2201 Le changement d'heure n'est pas enregistré - Closes #2202 - - - - - 6 changed files: - client/core/src/main/java/fr/ird/observe/client/ErrorHandler.java - core/persistence/java/src/main/java/fr/ird/observe/spi/validation/SetFakeIdsEntityVisitor.java - core/persistence/java/src/main/java/fr/ird/observe/spi/validation/ValidationHelper.java - core/services/local/src/test/java/fr/ird/observe/services/local/service/api/DataEntityServiceLocalWriteTest.java - + core/services/test/src/main/resources/fixtures/fr/ird/observe/services/service/data/ps/common/TripService-issue2196.json - pom.xml Changes: ===================================== client/core/src/main/java/fr/ird/observe/client/ErrorHandler.java ===================================== @@ -49,6 +49,12 @@ public abstract class ErrorHandler implements Thread.UncaughtExceptionHandler, W @Override public void uncaughtException(Thread t, Throwable e) { + StackTraceElement[] stackTrace = e.getStackTrace(); + if (stackTrace.length > 0 && stackTrace[0].getClassName().startsWith("javax.swing.plaf")) { + //FIXME + log.error("Swing error", e); + return; + } if (e instanceof InvalidAuthenticationTokenException || containsExceptionInStack(e, InvalidAuthenticationTokenException.class)) { onInvalidAuthenticationTokenException(); return; @@ -102,4 +108,24 @@ public abstract class ErrorHandler implements Thread.UncaughtExceptionHandler, W } return false; } + + + protected <E extends Throwable> boolean containsExceptionInStack2(Throwable e, Class<E> type) { + if (e == null) { + return false; + } + if (type.isInstance(e)) { + return true; + } + if (e instanceof HResponseErrorException) { + return containsExceptionInStack(((HResponseErrorException) e).getError().getException(), type); + } + while (e.getCause() != null) { + e = e.getCause(); + if (type.isInstance(e)) { + return true; + } + } + return false; + } } ===================================== core/persistence/java/src/main/java/fr/ird/observe/spi/validation/SetFakeIdsEntityVisitor.java ===================================== @@ -22,7 +22,6 @@ package fr.ird.observe.spi.validation; * #L% */ -import fr.ird.observe.entities.data.DataEntity; import org.nuiton.topia.persistence.TopiaEntity; import org.nuiton.topia.persistence.TopiaEntityVisitor; @@ -44,10 +43,10 @@ public class SetFakeIdsEntityVisitor implements TopiaEntityVisitor { private final AtomicLong fakeId = new AtomicLong(); private final Set<TopiaEntity> explored = new LinkedHashSet<>(); - public <E extends DataEntity> void removeIds(E entity) { + public void removeIds() { explored.forEach(e -> { if (e.getTopiaId().startsWith(CREATE)) { - entity.setTopiaId(null); + e.setTopiaId(null); } }); } ===================================== core/persistence/java/src/main/java/fr/ird/observe/spi/validation/ValidationHelper.java ===================================== @@ -66,12 +66,9 @@ public class ValidationHelper { public static <E extends DataEntity> DataValidationResult validateApiData(ServiceContext context, ValidationRequestConfiguration configuration, DataValidationRequest request, E entity) { Future<DataValidationResult> future = context.submit(() -> { - SetFakeIdsEntityVisitor idVisitor = null; - boolean notPersisted = entity.isNotPersisted(); - if (notPersisted) { - idVisitor = new SetFakeIdsEntityVisitor(); - entity.accept(idVisitor); - } + // Always scan to add for none persistence data + SetFakeIdsEntityVisitor idVisitor = new SetFakeIdsEntityVisitor(); + entity.accept(idVisitor); try (ServiceValidationContext validationContext = (ServiceValidationContext) context.createServiceValidationContext(configuration, request)) { ReferentialLocale referentialLocale = context.getReferentialLocale(); DataValidationResult.Builder<DataValidationRequest, DataValidationResult> resultBuilder = DataValidationResult.builder(referentialLocale, request); @@ -81,9 +78,7 @@ public class ValidationHelper { try { validateData(detector, validationContext, entity, species); } finally { - if (idVisitor != null) { - idVisitor.removeIds(entity); - } + idVisitor.removeIds(); } return resultBuilder.build(); } ===================================== core/services/local/src/test/java/fr/ird/observe/services/local/service/api/DataEntityServiceLocalWriteTest.java ===================================== @@ -107,6 +107,24 @@ public class DataEntityServiceLocalWriteTest extends GeneratedDataEntityServiceL } } + @Test + @CopyDatabaseConfiguration + @DatabaseNameConfiguration(DatabaseName.referential) + public void createPsTrip_2196() throws InvalidDataException { + String classifier = "issue2196"; + Map<?, ?> tripMap = assertCreateTrip0(fr.ird.observe.services.service.data.ps.common.TripService.class, + fr.ird.observe.dto.data.ps.common.TripDto.class, classifier); + + Assert.assertNotNull(tripMap); + String id = (String) tripMap.get(ToolkitId.PROPERTY_TOOLKIT_TOPIA_ID); + Assert.assertNotNull(id); + + Map<String, Object> resultObject = assertUpdateTrip0(fr.ird.observe.services.service.data.ps.common.TripService.class, + fr.ird.observe.dto.data.ps.common.TripDto.class, id, classifier); + Assert.assertNotNull(resultObject); + } + + @Test @CopyDatabaseConfiguration @DatabaseNameConfiguration(DatabaseName.referential) ===================================== core/services/test/src/main/resources/fixtures/fr/ird/observe/services/service/data/ps/common/TripService-issue2196.json ===================================== @@ -0,0 +1,2183 @@ +{ + "homeId": "109", + "startDate": "2021-02-05T00:00:00.000Z", + "endDate": "2021-03-05T00:00:00.000Z", + "historicalData": false, + "ocean": "fr.ird.referential.common.Ocean#1239832686151#0.17595105505051245", + "generalComment": "NB: fp consignataire cmb abidjan=19,3T", + "observationsComment": null, + "routeLogbook": [ + { + "date": "2021-02-05T00:00:00.000Z", + "activity": [ + { + "time": "2021-02-05T18:45:00.000Z", + "latitude": -3.4, + "longitude": 56.11, + "latitudeOriginal": null, + "longitudeOriginal": null, + "originalDataModified": false, + "vmsDivergent": false, + "positionCorrected": false, + "number": 1, + "setCount": 0, + "setSuccessStatus": "fr.ird.referential.ps.logbook.SetSuccessStatus#1464000000000#02", + "seaSurfaceTemperature": null, + "windDirection": null, + "vesselActivity": "fr.ird.referential.ps.common.VesselActivity#1239832675372#0.43920247699937853", + "totalWeight": null, + "catches": [], + "floatingObject": [], + "observedSystem": [ + "fr.ird.referential.ps.common.ObservedSystem#1239832686428#0.6854047537933218", + "fr.ird.referential.ps.common.ObservedSystem#0#1.2" + ], + "comment": "ras" + } + ] + }, + { + "date": "2021-02-06T00:00:00.000Z", + "activity": [ + { + "time": "2021-02-06T08:05:00.000Z", + "latitude": -1.86, + "longitude": 58.68, + "latitudeOriginal": null, + "longitudeOriginal": null, + "originalDataModified": false, + "vmsDivergent": false, + "positionCorrected": false, + "number": 1, + "setCount": 0, + "setSuccessStatus": "fr.ird.referential.ps.logbook.SetSuccessStatus#1464000000000#00", + "seaSurfaceTemperature": 28.0, + "windDirection": 310.0, + "vesselActivity": "fr.ird.referential.ps.common.VesselActivity#1239832675370#0.9125190289998782", + "totalWeight": 20.0, + "catches": [ + { + "comment": "qa", + "species": "fr.ird.referential.common.Species#1239832685474#0.8943253454598569", + "weightCategory": "fr.ird.referential.ps.common.WeightCategory#1464000000000#1014", + "speciesFate": "fr.ird.referential.ps.common.SpeciesFate#1239832683619#0.5722739932065866", + "weight": 1.0, + "weightMeasureMethod": "fr.ird.referential.common.WeightMeasureMethod#666#03" + }, + { + "comment": "qa", + "species": "fr.ird.referential.common.Species#1239832685474#0.975344121171992", + "weightCategory": "fr.ird.referential.ps.common.WeightCategory#1464000000000#1014", + "speciesFate": "fr.ird.referential.ps.common.SpeciesFate#1239832683619#0.5722739932065866", + "weight": 14.0, + "weightMeasureMethod": "fr.ird.referential.common.WeightMeasureMethod#666#03" + }, + { + "comment": "qa", + "species": "fr.ird.referential.common.Species#1239832685475#0.13349466123905152", + "weightCategory": "fr.ird.referential.ps.common.WeightCategory#1464000000000#1014", + "speciesFate": "fr.ird.referential.ps.common.SpeciesFate#1239832683619#0.5722739932065866", + "weight": 5.0, + "weightMeasureMethod": "fr.ird.referential.common.WeightMeasureMethod#666#03" + } + ], + "floatingObject": [], + "observedSystem": [ + "fr.ird.referential.ps.common.ObservedSystem#1239832686428#0.6854047537933218", + "fr.ird.referential.ps.common.ObservedSystem#0#1.2" + ], + "comment": "transfert radeau esp avec péche" + }, + { + "time": "2021-02-06T17:00:00.000Z", + "latitude": -1.43, + "longitude": 59.95, + "latitudeOriginal": null, + "longitudeOriginal": null, + "originalDataModified": false, + "vmsDivergent": false, + "positionCorrected": false, + "number": 2, + "setCount": 0, + "setSuccessStatus": "fr.ird.referential.ps.logbook.SetSuccessStatus#1464000000000#00", + "seaSurfaceTemperature": 28.0, + "windDirection": 310.0, + "vesselActivity": "fr.ird.referential.ps.common.VesselActivity#1239832675370#0.9125190289998782", + "totalWeight": null, + "catches": [], + "floatingObject": [], + "observedSystem": [ + "fr.ird.referential.ps.common.ObservedSystem#1239832686428#0.6854047537933218", + "fr.ird.referential.ps.common.ObservedSystem#0#1.2" + ], + "comment": "radeau mouillé" + } + ] + }, + { + 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"fr.ird.referential.ps.common.VesselActivity#1239832675370#0.9125190289998782", + "totalWeight": null, + "catches": [], + "floatingObject": [], + "observedSystem": [ + "fr.ird.referential.ps.common.ObservedSystem#1239832686428#0.6854047537933218", + "fr.ird.referential.ps.common.ObservedSystem#0#1.2" + ], + "comment": "désactiver" + } + ] + } + ], + "vessel": "fr.ird.referential.common.Vessel#1410252863416#0.7916424272095569", + "logbookProgram": "fr.ird.referential.ps.common.Program#1239832686262#0.42751447061198444", + "observationsProgram": null, + "observer": null, + "captain": "fr.ird.referential.common.Person#1254317601353#0.6617065204572095", + "logbookDataEntryOperator": "fr.ird.referential.common.Person#1254317601353#0.6617065204572095", + "observationsDataEntryOperator": null, + "departureHarbour": "fr.ird.referential.common.Harbour#11#0.41", + "landingHarbour": "fr.ird.referential.common.Harbour#11#0.41", + "logbookDataQuality": "fr.ird.referential.common.DataQuality#0#5", + "departureWellContentStatus": "fr.ird.referential.ps.logbook.WellContentStatus#1464000000000#03", + "landingWellContentStatus": "fr.ird.referential.ps.logbook.WellContentStatus#1464000000000#03", + "observationsAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#099", + "logbookAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#001", + "targetWellsSamplingAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#999", + "landingAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#999", + "localMarketAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#999", + "localMarketWellsSamplingAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#999", + "localMarketSurveySamplingAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#999", + "advancedSamplingAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#999", + "loch": 4481, + "logbookComment": "NB: fp consignataire cmb abidjan=19,3T" +} \ No newline at end of file ===================================== pom.xml ===================================== @@ -23,7 +23,7 @@ <parent> <groupId>io.ultreia.maven</groupId> <artifactId>pom</artifactId> - <version>2022.30</version> + <version>2022.31</version> </parent> <groupId>fr.ird.observe</groupId> <artifactId>ird-observe</artifactId> @@ -121,7 +121,6 @@ </site> </distributionManagement> <properties> - <lib.version.java4all.topia>1.69-SNAPSHOT</lib.version.java4all.topia> <organizationId>ultreiaio</organizationId> <projectId>ird-observe</projectId> <stageId>frirdobserve</stageId> View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/9c95c3481d85ef16dc488ecb… -- View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/9c95c3481d85ef16dc488ecb… You're receiving this email because of your account on 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[Git][ultreiaio/ird-observe][develop] Erreur sur utilisation de PUT pour MAJ une marée - Closes #2196
by Tony CHEMIT (＠tchemit) March 9, 2022

March 9, 2022

Tony CHEMIT pushed to branch develop at ultreiaio / ird-observe Commits: 9c95c348 by Tony Chemit at 2022-03-09T18:59:55+01:00 Erreur sur utilisation de PUT pour MAJ une marée - Closes #2196 - - - - - 4 changed files: - core/persistence/java/src/main/java/fr/ird/observe/spi/validation/SetFakeIdsEntityVisitor.java - core/persistence/java/src/main/java/fr/ird/observe/spi/validation/ValidationHelper.java - core/services/local/src/test/java/fr/ird/observe/services/local/service/api/DataEntityServiceLocalWriteTest.java - + core/services/test/src/main/resources/fixtures/fr/ird/observe/services/service/data/ps/common/TripService-issue2196.json Changes: ===================================== core/persistence/java/src/main/java/fr/ird/observe/spi/validation/SetFakeIdsEntityVisitor.java ===================================== @@ -44,10 +44,10 @@ public class SetFakeIdsEntityVisitor implements TopiaEntityVisitor { private final AtomicLong fakeId = new AtomicLong(); private final Set<TopiaEntity> explored = new LinkedHashSet<>(); - public <E extends DataEntity> void removeIds(E entity) { + public void removeIds() { explored.forEach(e -> { if (e.getTopiaId().startsWith(CREATE)) { - entity.setTopiaId(null); + e.setTopiaId(null); } }); } ===================================== core/persistence/java/src/main/java/fr/ird/observe/spi/validation/ValidationHelper.java ===================================== @@ -66,12 +66,9 @@ public class ValidationHelper { public static <E extends DataEntity> DataValidationResult validateApiData(ServiceContext context, ValidationRequestConfiguration configuration, DataValidationRequest request, E entity) { Future<DataValidationResult> future = context.submit(() -> { - SetFakeIdsEntityVisitor idVisitor = null; - boolean notPersisted = entity.isNotPersisted(); - if (notPersisted) { - idVisitor = new SetFakeIdsEntityVisitor(); - entity.accept(idVisitor); - } + // Always scan to add for none persistence data + SetFakeIdsEntityVisitor idVisitor = new SetFakeIdsEntityVisitor(); + entity.accept(idVisitor); try (ServiceValidationContext validationContext = (ServiceValidationContext) context.createServiceValidationContext(configuration, request)) { ReferentialLocale referentialLocale = context.getReferentialLocale(); DataValidationResult.Builder<DataValidationRequest, DataValidationResult> resultBuilder = DataValidationResult.builder(referentialLocale, request); @@ -81,9 +78,7 @@ public class ValidationHelper { try { validateData(detector, validationContext, entity, species); } finally { - if (idVisitor != null) { - idVisitor.removeIds(entity); - } + idVisitor.removeIds(); } return resultBuilder.build(); } ===================================== core/services/local/src/test/java/fr/ird/observe/services/local/service/api/DataEntityServiceLocalWriteTest.java ===================================== @@ -107,6 +107,24 @@ public class DataEntityServiceLocalWriteTest extends GeneratedDataEntityServiceL } } + @Test + @CopyDatabaseConfiguration + @DatabaseNameConfiguration(DatabaseName.referential) + public void createPsTrip_2196() throws InvalidDataException { + String classifier = "issue2196"; + Map<?, ?> tripMap = assertCreateTrip0(fr.ird.observe.services.service.data.ps.common.TripService.class, + fr.ird.observe.dto.data.ps.common.TripDto.class, classifier); + + Assert.assertNotNull(tripMap); + String id = (String) tripMap.get(ToolkitId.PROPERTY_TOOLKIT_TOPIA_ID); + Assert.assertNotNull(id); + + Map<String, Object> resultObject = assertUpdateTrip0(fr.ird.observe.services.service.data.ps.common.TripService.class, + fr.ird.observe.dto.data.ps.common.TripDto.class, id, classifier); + Assert.assertNotNull(resultObject); + } + + @Test @CopyDatabaseConfiguration @DatabaseNameConfiguration(DatabaseName.referential) ===================================== core/services/test/src/main/resources/fixtures/fr/ird/observe/services/service/data/ps/common/TripService-issue2196.json ===================================== @@ -0,0 +1,2183 @@ +{ + "homeId": "109", + "startDate": "2021-02-05T00:00:00.000Z", + "endDate": "2021-03-05T00:00:00.000Z", + "historicalData": false, + "ocean": "fr.ird.referential.common.Ocean#1239832686151#0.17595105505051245", + "generalComment": "NB: fp consignataire cmb abidjan=19,3T", + "observationsComment": null, + "routeLogbook": [ + { + "date": "2021-02-05T00:00:00.000Z", + "activity": [ + { + "time": "2021-02-05T18:45:00.000Z", + "latitude": -3.4, + "longitude": 56.11, + "latitudeOriginal": null, + "longitudeOriginal": null, + "originalDataModified": false, + "vmsDivergent": false, + "positionCorrected": false, + "number": 1, + "setCount": 0, + "setSuccessStatus": "fr.ird.referential.ps.logbook.SetSuccessStatus#1464000000000#02", + "seaSurfaceTemperature": null, + "windDirection": null, + "vesselActivity": "fr.ird.referential.ps.common.VesselActivity#1239832675372#0.43920247699937853", + "totalWeight": null, + "catches": [], + "floatingObject": [], + "observedSystem": [ + "fr.ird.referential.ps.common.ObservedSystem#1239832686428#0.6854047537933218", + "fr.ird.referential.ps.common.ObservedSystem#0#1.2" + ], + "comment": "ras" + } + ] + }, + { + "date": "2021-02-06T00:00:00.000Z", + "activity": [ + { + "time": "2021-02-06T08:05:00.000Z", + "latitude": -1.86, + "longitude": 58.68, + "latitudeOriginal": null, + "longitudeOriginal": null, + "originalDataModified": false, + "vmsDivergent": false, + "positionCorrected": false, + "number": 1, + "setCount": 0, + "setSuccessStatus": "fr.ird.referential.ps.logbook.SetSuccessStatus#1464000000000#00", + "seaSurfaceTemperature": 28.0, + "windDirection": 310.0, + "vesselActivity": "fr.ird.referential.ps.common.VesselActivity#1239832675370#0.9125190289998782", + "totalWeight": 20.0, + "catches": [ + { + "comment": "qa", + "species": "fr.ird.referential.common.Species#1239832685474#0.8943253454598569", + "weightCategory": "fr.ird.referential.ps.common.WeightCategory#1464000000000#1014", + "speciesFate": "fr.ird.referential.ps.common.SpeciesFate#1239832683619#0.5722739932065866", + "weight": 1.0, + "weightMeasureMethod": "fr.ird.referential.common.WeightMeasureMethod#666#03" + }, + { + "comment": "qa", + "species": "fr.ird.referential.common.Species#1239832685474#0.975344121171992", + "weightCategory": "fr.ird.referential.ps.common.WeightCategory#1464000000000#1014", + "speciesFate": "fr.ird.referential.ps.common.SpeciesFate#1239832683619#0.5722739932065866", + "weight": 14.0, + "weightMeasureMethod": "fr.ird.referential.common.WeightMeasureMethod#666#03" + }, + { + "comment": "qa", + "species": "fr.ird.referential.common.Species#1239832685475#0.13349466123905152", + "weightCategory": "fr.ird.referential.ps.common.WeightCategory#1464000000000#1014", + "speciesFate": "fr.ird.referential.ps.common.SpeciesFate#1239832683619#0.5722739932065866", + "weight": 5.0, + "weightMeasureMethod": "fr.ird.referential.common.WeightMeasureMethod#666#03" + } + ], + "floatingObject": [], + "observedSystem": [ + "fr.ird.referential.ps.common.ObservedSystem#1239832686428#0.6854047537933218", + "fr.ird.referential.ps.common.ObservedSystem#0#1.2" + ], + "comment": "transfert radeau esp avec péche" + }, + { + "time": "2021-02-06T17:00:00.000Z", + "latitude": -1.43, + "longitude": 59.95, + "latitudeOriginal": null, + "longitudeOriginal": null, + "originalDataModified": false, + "vmsDivergent": false, + "positionCorrected": false, + "number": 2, + "setCount": 0, + "setSuccessStatus": "fr.ird.referential.ps.logbook.SetSuccessStatus#1464000000000#00", + "seaSurfaceTemperature": 28.0, + "windDirection": 310.0, + "vesselActivity": "fr.ird.referential.ps.common.VesselActivity#1239832675370#0.9125190289998782", + "totalWeight": null, + "catches": [], + "floatingObject": [], + "observedSystem": [ + "fr.ird.referential.ps.common.ObservedSystem#1239832686428#0.6854047537933218", + "fr.ird.referential.ps.common.ObservedSystem#0#1.2" + ], + "comment": "radeau mouillé" + } + ] + }, + { + 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"departureWellContentStatus": "fr.ird.referential.ps.logbook.WellContentStatus#1464000000000#03", + "landingWellContentStatus": "fr.ird.referential.ps.logbook.WellContentStatus#1464000000000#03", + "observationsAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#099", + "logbookAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#001", + "targetWellsSamplingAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#999", + "landingAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#999", + "localMarketAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#999", + "localMarketWellsSamplingAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#999", + "localMarketSurveySamplingAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#999", + "advancedSamplingAcquisitionStatus": "fr.ird.referential.ps.common.AcquisitionStatus#1464000000000#999", + "loch": 4481, + "logbookComment": "NB: fp consignataire cmb abidjan=19,3T" +} \ No newline at end of file View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/commit/9c95c3481d85ef16dc488ecb7… -- View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/commit/9c95c3481d85ef16dc488ecb7… You're receiving this email because of your account on gitlab.com.

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[Git][ultreiaio/ird-observe][develop] 8 commits: update pom
by Tony CHEMIT (＠tchemit) March 9, 2022

March 9, 2022

Tony CHEMIT pushed to branch develop at ultreiaio / ird-observe Commits: e0a826fe by Tony Chemit at 2022-03-09T17:40:28+01:00 update pom - - - - - 45739b24 by Tony Chemit at 2022-03-09T17:40:28+01:00 Replace TopiaEntityScript by TopiaEntitySqlScript - See ultreiaio/topia-extension#110 - - - - - 20c2a13f by Tony Chemit at 2022-03-09T17:40:28+01:00 Replace paths entity centric by sql model centric approach - See ultreiaio/topia-extension#111 - - - - - 2579a4da by Tony Chemit at 2022-03-09T17:40:28+01:00 move metadata model to service sql and clean all API - See ultreiaio/topia-extension#112 - - - - - a48ad034 by Tony Chemit at 2022-03-09T17:40:28+01:00 Improve service local logs (add type and id if found in method invocation) - - - - - de552907 by Tony Chemit at 2022-03-09T17:40:28+01:00 Add FIXME - - - - - 78280dd9 by Tony Chemit at 2022-03-09T17:40:28+01:00 Introduce TopiaIdFactoryForBulkSupport - See ultreiaio/topia-extension#114 - - - - - 9e0bf43c by Tony Chemit at 2022-03-09T17:51:03+01:00 Bouton "Créer la base locale" ne marche pas - Closes #2197 - - - - - 7 changed files: - client/core/src/main/java/fr/ird/observe/client/datasource/api/ObserveSwingDataSource.java - client/datasource/actions/src/main/java/fr/ird/observe/client/datasource/actions/save/actions/Start.java - client/datasource/editor/api/src/main/java/fr/ird/observe/client/datasource/editor/api/DataSourceEditorHelper.java - client/datasource/editor/api/src/main/java/fr/ird/observe/client/datasource/editor/api/wizard/DataSourceHelper.java - core/api/dto/pom.xml - core/persistence/java/pom.xml - core/persistence/java/src/main/java/fr/ird/observe/entities/ObserveTopiaApplicationContext.java The diff was not included because it is too large. View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/3904f9b2cbddbbd769cb2b94… -- View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/3904f9b2cbddbbd769cb2b94… You're receiving this email because of your account on gitlab.com.

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[Git][ultreiaio/ird-observe][develop] 7 commits: update pom
by Tony CHEMIT (＠tchemit) March 9, 2022

March 9, 2022

Tony CHEMIT pushed to branch develop at ultreiaio / ird-observe Commits: f45fb5f1 by Tony Chemit at 2022-03-08T13:24:53+01:00 update pom - - - - - 8a0091fb by Tony Chemit at 2022-03-08T13:24:53+01:00 Replace TopiaEntityScript by TopiaEntitySqlScript - See ultreiaio/topia-extension#110 - - - - - 341b24cc by Tony Chemit at 2022-03-08T13:24:53+01:00 Replace paths entity centric by sql model centric approach - See ultreiaio/topia-extension#111 - - - - - 2faa40ba by Tony Chemit at 2022-03-08T15:34:59+01:00 move metadata model to service sql and clean all API - See ultreiaio/topia-extension#112 - - - - - d66d16f9 by Tony Chemit at 2022-03-08T15:34:59+01:00 Improve service local logs (add type and id if found in method invocation) - - - - - 53e4a5a6 by Tony Chemit at 2022-03-08T15:34:59+01:00 Add FIXME - - - - - 3904f9b2 by Tony Chemit at 2022-03-09T13:05:09+01:00 move metadata model to service sql and clean all API - See ultreiaio/topia-extension#112 - - - - - 6 changed files: - client/core/src/main/java/fr/ird/observe/client/datasource/api/ObserveSwingDataSource.java - client/datasource/actions/src/main/java/fr/ird/observe/client/datasource/actions/save/actions/Start.java - client/datasource/editor/api/src/main/java/fr/ird/observe/client/datasource/editor/api/wizard/DataSourceHelper.java - core/api/dto/pom.xml - core/persistence/java/pom.xml - core/persistence/java/src/main/java/fr/ird/observe/entities/ObserveTopiaApplicationContext.java The diff was not included because it is too large. View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/7674c2d0bdc5ab69c811fe37… -- View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/7674c2d0bdc5ab69c811fe37… You're receiving this email because of your account on gitlab.com.

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[Git][ultreiaio/ird-observe][develop] 2 commits: Add FIXME
by Tony CHEMIT (＠tchemit) March 8, 2022

March 8, 2022

Tony CHEMIT pushed to branch develop at ultreiaio / ird-observe Commits: 889b2601 by Tony Chemit at 2022-03-08T06:20:39+01:00 Add FIXME - - - - - 7674c2d0 by Tony Chemit at 2022-03-08T06:27:43+01:00 update pom - - - - - 2 changed files: - core/services/local/src/main/java/fr/ird/observe/services/local/service/ObserveServiceLocal.java - pom.xml Changes: ===================================== core/services/local/src/main/java/fr/ird/observe/services/local/service/ObserveServiceLocal.java ===================================== @@ -340,6 +340,7 @@ public abstract class ObserveServiceLocal implements ObserveService, ServiceCont } protected final void initPersistence(String methodName) { + //FIXME For close method we got in a test a failure on this (the persistence was already close), need a fix serviceContext.initPersistence(methodName, Permission.NONE); } ===================================== pom.xml ===================================== @@ -23,7 +23,7 @@ <parent> <groupId>io.ultreia.maven</groupId> <artifactId>pom</artifactId> - <version>2022.29</version> + <version>2022.30</version> </parent> <groupId>fr.ird.observe</groupId> <artifactId>ird-observe</artifactId> View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/a406736ee147087bae13d4aa… -- View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/a406736ee147087bae13d4aa… You're receiving this email because of your account on gitlab.com.

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[Git][ultreiaio/ird-observe][develop] 3 commits: move metadata model to service sql and clean all API - See ultreiaio/topia-extension#112
by Tony CHEMIT (＠tchemit) March 8, 2022

March 8, 2022

Tony CHEMIT pushed to branch develop at ultreiaio / ird-observe Commits: eb1c342b by Tony Chemit at 2022-03-08T06:13:12+01:00 move metadata model to service sql and clean all API - See ultreiaio/topia-extension#112 - - - - - 7d87fc65 by Tony Chemit at 2022-03-08T06:13:12+01:00 Add nice method TopiaSqlScript#content - See ultreiaio/topia-extension#113 - - - - - a406736e by Tony Chemit at 2022-03-08T06:13:12+01:00 Improve service local logs (add type and id if found in method invocation) - - - - - 19 changed files: - client/core/src/main/java/fr/ird/observe/client/datasource/api/ObserveSwingDataSource.java - client/datasource/actions/src/main/java/fr/ird/observe/client/datasource/actions/save/actions/Start.java - client/datasource/editor/api/src/main/java/fr/ird/observe/client/datasource/editor/api/wizard/DataSourceHelper.java - core/persistence/java/src/main/java/fr/ird/observe/entities/ObserveTopiaApplicationContext.java - core/persistence/java/src/main/resources/META-INF/persistence/Observe/TopiaEntitySqlCopyPlanModel.json - core/persistence/java/src/main/resources/META-INF/persistence/Observe/TopiaEntitySqlDeletePlanModel.json - + core/persistence/java/src/main/resources/META-INF/persistence/Observe/TopiaEntitySqlReplicatePlanModel.json - core/persistence/java/src/test/java/fr/ird/observe/spi/script/UpdateLastUpdateDateFieldScriptTest.java - core/persistence/java/src/test/java/fr/ird/observe/spi/script/UpdateLastUpdateDateTableScriptTest.java - core/persistence/test/src/main/java/fr/ird/observe/persistence/test/PersistenceTestSupportRead.java - core/persistence/test/src/main/java/fr/ird/observe/persistence/test/PersistenceTestSupportWrite.java - core/persistence/test/src/test/java/fr/ird/observe/persistence/test/DefinitionContentTest.java - core/persistence/test/src/test/java/fr/ird/observe/persistence/test/PersistenceModelWriteTest.java - core/persistence/test/src/test/java/fr/ird/observe/persistence/test/SqlServiceTest.java - core/persistence/test/src/test/java/fr/ird/observe/persistence/test/ValidationContentTest.java - core/services/local/src/main/java/fr/ird/observe/services/local/service/DataSourceServiceLocalSupport.java - core/services/local/src/main/java/fr/ird/observe/services/local/service/ObserveServiceLocal.java - core/services/local/src/main/java/fr/ird/observe/services/local/service/referential/SynchronizeServiceLocalSupport.java - core/services/test/src/main/java/fr/ird/observe/services/service/DataSourceServiceFixtures.java Changes: ===================================== client/core/src/main/java/fr/ird/observe/client/datasource/api/ObserveSwingDataSource.java ===================================== @@ -457,7 +457,7 @@ public class ObserveSwingDataSource extends AbstractJavaBean implements ObserveS log.info(String.format("Do backup of %s into: %s", this, dst)); try { Files.deleteIfExists(dst); - CreateDatabaseRequest request = CreateDatabaseRequest.of(false, getClientConfig().getModelVersion()).addSchema().addStandaloneTables().addAllData(); + CreateDatabaseRequest request = CreateDatabaseRequest.builder(false, getClientConfig().getModelVersion()).addSchema().addStandaloneTables().addAllData().build(); TopiaSqlScript dataDump = getDataSourceService().produceCreateSqlScript(request); dataDump.copy(dst); } catch (Exception e) { ===================================== client/datasource/actions/src/main/java/fr/ird/observe/client/datasource/actions/save/actions/Start.java ===================================== @@ -86,7 +86,7 @@ public class Start extends SaveLocalUIActionSupport { File backupFile = stepModel.getBackupFile(); DataSourceService dumpService = source.getDataSourceService(); - CreateDatabaseRequest request = CreateDatabaseRequest.of(false, source.getVersion()).addSchema().addStandaloneTables().addAllData(); + CreateDatabaseRequest request = CreateDatabaseRequest.builder(false, source.getVersion()).addSchema().addStandaloneTables().addAllData().build(); TopiaSqlScript dump = dumpService.produceCreateSqlScript(request); dump.copy(backupFile.toPath()); } ===================================== client/datasource/editor/api/src/main/java/fr/ird/observe/client/datasource/editor/api/wizard/DataSourceHelper.java ===================================== @@ -135,7 +135,7 @@ public class DataSourceHelper { try (ObserveSwingDataSource source = model.getDataSourcesManager().newDataSource(configSrc)) { source.open(); DataSourceService dumpService = source.getDataSourceService(); - CreateDatabaseRequest request = CreateDatabaseRequest.of(false, source.getVersion()).addSchema().addStandaloneTables(); + CreateDatabaseRequest request = CreateDatabaseRequest.builder(false, source.getVersion()).addSchema().addStandaloneTables().build(); importDatabase = dumpService.produceCreateSqlScript(request); } } ===================================== core/persistence/java/src/main/java/fr/ird/observe/entities/ObserveTopiaApplicationContext.java ===================================== @@ -40,14 +40,15 @@ import org.nuiton.topia.persistence.TopiaConfigurationExtension; import org.nuiton.topia.persistence.TopiaEntity; import org.nuiton.topia.persistence.TopiaIdFactory; import org.nuiton.topia.persistence.TopiaPersistenceContextConstructorParameterSupport; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModel; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModelPaths; import org.nuiton.topia.persistence.script.TopiaSqlScript; import org.nuiton.topia.service.migration.TopiaMigrationService; import org.nuiton.topia.service.sql.blob.TopiaEntitySqlBlobModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModelPaths; import org.nuiton.topia.service.sql.model.TopiaEntitySqlModel; import org.nuiton.topia.service.sql.plan.copy.TopiaEntitySqlCopyPlanModel; import org.nuiton.topia.service.sql.plan.delete.TopiaEntitySqlDeletePlanModel; +import org.nuiton.topia.service.sql.plan.replicate.TopiaEntitySqlReplicatePlanModel; import org.nuiton.topia.service.sql.request.CreateDatabaseRequest; import org.nuiton.topia.service.sql.usage.TopiaEntitySqlUsageModel; @@ -120,6 +121,11 @@ public class ObserveTopiaApplicationContext extends AbstractObserveTopiaApplicat return ObserveTopiaEntitySqlModelResource.get().getCopyPlanModel(); } + @Override + public TopiaEntitySqlReplicatePlanModel getReplicatePlanModel() { + return ObserveTopiaEntitySqlModelResource.get().getReplicatePlanModel(); + } + @Override public TopiaEntitySqlDeletePlanModel getDeletePlanModel() { return ObserveTopiaEntitySqlModelResource.get().getDeletePlanModel(); @@ -174,7 +180,7 @@ public class ObserveTopiaApplicationContext extends AbstractObserveTopiaApplicat temporaryTopiaApplicationContext.getMigrationService().createSchemaIfNotExist(); temporaryTopiaApplicationContext.getMigrationService().runSchemaMigration(); } - CreateDatabaseRequest request = CreateDatabaseRequest.of(true, dataSourceConfiguration.getModelVersion()).addSchema().addStandaloneTables().addAllData(); + CreateDatabaseRequest request = CreateDatabaseRequest.builder(true, dataSourceConfiguration.getModelVersion()).addSchema().addStandaloneTables().addAllData().build(); TopiaSqlScript dump = getSqlService().consume(request); executeSqlStatements(dump); migrationService.createSchemaIfNotExist(); @@ -204,8 +210,8 @@ public class ObserveTopiaApplicationContext extends AbstractObserveTopiaApplicat log.info("Import referential."); ObserveDataSourceConfiguration importDataSourceConfiguration = dataSourceCreateConfiguration.getImportReferentialDataSourceConfiguration(); Version dbVersion = Version.valueOf(getModelVersion()); - CreateDatabaseRequest request = CreateDatabaseRequest.of(!dataSourceConfiguration.isLocal(), dbVersion) - .addStandaloneTables(); + CreateDatabaseRequest request = CreateDatabaseRequest.builder(!dataSourceConfiguration.isLocal(), dbVersion) + .addStandaloneTables().build(); TopiaSqlScript referentialDump; ObserveTopiaApplicationContext temporaryTopiaApplicationContext = null; try { @@ -225,10 +231,10 @@ public class ObserveTopiaApplicationContext extends AbstractObserveTopiaApplicat if (importData) { ObserveDataSourceConfiguration importDataSourceConfiguration = dataSourceCreateConfiguration.getImportDataDataSourceConfiguration(); Version dbVersion = Version.valueOf(getModelVersion()); - CreateDatabaseRequest request = CreateDatabaseRequest.of(!dataSourceConfiguration.isLocal(), dbVersion); + CreateDatabaseRequest.Builder requestBuilder = CreateDatabaseRequest.builder(!dataSourceConfiguration.isLocal(), dbVersion); if (!referentialImported) { log.info("Get referential."); - request.addStandaloneTables(); + requestBuilder.addStandaloneTables(); } // Récupération du dump qui contient les données @@ -241,10 +247,11 @@ public class ObserveTopiaApplicationContext extends AbstractObserveTopiaApplicat } log.info(String.format("Get data: %s", importDataIds)); for (Map.Entry<String, Collection<String>> entry : idsByType.asMap().entrySet()) { - request.dataIdsToAdd(entry.getKey(), Set.copyOf(entry.getValue())); + requestBuilder.dataIdsToAdd(entry.getKey(), Set.copyOf(entry.getValue())); } TopiaSqlScript dataDump; ObserveTopiaApplicationContext temporaryTopiaApplicationContext = null; + CreateDatabaseRequest request = requestBuilder.build(); try { temporaryTopiaApplicationContext = ObserveTopiaApplicationContextFactory.createTopiaApplicationContext(importDataSourceConfiguration, false); // ObserveDataSourceConnection importDataSourceConnection = serviceContext().newService(importDataSourceConfiguration, AnonymousService.class).open(importDataSourceConfiguration); ===================================== core/persistence/java/src/main/resources/META-INF/persistence/Observe/TopiaEntitySqlCopyPlanModel.json ===================================== The diff for this file was not included because it is too large. ===================================== core/persistence/java/src/main/resources/META-INF/persistence/Observe/TopiaEntitySqlDeletePlanModel.json ===================================== @@ -1,5 +1,5 @@ { - "typeDeletePlans": { + "plans": { "fr.ird.observe.entities.data.ll.common.GearUseFeatures": [ "DELETE FROM ll_common.gearUseFeaturesMeasurement WHERE gearUseFeaturesMeasurement.gearUseFeatures %s;", "DELETE FROM ll_common.gearUseFeatures WHERE gearUseFeatures.topiaId %s;" ===================================== core/persistence/java/src/main/resources/META-INF/persistence/Observe/TopiaEntitySqlReplicatePlanModel.json ===================================== @@ -0,0 +1,1476 @@ +{ + "plans": { + "fr.ird.observe.entities.data.ll.common.GearUseFeatures": [ + { + "gav": "ll_common.gearUseFeatures", + "selectedSql": "SELECT %s FROM ll_common.gearUseFeatures WHERE gearUseFeatures.topiaId %s", + "insertSql": "INSERT INTO ll_common.gearUseFeatures(%s) VALUES (%%s);", + "parentColumnName": "trip", + "columnNames": "topiaid,comment,gear,homeid,lastupdatedate,number,topiacreatedate,topiaversion,trip,usedintrip", + "entryPoint": true + }, + { + "gav": "ll_common.gearUseFeaturesMeasurement", + "selectedSql": "SELECT %s FROM ll_common.gearUseFeaturesMeasurement gearUseFeaturesMeasurement WHERE gearUseFeaturesMeasurement.gearUseFeatures %s", + "insertSql": "INSERT INTO ll_common.gearUseFeaturesMeasurement(%s) VALUES (%%s);", + "parentColumnName": "gearUseFeatures", + "columnNames": "topiaid,gearcharacteristic,gearusefeatures,homeid,lastupdatedate,measurementvalue,topiacreatedate,topiaversion" + } + ], + "fr.ird.observe.entities.data.ll.common.GearUseFeaturesMeasurement": [ + { + "gav": "ll_common.gearUseFeaturesMeasurement", + "selectedSql": "SELECT %s FROM ll_common.gearUseFeaturesMeasurement WHERE gearUseFeaturesMeasurement.topiaId %s", + "insertSql": "INSERT INTO ll_common.gearUseFeaturesMeasurement(%s) VALUES (%%s);", + "parentColumnName": "gearUseFeatures", + "columnNames": "topiaid,gearcharacteristic,gearusefeatures,homeid,lastupdatedate,measurementvalue,topiacreatedate,topiaversion", + "entryPoint": true + } + ], + "fr.ird.observe.entities.data.ll.landing.Landing": [ + { + "gav": "ll_landing.landing", + "selectedSql": "SELECT %s FROM ll_landing.landing WHERE landing.topiaId %s", + "insertSql": "INSERT INTO ll_landing.landing(%s) VALUES (%%s);", + "parentColumnName": "trip", + "columnNames": "topiaid,brokeragecompany,comment,datasource,enddate,harbour,homeid,lastupdatedate,person,processingcompany,shippingcompany,startdate,topiacreatedate,topiaversion,trip,vessel", + "entryPoint": true + }, + { + "gav": "ll_landing.landingPart", + "selectedSql": "SELECT %s FROM ll_landing.landingPart landingPart WHERE landingPart.landing %s", + "insertSql": "INSERT INTO ll_landing.landingPart(%s) VALUES (%%s);", + "parentColumnName": "landing", + "columnNames": "topiaid,categorymax,categorymin,conservation,count,dataquality,homeid,landing,lastupdatedate,onboardprocessing,species,topiacreatedate,topiaversion,weight,weightmeasuremethod" + } + ], + "fr.ird.observe.entities.data.ll.landing.LandingPart": [ + { + "gav": "ll_landing.landingPart", + "selectedSql": "SELECT %s FROM ll_landing.landingPart WHERE landingPart.topiaId %s", + "insertSql": "INSERT INTO ll_landing.landingPart(%s) VALUES (%%s);", + "parentColumnName": "landing", + "columnNames": "topiaid,categorymax,categorymin,conservation,count,dataquality,homeid,landing,lastupdatedate,onboardprocessing,species,topiacreatedate,topiaversion,weight,weightmeasuremethod", + "entryPoint": true + } + ], + "fr.ird.observe.entities.data.ll.logbook.Activity": [ + { + "gav": "ll_logbook.set", + "selectedSql": "SELECT %s FROM ll_logbook.set set INNER JOIN ll_logbook.activity activity ON activity.set = set.topiaId WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.set(%s) VALUES (%%s);", + "columnNames": "topiaid,basketlinelength,basketspersectioncount,branchlinesperbasketcount,comment,haulingbreaks,haulingdirectionsameassetting,haulingendlatitude,haulingendlongitude,haulingendtimestamp,haulingstartlatitude,haulingstartlongitude,haulingstarttimestamp,homeid,lastupdatedate,lengthbetweenbranchlines,lightstickscolor,lightsticksperbasketcount,lightstickstype,lightsticksused,linetype,maxdepthtargeted,monitored,number,settingendlatitude,settingendlongitude,settingendtimestamp,settingshape,settingstartlatitude,settingstartlongitude,settingstarttimestamp,settingvesselspeed,shooterspeed,shooterused,snapweight,swivelweight,timebetweenhooks,topiacreatedate,topiaversion,totalbasketscount,totalhookscount,totallightstickscount,totallinelength,totalsectionscount,weightedsnap,weightedswivel" + }, + { + "gav": "ll_logbook.sample", + "selectedSql": "SELECT %s FROM ll_logbook.sample sample INNER JOIN ll_logbook.activity activity ON activity.sample = sample.topiaId WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.sample(%s) VALUES (%%s);", + "columnNames": "topiaid,comment,homeid,lastupdatedate,latitude,longitude,timestamp,topiacreatedate,topiaversion,trip" + }, + { + "gav": "ll_logbook.activity", + "selectedSql": "SELECT %s FROM ll_logbook.activity WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.activity(%s) VALUES (%%s);", + "parentColumnName": "trip", + "columnNames": "topiaid,comment,currentdirection,currentspeed,dataquality,endtimestamp,fpazone,homeid,lastupdatedate,latitude,longitude,relatedobservedactivity,sample,seasurfacetemperature,set,starttimestamp,topiacreatedate,topiaversion,trip,vesselactivity,wind,winddirection", + "columnsToReplace": "set,sample", + "columnsToDetach": "relatedObservedActivity~ll_observation.activity", + "entryPoint": true + }, + { + "gav": "ll_logbook.baitsComposition", + "selectedSql": "SELECT %s FROM ll_logbook.baitsComposition baitsComposition INNER JOIN ll_logbook.activity activity ON activity.set = baitsComposition.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.baitsComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,baitsettingstatus,baittype,homeid,individualsize,individualweight,lastupdatedate,proportion,set,topiacreatedate,topiaversion" + }, + { + "gav": "ll_logbook.branchlinesComposition", + "selectedSql": "SELECT %s FROM ll_logbook.branchlinesComposition branchlinesComposition INNER JOIN ll_logbook.activity activity ON activity.set = branchlinesComposition.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.branchlinesComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,length,proportion,set,topiacreatedate,topiaversion,toptype,tracelinelength,tracelinetype" + }, + { + "gav": "ll_logbook.catch", + "selectedSql": "SELECT %s FROM ll_logbook.catch catch INNER JOIN ll_logbook.activity activity ON activity.set = catch.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.catch(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,acquisitionmode,beatdiameter,catchfate,catchhealthstatus,comment,count,countdepredated,depredated,depredatedproportion,discardhealthstatus,homeid,hookwhendiscarded,lastupdatedate,number,onboardprocessing,photoreferences,set,set_idx,species,tagnumber,topiacreatedate,topiaversion,totalweight,weightmeasuremethod" + }, + { + "gav": "ll_logbook.floatlinesComposition", + "selectedSql": "SELECT %s FROM ll_logbook.floatlinesComposition floatlinesComposition INNER JOIN ll_logbook.activity activity ON activity.set = floatlinesComposition.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.floatlinesComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,length,linetype,proportion,set,topiacreatedate,topiaversion" + }, + { + "gav": "ll_logbook.hooksComposition", + "selectedSql": "SELECT %s FROM ll_logbook.hooksComposition hooksComposition INNER JOIN ll_logbook.activity activity ON activity.set = hooksComposition.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.hooksComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,hookoffset,hooksize,hooktype,lastupdatedate,proportion,set,topiacreatedate,topiaversion" + }, + { + "gav": "ll_logbook.samplePart", + "selectedSql": "SELECT %s FROM ll_logbook.samplePart samplePart INNER JOIN ll_logbook.activity activity ON activity.sample = samplePart.sample WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.samplePart(%s) VALUES (%%s);", + "parentColumnName": "sample", + "columnNames": "topiaid,acquisitionmode,count,homeid,lastupdatedate,length,lengthmeasuremethod,sample,sample_idx,sex,sizemeasuretype,species,tagnumber,topiacreatedate,topiaversion,weight,weightmeasuremethod,weightmeasuretype" + }, + { + "gav": "ll_logbook.set_mitigationtype", + "selectedSql": "SELECT %s FROM ll_logbook.set_mitigationtype INNER JOIN ll_logbook.set set ON set_mitigationtype.set = set.topiaId INNER JOIN ll_logbook.activity activity ON activity.set = set.topiaId WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.set_mitigationtype(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "mitigationtype,set", + "columnsToReplace": "set" + }, + { + "gav": "ll_logbook.catch_predator", + "selectedSql": "SELECT %s FROM ll_logbook.catch_predator INNER JOIN ll_logbook.catch catch ON catch_predator.catch = catch.topiaId INNER JOIN ll_logbook.activity activity ON activity.set = catch.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.catch_predator(%s) VALUES (%%s);", + "parentColumnName": "catch", + "columnNames": "catch,species", + "columnsToReplace": "catch" + } + ], + "fr.ird.observe.entities.data.ll.logbook.BaitsComposition": [ + { + "gav": "ll_logbook.baitsComposition", + "selectedSql": "SELECT %s FROM ll_logbook.baitsComposition WHERE baitsComposition.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.baitsComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,baitsettingstatus,baittype,homeid,individualsize,individualweight,lastupdatedate,proportion,set,topiacreatedate,topiaversion", + "entryPoint": true + } + ], + "fr.ird.observe.entities.data.ll.logbook.BranchlinesComposition": [ + { + "gav": "ll_logbook.branchlinesComposition", + "selectedSql": "SELECT %s FROM ll_logbook.branchlinesComposition WHERE branchlinesComposition.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.branchlinesComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,length,proportion,set,topiacreatedate,topiaversion,toptype,tracelinelength,tracelinetype", + "entryPoint": true + } + ], + "fr.ird.observe.entities.data.ll.logbook.Catch": [ + { + "gav": "ll_logbook.catch", + "selectedSql": "SELECT %s FROM ll_logbook.catch WHERE catch.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.catch(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,acquisitionmode,beatdiameter,catchfate,catchhealthstatus,comment,count,countdepredated,depredated,depredatedproportion,discardhealthstatus,homeid,hookwhendiscarded,lastupdatedate,number,onboardprocessing,photoreferences,set,set_idx,species,tagnumber,topiacreatedate,topiaversion,totalweight,weightmeasuremethod", + "entryPoint": true + }, + { + "gav": "ll_logbook.catch_predator", + "selectedSql": "SELECT %s FROM ll_logbook.catch_predator WHERE catch_predator.catch %s", + "insertSql": "INSERT INTO ll_logbook.catch_predator(%s) VALUES (%%s);", + "parentColumnName": "catch", + "columnNames": "catch,species", + "columnsToReplace": "catch" + } + ], + "fr.ird.observe.entities.data.ll.logbook.FloatlinesComposition": [ + { + "gav": "ll_logbook.floatlinesComposition", + "selectedSql": "SELECT %s FROM ll_logbook.floatlinesComposition WHERE floatlinesComposition.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.floatlinesComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,length,linetype,proportion,set,topiacreatedate,topiaversion", + "entryPoint": true + } + ], + "fr.ird.observe.entities.data.ll.logbook.HooksComposition": [ + { + "gav": "ll_logbook.hooksComposition", + "selectedSql": "SELECT %s FROM ll_logbook.hooksComposition WHERE hooksComposition.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.hooksComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,hookoffset,hooksize,hooktype,lastupdatedate,proportion,set,topiacreatedate,topiaversion", + "entryPoint": true + } + ], + "fr.ird.observe.entities.data.ll.logbook.Sample": [ + { + "gav": "ll_logbook.sample", + "selectedSql": "SELECT %s FROM ll_logbook.sample WHERE sample.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.sample(%s) VALUES (%%s);", + "updateReverseAssociationSql": "UPDATE ll_logbook.activity activity SET activity.sample = '%s' WHERE activity.topiaId = '%s'", + "columnNames": "topiaid,comment,homeid,lastupdatedate,latitude,longitude,timestamp,topiacreatedate,topiaversion,trip", + "entryPoint": true + }, + { + "gav": "ll_logbook.samplePart", + "selectedSql": "SELECT %s FROM ll_logbook.samplePart samplePart WHERE samplePart.sample %s", + "insertSql": "INSERT INTO ll_logbook.samplePart(%s) VALUES (%%s);", + "parentColumnName": "sample", + "columnNames": "topiaid,acquisitionmode,count,homeid,lastupdatedate,length,lengthmeasuremethod,sample,sample_idx,sex,sizemeasuretype,species,tagnumber,topiacreatedate,topiaversion,weight,weightmeasuremethod,weightmeasuretype" + 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%s FROM ps_observation.objectObservedSpecies objectObservedSpecies INNER JOIN ps_observation.floatingObject floatingObject ON floatingObject.topiaId = objectObservedSpecies.floatingObject INNER JOIN ps_observation.activity activity ON activity.topiaId = floatingObject.activity WHERE activity.route %s", + "insertSql": "INSERT INTO ps_observation.objectObservedSpecies(%s) VALUES (%%s);", + "parentColumnName": "floatingObject", + "columnNames": "topiaid,count,floatingobject,homeid,lastupdatedate,species,speciesstatus,topiacreatedate,topiaversion" + }, + { + "gav": "ps_observation.objectSchoolEstimate", + "selectedSql": "SELECT %s FROM ps_observation.objectSchoolEstimate objectSchoolEstimate INNER JOIN ps_observation.floatingObject floatingObject ON floatingObject.topiaId = objectSchoolEstimate.floatingObject INNER JOIN ps_observation.activity activity ON activity.topiaId = floatingObject.activity WHERE activity.route %s", + "insertSql": "INSERT INTO ps_observation.objectSchoolEstimate(%s) VALUES (%%s);", + "parentColumnName": "floatingObject", + "columnNames": "topiaid,floatingobject,homeid,lastupdatedate,species,topiacreatedate,topiaversion,totalweight,weightmeasuremethod" + }, + { + "gav": "ps_observation.schoolEstimate", + "selectedSql": "SELECT %s FROM ps_observation.schoolEstimate schoolEstimate INNER JOIN ps_observation.activity activity ON activity.set = schoolEstimate.set WHERE activity.route %s", + "insertSql": "INSERT INTO ps_observation.schoolEstimate(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,meanweight,set,species,topiacreatedate,topiaversion,totalweight,weightmeasuremethod" + }, + { + "gav": "ps_observation.transmittingBuoy", + "selectedSql": "SELECT %s FROM ps_observation.transmittingBuoy transmittingBuoy INNER JOIN ps_observation.floatingObject floatingObject ON floatingObject.topiaId = transmittingBuoy.floatingObject INNER JOIN ps_observation.activity activity ON activity.topiaId = floatingObject.activity WHERE activity.route %s", + "insertSql": "INSERT INTO ps_observation.transmittingBuoy(%s) VALUES (%%s);", + "parentColumnName": "floatingObject", + "columnNames": "topiaid,code,comment,country,floatingobject,homeid,lastupdatedate,latitude,longitude,topiacreatedate,topiaversion,transmittingbuoyoperation,transmittingbuoyownership,transmittingbuoytype,vessel" + }, + { + "gav": "ps_observation.sample", + "selectedSql": "SELECT %s FROM ps_observation.sample sample INNER JOIN ps_observation.activity activity ON activity.set = sample.set WHERE activity.route %s", + "insertSql": "INSERT INTO ps_observation.sample(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,comment,homeid,lastupdatedate,set,topiacreatedate,topiaversion" + }, + { + "gav": "ps_observation.sampleMeasure", + "selectedSql": "SELECT %s FROM ps_observation.sampleMeasure sampleMeasure INNER JOIN ps_observation.sample sample ON sample.topiaId = sampleMeasure.sample INNER JOIN ps_observation.activity activity ON activity.set = sample.set WHERE activity.route %s", + "insertSql": "INSERT INTO ps_observation.sampleMeasure(%s) VALUES (%%s);", + "parentColumnName": "sample", + "columnNames": "topiaid,acquisitionmode,count,homeid,islengthcomputed,isweightcomputed,lastupdatedate,length,lengthmeasuremethod,picturesreferences,sample,sample_idx,sex,sizemeasuretype,species,speciesfate,tagnumber,topiacreatedate,topiaversion,weight,weightmeasuremethod,weightmeasuretype" + }, + { + "gav": "ps_observation.activity_observedsystem", + "selectedSql": "SELECT %s FROM ps_observation.activity_observedsystem INNER JOIN ps_observation.activity activity ON activity_observedsystem.activity = activity.topiaId WHERE activity.route %s", + "insertSql": "INSERT INTO ps_observation.activity_observedsystem(%s) VALUES (%%s);", + "parentColumnName": "activity", + "columnNames": "activity,observedsystem", + "columnsToReplace": "activity" + } + ], + "fr.ird.observe.entities.data.ps.observation.Sample": [ + { + "gav": "ps_observation.sample", + "selectedSql": "SELECT %s FROM ps_observation.sample WHERE sample.topiaId %s", + "insertSql": "INSERT INTO ps_observation.sample(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,comment,homeid,lastupdatedate,set,topiacreatedate,topiaversion", + "entryPoint": true + }, + { + "gav": "ps_observation.sampleMeasure", + "selectedSql": "SELECT %s FROM ps_observation.sampleMeasure sampleMeasure WHERE sampleMeasure.sample %s", + "insertSql": "INSERT INTO ps_observation.sampleMeasure(%s) VALUES (%%s);", + "parentColumnName": "sample", + "columnNames": "topiaid,acquisitionmode,count,homeid,islengthcomputed,isweightcomputed,lastupdatedate,length,lengthmeasuremethod,picturesreferences,sample,sample_idx,sex,sizemeasuretype,species,speciesfate,tagnumber,topiacreatedate,topiaversion,weight,weightmeasuremethod,weightmeasuretype" + } + ], + "fr.ird.observe.entities.data.ps.observation.SampleMeasure": [ + { + "gav": "ps_observation.sampleMeasure", + "selectedSql": "SELECT %s FROM ps_observation.sampleMeasure WHERE sampleMeasure.topiaId %s", + "insertSql": "INSERT INTO ps_observation.sampleMeasure(%s) VALUES (%%s);", + "parentColumnName": "sample", + "columnNames": "topiaid,acquisitionmode,count,homeid,islengthcomputed,isweightcomputed,lastupdatedate,length,lengthmeasuremethod,picturesreferences,sample,sample_idx,sex,sizemeasuretype,species,speciesfate,tagnumber,topiacreatedate,topiaversion,weight,weightmeasuremethod,weightmeasuretype", + "entryPoint": true + } + ], + "fr.ird.observe.entities.data.ps.observation.SchoolEstimate": [ + { + "gav": "ps_observation.schoolEstimate", + "selectedSql": "SELECT %s FROM ps_observation.schoolEstimate WHERE schoolEstimate.topiaId %s", + "insertSql": "INSERT INTO ps_observation.schoolEstimate(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,meanweight,set,species,topiacreatedate,topiaversion,totalweight,weightmeasuremethod", + "entryPoint": true + } + ], + "fr.ird.observe.entities.data.ps.observation.Set": [ + { + "gav": "ps_observation.set", + "selectedSql": "SELECT %s FROM ps_observation.set WHERE set.topiaId %s", + "insertSql": "INSERT INTO ps_observation.set(%s) VALUES (%%s);", + "updateReverseAssociationSql": "UPDATE ps_observation.activity activity SET activity.set = '%s' WHERE activity.topiaId = '%s'", + "columnNames": "topiaid,comment,currentdirection,currentmeasuredepth,currentspeed,endtimestamp,haulingendtimestamp,haulingstarttimestamp,homeid,lastupdatedate,maxgeardepth,reasonfornullset,schoolmeandepth,schoolthickness,schooltopdepth,schooltype,starttime,supportvesselname,topiacreatedate,topiaversion", + "entryPoint": true + }, + { + "gav": "ps_observation.catch", + "selectedSql": "SELECT %s FROM ps_observation.catch catch WHERE catch.set %s", + "insertSql": "INSERT INTO ps_observation.catch(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,catchweight,catchweightcomputedsource,comment,homeid,informationsource,lastupdatedate,lengthmeasuremethod,meanlength,meanlengthcomputedsource,meanweight,meanweightcomputedsource,reasonfordiscard,set,set_idx,species,speciesfate,topiacreatedate,topiaversion,totalcount,totalcountcomputedsource,weightmeasuremethod,well" + }, + { + "gav": "ps_observation.nonTargetCatchRelease", + "selectedSql": "SELECT %s FROM ps_observation.nonTargetCatchRelease nonTargetCatchRelease WHERE nonTargetCatchRelease.set %s", + "insertSql": "INSERT INTO ps_observation.nonTargetCatchRelease(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,acquisitionmode,comment,conformity,count,homeid,lastupdatedate,length,lengthmeasuremethod,releasingtime,set,set_idx,sex,species,speciesgroupreleasemode,status,topiacreatedate,topiaversion" + }, + { + "gav": "ps_observation.schoolEstimate", + "selectedSql": "SELECT %s FROM ps_observation.schoolEstimate schoolEstimate WHERE schoolEstimate.set %s", + "insertSql": "INSERT INTO ps_observation.schoolEstimate(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,meanweight,set,species,topiacreatedate,topiaversion,totalweight,weightmeasuremethod" + }, + { + "gav": "ps_observation.sample", + "selectedSql": "SELECT %s FROM ps_observation.sample sample WHERE sample.set %s", + "insertSql": "INSERT INTO ps_observation.sample(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,comment,homeid,lastupdatedate,set,topiacreatedate,topiaversion" + }, + { + "gav": "ps_observation.sampleMeasure", + "selectedSql": "SELECT %s FROM ps_observation.sampleMeasure sampleMeasure INNER JOIN ps_observation.sample sample ON sample.topiaId = sampleMeasure.sample WHERE sample.set %s", + "insertSql": "INSERT INTO ps_observation.sampleMeasure(%s) VALUES (%%s);", + "parentColumnName": "sample", + "columnNames": "topiaid,acquisitionmode,count,homeid,islengthcomputed,isweightcomputed,lastupdatedate,length,lengthmeasuremethod,picturesreferences,sample,sample_idx,sex,sizemeasuretype,species,speciesfate,tagnumber,topiacreatedate,topiaversion,weight,weightmeasuremethod,weightmeasuretype" + } + ], + "fr.ird.observe.entities.data.ps.observation.TransmittingBuoy": [ + { + "gav": "ps_observation.transmittingBuoy", + "selectedSql": "SELECT %s FROM ps_observation.transmittingBuoy WHERE transmittingBuoy.topiaId %s", + "insertSql": "INSERT INTO ps_observation.transmittingBuoy(%s) VALUES (%%s);", + "parentColumnName": "floatingObject", + "columnNames": "topiaid,code,comment,country,floatingobject,homeid,lastupdatedate,latitude,longitude,topiacreatedate,topiaversion,transmittingbuoyoperation,transmittingbuoyownership,transmittingbuoytype,vessel", + "entryPoint": true + } + ] + } +} \ No newline at end of file ===================================== core/persistence/java/src/test/java/fr/ird/observe/spi/script/UpdateLastUpdateDateFieldScriptTest.java ===================================== @@ -23,12 +23,10 @@ package fr.ird.observe.spi.script; */ import fr.ird.observe.entities.ObserveTopiaEntitySqlModelResource; -import fr.ird.observe.spi.script.ToolkitEntitySqlScriptModel; -import fr.ird.observe.spi.script.UpdateLastUpdateDateFieldScript; import org.junit.Assert; import org.junit.Before; import org.junit.Test; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModel; import java.util.Date; import java.util.List; ===================================== core/persistence/java/src/test/java/fr/ird/observe/spi/script/UpdateLastUpdateDateTableScriptTest.java ===================================== @@ -23,12 +23,10 @@ package fr.ird.observe.spi.script; */ import fr.ird.observe.entities.ObserveTopiaEntitySqlModelResource; -import fr.ird.observe.spi.script.ToolkitEntitySqlScriptModel; -import fr.ird.observe.spi.script.UpdateLastUpdateDateTableScript; import org.junit.Assert; import org.junit.Before; import org.junit.Test; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModel; import java.util.Date; import java.util.List; ===================================== core/persistence/test/src/main/java/fr/ird/observe/persistence/test/PersistenceTestSupportRead.java ===================================== @@ -33,8 +33,8 @@ import fr.ird.observe.test.spi.DatabaseVersionConfiguration; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.junit.ClassRule; -import org.nuiton.topia.persistence.metadata.TopiaMetadataEntity; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataEntity; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModel; import org.nuiton.topia.service.sql.model.TopiaEntitySqlModel; import java.util.List; ===================================== core/persistence/test/src/main/java/fr/ird/observe/persistence/test/PersistenceTestSupportWrite.java ===================================== @@ -39,7 +39,7 @@ import org.junit.After; import org.junit.Assert; import org.junit.ClassRule; import org.junit.Rule; -import org.nuiton.topia.persistence.metadata.TopiaMetadataEntity; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataEntity; import org.nuiton.topia.service.sql.model.TopiaEntitySqlDescriptors; import org.nuiton.topia.service.sql.model.TopiaEntitySqlModel; import org.nuiton.topia.service.sql.plan.copy.TopiaEntitySqlCopyPlan; ===================================== core/persistence/test/src/test/java/fr/ird/observe/persistence/test/DefinitionContentTest.java ===================================== @@ -29,7 +29,7 @@ import fr.ird.observe.spi.context.DtoEntityContext; import org.junit.Assert; import org.junit.Before; import org.junit.Test; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModel; /** * Created on 22/11/2021. ===================================== core/persistence/test/src/test/java/fr/ird/observe/persistence/test/PersistenceModelWriteTest.java ===================================== @@ -111,7 +111,7 @@ public class PersistenceModelWriteTest extends PersistenceTestSupportWrite { TopiaEntitySqlCopyPlan copyPlan = copyPlan(classifier, applicationContext); createRequest(classifier); if (!classifier.equals(CLASSIFIER_REFERENTIAL)) { - request.addReplicateTableRequest(applicationContext.getSqlService().getCopyPlanModel().getStandalonePlan(), null); + request.addCopyTableRequest(applicationContext.getSqlService().getCopyPlanModel().getStandalonePlan(), null); selectArgument = TopiaEntitySqlSelectArgument.of(tripId); } importScriptAndAssertCount(applicationContext, copyPlan, selectArgument, expectedCount); @@ -136,7 +136,7 @@ public class PersistenceModelWriteTest extends PersistenceTestSupportWrite { } void importScriptAndAssertCount(ObserveTopiaApplicationContext applicationContext, TopiaEntitySqlCopyPlan copyPlan, TopiaEntitySqlSelectArgument selectArgument, Map<String, Long> expectedResults) throws Exception { - request.addReplicateTableRequest(copyPlan, selectArgument); + request.addCopyTableRequest(copyPlan, selectArgument); TopiaSqlScript script = applicationContext.getSqlService().consume(request); log.info(String.format("Generated script: %s", scriptFile)); File targetDatabaseDirectory = new File(localTestMethodResource.getTestDirectory(), "import-" + scriptFile.getName()); ===================================== core/persistence/test/src/test/java/fr/ird/observe/persistence/test/SqlServiceTest.java ===================================== @@ -41,9 +41,7 @@ import org.junit.runners.Parameterized; import org.nuiton.topia.persistence.script.TopiaSqlScript; import org.nuiton.topia.service.sql.request.DeleteRequest; -import java.io.ByteArrayOutputStream; import java.io.IOException; -import java.nio.charset.StandardCharsets; import java.util.Comparator; import java.util.stream.Collectors; @@ -82,11 +80,7 @@ public class SqlServiceTest extends PersistenceTestSupportWrite { DeleteRequest request = DeleteRequest.of(false, entityType.getName(), id); TopiaSqlScript script = applicationContext.getSqlService().consume(request); if (!ObservePersistenceFixtures.WITH_ASSERT) { - String content; - try (ByteArrayOutputStream target = new ByteArrayOutputStream()) { - script.copy(target); - content = target.toString(StandardCharsets.UTF_8); - } + String content = script.content(); System.out.println(content); } applicationContext.executeSqlStatements(script); ===================================== core/persistence/test/src/test/java/fr/ird/observe/persistence/test/ValidationContentTest.java ===================================== @@ -29,7 +29,7 @@ import fr.ird.observe.spi.context.DtoEntityContext; import org.junit.Assert; import org.junit.Before; import org.junit.Test; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModel; /** * Created on 22/11/2021. ===================================== core/services/local/src/main/java/fr/ird/observe/services/local/service/DataSourceServiceLocalSupport.java ===================================== @@ -38,6 +38,7 @@ import org.nuiton.topia.persistence.script.TopiaSqlScript; import org.nuiton.topia.service.sql.request.CopyEntryPointRequest; import org.nuiton.topia.service.sql.request.CreateDatabaseRequest; import org.nuiton.topia.service.sql.request.DeleteRequest; +import org.nuiton.topia.service.sql.request.ReplicateRequest; import java.io.File; import java.util.Date; @@ -108,6 +109,11 @@ public class DataSourceServiceLocalSupport extends ObserveServiceLocal implement return getTopiaApplicationContext().getSqlService().consume(request); } + @Override + public TopiaSqlScript produceMoveSqlScript(ReplicateRequest request) { + return getTopiaApplicationContext().getSqlService().consume(request); + } + @Override public TopiaSqlScript produceCreateSqlScript(CreateDatabaseRequest request) { if (request.isAddStandaloneTables()) { ===================================== core/services/local/src/main/java/fr/ird/observe/services/local/service/ObserveServiceLocal.java ===================================== @@ -370,6 +370,7 @@ public abstract class ObserveServiceLocal implements ObserveService, ServiceCont } protected final void log(long t0, String prefix, String methodName) { + //TODO Maybe for production, we should remove this ? Need to see memory impact TIME_LOG.log(t0, String.format("%s %s.%s", prefix, getClass().getName(), methodName)); } ===================================== core/services/local/src/main/java/fr/ird/observe/services/local/service/referential/SynchronizeServiceLocalSupport.java ===================================== @@ -33,7 +33,6 @@ import fr.ird.observe.spi.context.ReferentialDtoEntityContext; import fr.ird.observe.spi.module.ObserveBusinessProject; import fr.ird.observe.spi.referential.synchro.OneSideSqlRequest; import fr.ird.observe.spi.referential.synchro.OneSideSqlResult; -import io.ultreia.java4all.util.TimeLog; import org.nuiton.topia.persistence.script.TopiaSqlScript; import java.util.LinkedHashSet; @@ -70,20 +69,15 @@ public class SynchronizeServiceLocalSupport extends ObserveServiceLocal implemen @Override public OneSideSqlResult produceSqlResult(OneSideSqlRequest request) { - long startTime = TimeLog.getTime(); - OneSideSqlResult result = getTopiaApplicationContext() + return getTopiaApplicationContext() .newOneSideSqlResultBuilder(this, now()) .build(request); - TIME_LOG.log(startTime, "produceSqlResult"); - return result; } @Override public void applySql(TopiaSqlScript script, String lastUpdateDateKey) { - long startTime = TimeLog.getTime(); getTopiaPersistenceContext().executeSqlScript(script); updateLastUpdateDates(lastUpdateDateKey); - TIME_LOG.log(startTime, "applySql"); } protected void updateLastUpdateDates(String lastUpdateDateKey) { ===================================== core/services/test/src/main/java/fr/ird/observe/services/service/DataSourceServiceFixtures.java ===================================== @@ -26,17 +26,22 @@ package fr.ird.observe.services.service; import fr.ird.observe.dto.referential.ps.common.ProgramDto; import fr.ird.observe.services.ObserveServicesProvider; import io.ultreia.java4all.util.Version; +import org.apache.logging.log4j.LogManager; +import org.apache.logging.log4j.Logger; import org.junit.Assert; import org.nuiton.topia.persistence.script.TopiaSqlScript; import org.nuiton.topia.service.sql.request.CopyEntryPointRequest; import org.nuiton.topia.service.sql.request.CreateDatabaseRequest; import org.nuiton.topia.service.sql.request.DeleteRequest; +import org.nuiton.topia.service.sql.request.ReplicateRequest; import java.util.Collections; import java.util.Set; public class DataSourceServiceFixtures extends GeneratedDataSourceServiceFixtures { + private static final Logger log = LogManager.getLogger(DataSourceServiceFixtures.class); + @Override public void isIdValid(ObserveServicesProvider servicesProvider, DataSourceService service) { boolean actual = service.isIdValid(ProgramDto.class, getProperty("isIdValid.id")); @@ -77,12 +82,11 @@ public class DataSourceServiceFixtures extends GeneratedDataSourceServiceFixture Assert.assertTrue(actual.isEmpty()); } - @Override public void produceCreateSqlScript(ObserveServicesProvider servicesProvider, DataSourceService service) { Version dbVersion = Version.VZERO; - CreateDatabaseRequest h2Request = CreateDatabaseRequest.of(false, dbVersion); - CreateDatabaseRequest pgRequest = CreateDatabaseRequest.of(true, dbVersion); + CreateDatabaseRequest.Builder h2Request = CreateDatabaseRequest.builder(false, dbVersion); + CreateDatabaseRequest.Builder pgRequest = CreateDatabaseRequest.builder(true, dbVersion); produceCreateSqlScript(service, h2Request); produceCreateSqlScript(service, pgRequest); @@ -95,6 +99,13 @@ public class DataSourceServiceFixtures extends GeneratedDataSourceServiceFixture produceAddSqlScript(service, true, dbVersion); } + @Override + public void produceMoveSqlScript(ObserveServicesProvider servicesProvider, DataSourceService service) { + Version dbVersion = Version.VZERO; + produceMoveSqlScript(service, false, dbVersion); + produceMoveSqlScript(service, true, dbVersion); + } + @Override public void produceDeleteSqlScript(ObserveServicesProvider servicesProvider, DataSourceService service) { String id = getProperty("produceDeleteSqlScript.id"); @@ -102,7 +113,7 @@ public class DataSourceServiceFixtures extends GeneratedDataSourceServiceFixture Assert.assertNotNull(actual); } - protected void produceCreateSqlScript(DataSourceService service, CreateDatabaseRequest request) { + protected void produceCreateSqlScript(DataSourceService service, CreateDatabaseRequest.Builder request) { testRequest(service, request); testRequest(service, request = request.addSchema()); testRequest(service, request = request.addStandaloneTables()); @@ -118,14 +129,35 @@ public class DataSourceServiceFixtures extends GeneratedDataSourceServiceFixture testRequest(service, CopyEntryPointRequest.of(pg, dbVersion, "fr.ird.observe.entities.data.ll.common.Trip", Collections.singleton(getLlCommonTripId()))); } + protected void produceMoveSqlScript(DataSourceService service, boolean pg, Version dbVersion) { + String psObsRouteId = getVariable(getVariableName(fr.ird.observe.dto.data.ps.observation.RouteDto.class)); + String psObsActivityId = getVariable(getVariableName(fr.ird.observe.dto.data.ps.observation.ActivityDto.class)); + String psLogbookRouteId = getVariable(getVariableName(fr.ird.observe.dto.data.ps.logbook.RouteDto.class)); + String psLogbookActivityId = getVariable(getVariableName(fr.ird.observe.dto.data.ps.logbook.ActivityDto.class)); + String llObsActivityId = getVariable(getVariableName(fr.ird.observe.dto.data.ll.observation.ActivityDto.class)); + String llLogbookActivityId = getVariable(getVariableName(fr.ird.observe.dto.data.ll.logbook.ActivityDto.class)); + testRequest(service, ReplicateRequest.of(pg, dbVersion, getPsCommonTripId(), "fr.ird.observe.entities.data.ps.observation.Route", Set.of(psObsRouteId))); + testRequest(service, ReplicateRequest.of(pg, dbVersion, psObsRouteId, "fr.ird.observe.entities.data.ps.observation.Activity", Set.of(psObsActivityId))); + testRequest(service, ReplicateRequest.of(pg, dbVersion, getPsCommonTripId(), "fr.ird.observe.entities.data.ps.logbook.Route", Set.of(psLogbookRouteId))); + testRequest(service, ReplicateRequest.of(pg, dbVersion, psLogbookRouteId, "fr.ird.observe.entities.data.ps.logbook.Activity", Set.of(psLogbookActivityId))); + testRequest(service, ReplicateRequest.of(pg, dbVersion, getLlCommonTripId(), "fr.ird.observe.entities.data.ll.observation.Activity", Set.of(llObsActivityId))); + testRequest(service, ReplicateRequest.of(pg, dbVersion, getLlCommonTripId(), "fr.ird.observe.entities.data.ll.logbook.Activity", Set.of(llLogbookActivityId))); + } + protected void testRequest(DataSourceService service, CopyEntryPointRequest request) { TopiaSqlScript actual = service.produceAddSqlScript(request); Assert.assertNotNull(actual); } - protected void testRequest(DataSourceService service, CreateDatabaseRequest request) { - TopiaSqlScript actual = service.produceCreateSqlScript(request); + protected void testRequest(DataSourceService service, CreateDatabaseRequest.Builder request) { + TopiaSqlScript actual = service.produceCreateSqlScript(request.build()); + Assert.assertNotNull(actual); + } + + protected void testRequest(DataSourceService service, ReplicateRequest request) { + TopiaSqlScript actual = service.produceMoveSqlScript(request); Assert.assertNotNull(actual); + log.warn(String.format("Move script for: %s\n:%s", request, actual.content())); } } View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/df53fa17927f568fea595513… -- View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/compare/df53fa17927f568fea595513… You're receiving this email because of your account on gitlab.com.

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[Git][ultreiaio/ird-observe][develop] move metadata model to service sql and clean all API - See ultreiaio/topia-extension#112
by Tony CHEMIT (＠tchemit) March 7, 2022

March 7, 2022

Tony CHEMIT pushed to branch develop at ultreiaio / ird-observe Commits: df53fa17 by Tony Chemit at 2022-03-07T14:05:24+01:00 move metadata model to service sql and clean all API - See ultreiaio/topia-extension#112 - - - - - 11 changed files: - core/persistence/java/src/main/java/fr/ird/observe/entities/ObserveTopiaApplicationContext.java - core/persistence/java/src/main/resources/META-INF/persistence/Observe/TopiaEntitySqlCopyPlanModel.json - core/persistence/java/src/main/resources/META-INF/persistence/Observe/TopiaEntitySqlDeletePlanModel.json - + core/persistence/java/src/main/resources/META-INF/persistence/Observe/TopiaEntitySqlReplicatePlanModel.json - core/persistence/java/src/test/java/fr/ird/observe/spi/script/UpdateLastUpdateDateFieldScriptTest.java - core/persistence/java/src/test/java/fr/ird/observe/spi/script/UpdateLastUpdateDateTableScriptTest.java - core/persistence/test/src/main/java/fr/ird/observe/persistence/test/PersistenceTestSupportRead.java - core/persistence/test/src/main/java/fr/ird/observe/persistence/test/PersistenceTestSupportWrite.java - core/persistence/test/src/test/java/fr/ird/observe/persistence/test/DefinitionContentTest.java - core/persistence/test/src/test/java/fr/ird/observe/persistence/test/PersistenceModelWriteTest.java - core/persistence/test/src/test/java/fr/ird/observe/persistence/test/ValidationContentTest.java Changes: ===================================== core/persistence/java/src/main/java/fr/ird/observe/entities/ObserveTopiaApplicationContext.java ===================================== @@ -40,14 +40,15 @@ import org.nuiton.topia.persistence.TopiaConfigurationExtension; import org.nuiton.topia.persistence.TopiaEntity; import org.nuiton.topia.persistence.TopiaIdFactory; import org.nuiton.topia.persistence.TopiaPersistenceContextConstructorParameterSupport; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModel; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModelPaths; import org.nuiton.topia.persistence.script.TopiaSqlScript; import org.nuiton.topia.service.migration.TopiaMigrationService; import org.nuiton.topia.service.sql.blob.TopiaEntitySqlBlobModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModelPaths; import org.nuiton.topia.service.sql.model.TopiaEntitySqlModel; import org.nuiton.topia.service.sql.plan.copy.TopiaEntitySqlCopyPlanModel; import org.nuiton.topia.service.sql.plan.delete.TopiaEntitySqlDeletePlanModel; +import org.nuiton.topia.service.sql.plan.replicate.TopiaEntitySqlReplicatePlanModel; import org.nuiton.topia.service.sql.request.CreateDatabaseRequest; import org.nuiton.topia.service.sql.usage.TopiaEntitySqlUsageModel; @@ -120,6 +121,11 @@ public class ObserveTopiaApplicationContext extends AbstractObserveTopiaApplicat return ObserveTopiaEntitySqlModelResource.get().getCopyPlanModel(); } + @Override + public TopiaEntitySqlReplicatePlanModel getReplicatePlanModel() { + return ObserveTopiaEntitySqlModelResource.get().getReplicatePlanModel(); + } + @Override public TopiaEntitySqlDeletePlanModel getDeletePlanModel() { return ObserveTopiaEntitySqlModelResource.get().getDeletePlanModel(); ===================================== core/persistence/java/src/main/resources/META-INF/persistence/Observe/TopiaEntitySqlCopyPlanModel.json ===================================== The diff for this file was not included because it is too large. ===================================== core/persistence/java/src/main/resources/META-INF/persistence/Observe/TopiaEntitySqlDeletePlanModel.json ===================================== @@ -1,5 +1,5 @@ { - "typeDeletePlans": { + "plans": { "fr.ird.observe.entities.data.ll.common.GearUseFeatures": [ "DELETE FROM ll_common.gearUseFeaturesMeasurement WHERE gearUseFeaturesMeasurement.gearUseFeatures %s;", "DELETE FROM ll_common.gearUseFeatures WHERE gearUseFeatures.topiaId %s;" ===================================== core/persistence/java/src/main/resources/META-INF/persistence/Observe/TopiaEntitySqlReplicatePlanModel.json ===================================== @@ -0,0 +1,1476 @@ +{ + "plans": { + "fr.ird.observe.entities.data.ll.common.GearUseFeatures": [ + { + "gav": "ll_common.gearUseFeatures", + "selectedSql": "SELECT %s FROM ll_common.gearUseFeatures WHERE gearUseFeatures.topiaId %s", + "insertSql": "INSERT INTO ll_common.gearUseFeatures(%s) VALUES (%%s);", + "parentColumnName": "trip", + "columnNames": "topiaid,comment,gear,homeid,lastupdatedate,number,topiacreatedate,topiaversion,trip,usedintrip", + "entryPoint": true + }, + { + "gav": "ll_common.gearUseFeaturesMeasurement", + "selectedSql": "SELECT %s FROM ll_common.gearUseFeaturesMeasurement gearUseFeaturesMeasurement WHERE gearUseFeaturesMeasurement.gearUseFeatures %s", + "insertSql": "INSERT INTO ll_common.gearUseFeaturesMeasurement(%s) VALUES (%%s);", + "parentColumnName": "gearUseFeatures", + "columnNames": "topiaid,gearcharacteristic,gearusefeatures,homeid,lastupdatedate,measurementvalue,topiacreatedate,topiaversion" + } + ], + "fr.ird.observe.entities.data.ll.common.GearUseFeaturesMeasurement": [ + { + "gav": "ll_common.gearUseFeaturesMeasurement", + "selectedSql": "SELECT %s FROM ll_common.gearUseFeaturesMeasurement WHERE gearUseFeaturesMeasurement.topiaId %s", + "insertSql": "INSERT INTO ll_common.gearUseFeaturesMeasurement(%s) VALUES (%%s);", + "parentColumnName": "gearUseFeatures", + "columnNames": "topiaid,gearcharacteristic,gearusefeatures,homeid,lastupdatedate,measurementvalue,topiacreatedate,topiaversion", + "entryPoint": true + } + ], + "fr.ird.observe.entities.data.ll.landing.Landing": [ + { + "gav": "ll_landing.landing", + "selectedSql": "SELECT %s FROM ll_landing.landing WHERE landing.topiaId %s", + "insertSql": "INSERT INTO ll_landing.landing(%s) VALUES (%%s);", + "parentColumnName": "trip", + "columnNames": "topiaid,brokeragecompany,comment,datasource,enddate,harbour,homeid,lastupdatedate,person,processingcompany,shippingcompany,startdate,topiacreatedate,topiaversion,trip,vessel", + "entryPoint": true + }, + { + "gav": "ll_landing.landingPart", + "selectedSql": "SELECT %s FROM ll_landing.landingPart landingPart WHERE landingPart.landing %s", + "insertSql": "INSERT INTO ll_landing.landingPart(%s) VALUES (%%s);", + "parentColumnName": "landing", + "columnNames": "topiaid,categorymax,categorymin,conservation,count,dataquality,homeid,landing,lastupdatedate,onboardprocessing,species,topiacreatedate,topiaversion,weight,weightmeasuremethod" + } + ], + "fr.ird.observe.entities.data.ll.landing.LandingPart": [ + { + "gav": "ll_landing.landingPart", + "selectedSql": "SELECT %s FROM ll_landing.landingPart WHERE landingPart.topiaId %s", + "insertSql": "INSERT INTO ll_landing.landingPart(%s) VALUES (%%s);", + "parentColumnName": "landing", + "columnNames": "topiaid,categorymax,categorymin,conservation,count,dataquality,homeid,landing,lastupdatedate,onboardprocessing,species,topiacreatedate,topiaversion,weight,weightmeasuremethod", + "entryPoint": true + } + ], + "fr.ird.observe.entities.data.ll.logbook.Activity": [ + { + "gav": "ll_logbook.set", + "selectedSql": "SELECT %s FROM ll_logbook.set set INNER JOIN ll_logbook.activity activity ON activity.set = set.topiaId WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.set(%s) VALUES (%%s);", + "columnNames": "topiaid,basketlinelength,basketspersectioncount,branchlinesperbasketcount,comment,haulingbreaks,haulingdirectionsameassetting,haulingendlatitude,haulingendlongitude,haulingendtimestamp,haulingstartlatitude,haulingstartlongitude,haulingstarttimestamp,homeid,lastupdatedate,lengthbetweenbranchlines,lightstickscolor,lightsticksperbasketcount,lightstickstype,lightsticksused,linetype,maxdepthtargeted,monitored,number,settingendlatitude,settingendlongitude,settingendtimestamp,settingshape,settingstartlatitude,settingstartlongitude,settingstarttimestamp,settingvesselspeed,shooterspeed,shooterused,snapweight,swivelweight,timebetweenhooks,topiacreatedate,topiaversion,totalbasketscount,totalhookscount,totallightstickscount,totallinelength,totalsectionscount,weightedsnap,weightedswivel" + }, + { + "gav": "ll_logbook.sample", + "selectedSql": "SELECT %s FROM ll_logbook.sample sample INNER JOIN ll_logbook.activity activity ON activity.sample = sample.topiaId WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.sample(%s) VALUES (%%s);", + "columnNames": "topiaid,comment,homeid,lastupdatedate,latitude,longitude,timestamp,topiacreatedate,topiaversion,trip" + }, + { + "gav": "ll_logbook.activity", + "selectedSql": "SELECT %s FROM ll_logbook.activity WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.activity(%s) VALUES (%%s);", + "parentColumnName": "trip", + "columnNames": "topiaid,comment,currentdirection,currentspeed,dataquality,endtimestamp,fpazone,homeid,lastupdatedate,latitude,longitude,relatedobservedactivity,sample,seasurfacetemperature,set,starttimestamp,topiacreatedate,topiaversion,trip,vesselactivity,wind,winddirection", + "columnsToReplace": "set,sample", + "columnsToDetach": "relatedObservedActivity~ll_observation.activity", + "entryPoint": true + }, + { + "gav": "ll_logbook.baitsComposition", + "selectedSql": "SELECT %s FROM ll_logbook.baitsComposition baitsComposition INNER JOIN ll_logbook.activity activity ON activity.set = baitsComposition.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.baitsComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,baitsettingstatus,baittype,homeid,individualsize,individualweight,lastupdatedate,proportion,set,topiacreatedate,topiaversion" + }, + { + "gav": "ll_logbook.branchlinesComposition", + "selectedSql": "SELECT %s FROM ll_logbook.branchlinesComposition branchlinesComposition INNER JOIN ll_logbook.activity activity ON activity.set = branchlinesComposition.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.branchlinesComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,length,proportion,set,topiacreatedate,topiaversion,toptype,tracelinelength,tracelinetype" + }, + { + "gav": "ll_logbook.catch", + "selectedSql": "SELECT %s FROM ll_logbook.catch catch INNER JOIN ll_logbook.activity activity ON activity.set = catch.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.catch(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,acquisitionmode,beatdiameter,catchfate,catchhealthstatus,comment,count,countdepredated,depredated,depredatedproportion,discardhealthstatus,homeid,hookwhendiscarded,lastupdatedate,number,onboardprocessing,photoreferences,set,set_idx,species,tagnumber,topiacreatedate,topiaversion,totalweight,weightmeasuremethod" + }, + { + "gav": "ll_logbook.floatlinesComposition", + "selectedSql": "SELECT %s FROM ll_logbook.floatlinesComposition floatlinesComposition INNER JOIN ll_logbook.activity activity ON activity.set = floatlinesComposition.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.floatlinesComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,length,linetype,proportion,set,topiacreatedate,topiaversion" + }, + { + "gav": "ll_logbook.hooksComposition", + "selectedSql": "SELECT %s FROM ll_logbook.hooksComposition hooksComposition INNER JOIN ll_logbook.activity activity ON activity.set = hooksComposition.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.hooksComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,hookoffset,hooksize,hooktype,lastupdatedate,proportion,set,topiacreatedate,topiaversion" + }, + { + "gav": "ll_logbook.samplePart", + "selectedSql": "SELECT %s FROM ll_logbook.samplePart samplePart INNER JOIN ll_logbook.activity activity ON activity.sample = samplePart.sample WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.samplePart(%s) VALUES (%%s);", + "parentColumnName": "sample", + "columnNames": "topiaid,acquisitionmode,count,homeid,lastupdatedate,length,lengthmeasuremethod,sample,sample_idx,sex,sizemeasuretype,species,tagnumber,topiacreatedate,topiaversion,weight,weightmeasuremethod,weightmeasuretype" + }, + { + "gav": "ll_logbook.set_mitigationtype", + "selectedSql": "SELECT %s FROM ll_logbook.set set INNER JOIN ll_logbook.activity activity ON activity.set = set.topiaId WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.set_mitigationtype(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "mitigationtype,set", + "columnsToReplace": "set" + }, + { + "gav": "ll_logbook.catch_predator", + "selectedSql": "SELECT %s FROM ll_logbook.catch catch INNER JOIN ll_logbook.activity activity ON activity.set = catch.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.catch_predator(%s) VALUES (%%s);", + "parentColumnName": "catch", + "columnNames": "catch,species", + "columnsToReplace": "catch" + } + ], + "fr.ird.observe.entities.data.ll.logbook.BaitsComposition": [ + { + "gav": "ll_logbook.baitsComposition", + "selectedSql": "SELECT %s FROM ll_logbook.baitsComposition WHERE baitsComposition.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.baitsComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,baitsettingstatus,baittype,homeid,individualsize,individualweight,lastupdatedate,proportion,set,topiacreatedate,topiaversion", + "entryPoint": true + } + ], + "fr.ird.observe.entities.data.ll.logbook.BranchlinesComposition": [ + { + "gav": "ll_logbook.branchlinesComposition", + "selectedSql": "SELECT %s FROM ll_logbook.branchlinesComposition WHERE branchlinesComposition.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.branchlinesComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,length,proportion,set,topiacreatedate,topiaversion,toptype,tracelinelength,tracelinetype", + "entryPoint": true + } + ], + "fr.ird.observe.entities.data.ll.logbook.Catch": [ + { + "gav": "ll_logbook.catch", + "selectedSql": "SELECT %s FROM ll_logbook.catch WHERE catch.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.catch(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": 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"topiaid,comment,homeid,lastupdatedate,latitude,longitude,timestamp,topiacreatedate,topiaversion,trip", + "entryPoint": true + }, + { + "gav": "ll_logbook.samplePart", + "selectedSql": "SELECT %s FROM ll_logbook.samplePart samplePart WHERE samplePart.sample %s", + "insertSql": "INSERT INTO ll_logbook.samplePart(%s) VALUES (%%s);", + "parentColumnName": "sample", + "columnNames": "topiaid,acquisitionmode,count,homeid,lastupdatedate,length,lengthmeasuremethod,sample,sample_idx,sex,sizemeasuretype,species,tagnumber,topiacreatedate,topiaversion,weight,weightmeasuremethod,weightmeasuretype" + } + ], + "fr.ird.observe.entities.data.ll.logbook.SamplePart": [ + { + "gav": "ll_logbook.samplePart", + "selectedSql": "SELECT %s FROM ll_logbook.samplePart WHERE samplePart.topiaId %s", + "insertSql": "INSERT INTO ll_logbook.samplePart(%s) VALUES (%%s);", + "parentColumnName": "sample", + "columnNames": 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ll_logbook.baitsComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,baitsettingstatus,baittype,homeid,individualsize,individualweight,lastupdatedate,proportion,set,topiacreatedate,topiaversion" + }, + { + "gav": "ll_logbook.branchlinesComposition", + "selectedSql": "SELECT %s FROM ll_logbook.branchlinesComposition branchlinesComposition WHERE branchlinesComposition.set %s", + "insertSql": "INSERT INTO ll_logbook.branchlinesComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,length,proportion,set,topiacreatedate,topiaversion,toptype,tracelinelength,tracelinetype" + }, + { + "gav": "ll_logbook.catch", + "selectedSql": "SELECT %s FROM ll_logbook.catch catch WHERE catch.set %s", + "insertSql": "INSERT INTO ll_logbook.catch(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": 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ll_observation.set(%s) VALUES (%%s);", + "columnNames": "topiaid,basketspersectioncount,branchlinesperbasketcount,comment,haulingbreaks,haulingdirectionsameassetting,haulingendlatitude,haulingendlongitude,haulingendtimestamp,haulingstartlatitude,haulingstartlongitude,haulingstarttimestamp,homeid,lastupdatedate,lightstickscolor,lightsticksperbasketcount,lightstickstype,linetype,maxdepthtargeted,monitored,number,settingendlatitude,settingendlongitude,settingendtimestamp,settingshape,settingstartlatitude,settingstartlongitude,settingstarttimestamp,settingvesselspeed,shooterspeed,shooterused,snapweight,swivelweight,timebetweenhooks,topiacreatedate,topiaversion,totalbasketscount,totalhookscount,totalsectionscount,weightedsnap,weightedswivel" + }, + { + "gav": "ll_observation.activity", + "selectedSql": "SELECT %s FROM ll_observation.activity WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_observation.activity(%s) VALUES (%%s);", + "parentColumnName": "trip", + "columnNames": 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"topiaid,activity,data,datafilename,datalocation,homeid,lastupdatedate,sensorbrand,sensordataformat,sensorserialno,sensortype,topiacreatedate,topiaversion", + "useBlob": true + }, + { + "gav": "ll_observation.baitsComposition", + "selectedSql": "SELECT %s FROM ll_observation.baitsComposition baitsComposition INNER JOIN ll_observation.activity activity ON activity.set = baitsComposition.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_observation.baitsComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,baitsettingstatus,baittype,homeid,individualsize,individualweight,lastupdatedate,proportion,set,topiacreatedate,topiaversion" + }, + { + "gav": "ll_observation.branchlinesComposition", + "selectedSql": "SELECT %s FROM ll_observation.branchlinesComposition branchlinesComposition INNER JOIN ll_observation.activity activity ON activity.set = branchlinesComposition.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_observation.branchlinesComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,length,proportion,set,topiacreatedate,topiaversion,toptype,tracelinelength,tracelinetype" + }, + { + "gav": "ll_observation.floatlinesComposition", + "selectedSql": "SELECT %s FROM ll_observation.floatlinesComposition floatlinesComposition INNER JOIN ll_observation.activity activity ON activity.set = floatlinesComposition.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO ll_observation.floatlinesComposition(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,length,linetype,proportion,set,topiacreatedate,topiaversion" + }, + { + "gav": "ll_observation.hooksComposition", + "selectedSql": "SELECT %s FROM ll_observation.hooksComposition hooksComposition INNER JOIN ll_observation.activity activity ON activity.set = hooksComposition.set WHERE activity.topiaId %s", + "insertSql": "INSERT INTO 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ps_observation.objectObservedSpecies(%s) VALUES (%%s);", + "parentColumnName": "floatingObject", + "columnNames": "topiaid,count,floatingobject,homeid,lastupdatedate,species,speciesstatus,topiacreatedate,topiaversion" + }, + { + "gav": "ps_observation.objectSchoolEstimate", + "selectedSql": "SELECT %s FROM ps_observation.objectSchoolEstimate objectSchoolEstimate INNER JOIN ps_observation.floatingObject floatingObject ON floatingObject.topiaId = objectSchoolEstimate.floatingObject INNER JOIN ps_observation.activity activity ON activity.topiaId = floatingObject.activity WHERE activity.route %s", + "insertSql": "INSERT INTO ps_observation.objectSchoolEstimate(%s) VALUES (%%s);", + "parentColumnName": "floatingObject", + "columnNames": "topiaid,floatingobject,homeid,lastupdatedate,species,topiacreatedate,topiaversion,totalweight,weightmeasuremethod" + }, + { + "gav": "ps_observation.schoolEstimate", + "selectedSql": "SELECT %s FROM ps_observation.schoolEstimate schoolEstimate INNER JOIN 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ps_observation.set(%s) VALUES (%%s);", + "updateReverseAssociationSql": "UPDATE ps_observation.activity activity SET activity.set = '%s' WHERE activity.topiaId = '%'", + "columnNames": "topiaid,comment,currentdirection,currentmeasuredepth,currentspeed,endtimestamp,haulingendtimestamp,haulingstarttimestamp,homeid,lastupdatedate,maxgeardepth,reasonfornullset,schoolmeandepth,schoolthickness,schooltopdepth,schooltype,starttime,supportvesselname,topiacreatedate,topiaversion", + "entryPoint": true + }, + { + "gav": "ps_observation.catch", + "selectedSql": "SELECT %s FROM ps_observation.catch catch WHERE catch.set %s", + "insertSql": "INSERT INTO ps_observation.catch(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": 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%s", + "insertSql": "INSERT INTO ps_observation.schoolEstimate(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,homeid,lastupdatedate,meanweight,set,species,topiacreatedate,topiaversion,totalweight,weightmeasuremethod" + }, + { + "gav": "ps_observation.sample", + "selectedSql": "SELECT %s FROM ps_observation.sample sample WHERE sample.set %s", + "insertSql": "INSERT INTO ps_observation.sample(%s) VALUES (%%s);", + "parentColumnName": "set", + "columnNames": "topiaid,comment,homeid,lastupdatedate,set,topiacreatedate,topiaversion" + }, + { + "gav": "ps_observation.sampleMeasure", + "selectedSql": "SELECT %s FROM ps_observation.sampleMeasure sampleMeasure INNER JOIN ps_observation.sample sample ON sample.topiaId = sampleMeasure.sample WHERE sample.set %s", + "insertSql": "INSERT INTO ps_observation.sampleMeasure(%s) VALUES (%%s);", + "parentColumnName": "sample", + "columnNames": "topiaid,acquisitionmode,count,homeid,islengthcomputed,isweightcomputed,lastupdatedate,length,lengthmeasuremethod,picturesreferences,sample,sample_idx,sex,sizemeasuretype,species,speciesfate,tagnumber,topiacreatedate,topiaversion,weight,weightmeasuremethod,weightmeasuretype" + } + ], + "fr.ird.observe.entities.data.ps.observation.TransmittingBuoy": [ + { + "gav": "ps_observation.transmittingBuoy", + "selectedSql": "SELECT %s FROM ps_observation.transmittingBuoy WHERE transmittingBuoy.topiaId %s", + "insertSql": "INSERT INTO ps_observation.transmittingBuoy(%s) VALUES (%%s);", + "parentColumnName": "floatingObject", + "columnNames": "topiaid,code,comment,country,floatingobject,homeid,lastupdatedate,latitude,longitude,topiacreatedate,topiaversion,transmittingbuoyoperation,transmittingbuoyownership,transmittingbuoytype,vessel", + "entryPoint": true + } + ] + } +} \ No newline at end of file ===================================== core/persistence/java/src/test/java/fr/ird/observe/spi/script/UpdateLastUpdateDateFieldScriptTest.java ===================================== @@ -23,12 +23,10 @@ package fr.ird.observe.spi.script; */ import fr.ird.observe.entities.ObserveTopiaEntitySqlModelResource; -import fr.ird.observe.spi.script.ToolkitEntitySqlScriptModel; -import fr.ird.observe.spi.script.UpdateLastUpdateDateFieldScript; import org.junit.Assert; import org.junit.Before; import org.junit.Test; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModel; import java.util.Date; import java.util.List; ===================================== core/persistence/java/src/test/java/fr/ird/observe/spi/script/UpdateLastUpdateDateTableScriptTest.java ===================================== @@ -23,12 +23,10 @@ package fr.ird.observe.spi.script; */ import fr.ird.observe.entities.ObserveTopiaEntitySqlModelResource; -import fr.ird.observe.spi.script.ToolkitEntitySqlScriptModel; -import fr.ird.observe.spi.script.UpdateLastUpdateDateTableScript; import org.junit.Assert; import org.junit.Before; import org.junit.Test; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModel; import java.util.Date; import java.util.List; ===================================== core/persistence/test/src/main/java/fr/ird/observe/persistence/test/PersistenceTestSupportRead.java ===================================== @@ -33,8 +33,8 @@ import fr.ird.observe.test.spi.DatabaseVersionConfiguration; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; import org.junit.ClassRule; -import org.nuiton.topia.persistence.metadata.TopiaMetadataEntity; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataEntity; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModel; import org.nuiton.topia.service.sql.model.TopiaEntitySqlModel; import java.util.List; ===================================== core/persistence/test/src/main/java/fr/ird/observe/persistence/test/PersistenceTestSupportWrite.java ===================================== @@ -39,7 +39,7 @@ import org.junit.After; import org.junit.Assert; import org.junit.ClassRule; import org.junit.Rule; -import org.nuiton.topia.persistence.metadata.TopiaMetadataEntity; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataEntity; import org.nuiton.topia.service.sql.model.TopiaEntitySqlDescriptors; import org.nuiton.topia.service.sql.model.TopiaEntitySqlModel; import org.nuiton.topia.service.sql.plan.copy.TopiaEntitySqlCopyPlan; ===================================== core/persistence/test/src/test/java/fr/ird/observe/persistence/test/DefinitionContentTest.java ===================================== @@ -29,7 +29,7 @@ import fr.ird.observe.spi.context.DtoEntityContext; import org.junit.Assert; import org.junit.Before; import org.junit.Test; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModel; /** * Created on 22/11/2021. ===================================== core/persistence/test/src/test/java/fr/ird/observe/persistence/test/PersistenceModelWriteTest.java ===================================== @@ -111,7 +111,7 @@ public class PersistenceModelWriteTest extends PersistenceTestSupportWrite { TopiaEntitySqlCopyPlan copyPlan = copyPlan(classifier, applicationContext); createRequest(classifier); if (!classifier.equals(CLASSIFIER_REFERENTIAL)) { - request.addReplicateTableRequest(applicationContext.getSqlService().getCopyPlanModel().getStandalonePlan(), null); + request.addCopyTableRequest(applicationContext.getSqlService().getCopyPlanModel().getStandalonePlan(), null); selectArgument = TopiaEntitySqlSelectArgument.of(tripId); } importScriptAndAssertCount(applicationContext, copyPlan, selectArgument, expectedCount); @@ -136,7 +136,7 @@ public class PersistenceModelWriteTest extends PersistenceTestSupportWrite { } void importScriptAndAssertCount(ObserveTopiaApplicationContext applicationContext, TopiaEntitySqlCopyPlan copyPlan, TopiaEntitySqlSelectArgument selectArgument, Map<String, Long> expectedResults) throws Exception { - request.addReplicateTableRequest(copyPlan, selectArgument); + request.addCopyTableRequest(copyPlan, selectArgument); TopiaSqlScript script = applicationContext.getSqlService().consume(request); log.info(String.format("Generated script: %s", scriptFile)); File targetDatabaseDirectory = new File(localTestMethodResource.getTestDirectory(), "import-" + scriptFile.getName()); ===================================== core/persistence/test/src/test/java/fr/ird/observe/persistence/test/ValidationContentTest.java ===================================== @@ -29,7 +29,7 @@ import fr.ird.observe.spi.context.DtoEntityContext; import org.junit.Assert; import org.junit.Before; import org.junit.Test; -import org.nuiton.topia.persistence.metadata.TopiaMetadataModel; +import org.nuiton.topia.service.sql.metadata.TopiaMetadataModel; /** * Created on 22/11/2021. View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/commit/df53fa17927f568fea595513b… -- View it on GitLab: https://gitlab.com/ultreiaio/ird-observe/-/commit/df53fa17927f568fea595513b… You're receiving this email because of your account on gitlab.com.

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