r105 - trunk/exports - Isis-fish-data-commits

14 Apr 2009

Author: jcouteau
Date: 2009-04-14 17:41:56 +0000 (Tue, 14 Apr 2009)
New Revision: 105

Added:
   trunk/exports/SensitivityBiomassReferenceY9.java
   trunk/exports/SensitivityCapturesWeightRelativeY4.java
   trunk/exports/SensitivityCapturesWeightY1.java
   trunk/exports/SensitivityGenitorBiomassRelativeY5.java
Removed:
   trunk/exports/SensitivityCapturesPoids.java
Modified:
   trunk/exports/SensitivityGenitorBiomassY2.java
Log:
Adding exports. Fixing bugs on exports.

Added: trunk/exports/SensitivityBiomassReferenceY9.java
===================================================================

--- trunk/exports/SensitivityBiomassReferenceY9.java	                        (rev 0)
+++ trunk/exports/SensitivityBiomassReferenceY9.java	2009-04-14 17:41:56 UTC (rev 105)
@@ -0,0 +1,80 @@
+package exports;
+
+import static org.codelutin.i18n.I18n._;
+
+import java.io.File;
+import java.io.Writer;
+
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
+import org.codelutin.math.matrix.MatrixIterator;
+import org.codelutin.math.matrix.MatrixND;
+
+import scripts.ResultName;
+import fr.ifremer.isisfish.datastore.ResultStorage;
+import fr.ifremer.isisfish.datastore.SimulationStorage;
+import fr.ifremer.isisfish.entities.Population;
+import fr.ifremer.isisfish.export.SensitivityExport;
+import fr.ifremer.isisfish.types.Date;
+import fr.ifremer.isisfish.util.Doc;
+
+@Doc("Doc for SensitivityBiomass")
+public class SensitivityBiomassReferenceY9 implements SensitivityExport {
+
+    /** to use log facility, just put in your code: log.info("..."); */
+    static private Log log = LogFactory.getLog(SensitivityBiomassReferenceY9.class);
+
+    protected String[] necessaryResult = { ResultName.MATRIX_BIOMASS };
+
+    @Doc("Population")
+    public Population param_pop;
+    
+    @Doc("Path to the reference simulation exports")
+    public String param_referenceExports;
+
+    @Override
+    public void export(SimulationStorage simulation, Writer out)
+            throws Exception {
+        File referenceExports=new File (param_referenceExports);
+        Date lastDate = simulation.getResultStorage().getLastDate();
+        double biomass = 0.0;
+        for (Population pop : simulation.getParameter().getPopulations()) {
+            if (pop.getName().equals(param_pop.getName())) {
+                MatrixND mat = simulation.getResultStorage().getMatrix(pop,
+                        ResultName.MATRIX_BIOMASS);
+                for (MatrixIterator i = mat.iterator(); i.hasNext();) {
+                    i.next();
+                    Object[] sems = i.getSemanticsCoordinates();
+                    Date date = (Date) sems[0];
+
+                    if (date.afterOrEquals(lastDate)) {
+                        biomass = biomass + i.getValue();
+                    }
+                }
+            }
+        }
+        out.write(Double.toString(biomass));
+
+    }
+
+    @Override
+    public String getDescription() {
+        return _("Biomass for the last time step. Biomass is the sum on the groups and zones");
+    }
+
+    @Override
+    public String getExportFilename() {
+        return "SensitivityBiomass";
+    }
+
+    @Override
+    public String getExtensionFilename() {
+        return ".csv";
+    }
+
+    @Override
+    public String[] getNecessaryResult() {
+        return this.necessaryResult;
+    }
+
+}

Deleted: trunk/exports/SensitivityCapturesPoids.java
===================================================================
--- trunk/exports/SensitivityCapturesPoids.java	2009-04-13 11:42:54 UTC (rev 104)
+++ trunk/exports/SensitivityCapturesPoids.java	2009-04-14 17:41:56 UTC (rev 105)
@@ -1,78 +0,0 @@
-package exports;
-
-import static org.codelutin.i18n.I18n._;
-
-import java.io.Writer;
-
-import org.apache.commons.logging.Log;
-import org.apache.commons.logging.LogFactory;
-import org.codelutin.math.matrix.MatrixIterator;
-import org.codelutin.math.matrix.MatrixND;
-
-import scripts.ResultName;
-import fr.ifremer.isisfish.datastore.SimulationStorage;
-import fr.ifremer.isisfish.entities.Population;
-import fr.ifremer.isisfish.export.SensitivityExport;
-import fr.ifremer.isisfish.types.Date;
-import fr.ifremer.isisfish.util.Doc;
-
-@Doc("Doc for SensitivityCapturesPoids")
-public class SensitivityCapturesPoids implements SensitivityExport {
-
-    /** to use log facility, just put in your code: log.info("..."); */
-    static private Log log = LogFactory.getLog(SensitivityCapturesPoids.class);
-
-    protected String[] necessaryResult = { ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET_PER_ZONE_POP };
-
-    @Doc("Population")
-    public Population param_pop;
-
-    @Override
-    public void export(SimulationStorage simulation, Writer out)
-            throws Exception {
-        Date lastDate = simulation.getResultStorage().getLastDate();
-        Double capturesWeight = 0.0;
-
-        for (Population pop : simulation.getParameter().getPopulations()) {
-            if (pop.getName().equals(param_pop.getName())) {
-                for (Date date = new Date(0); !date.after(lastDate); date = date
-                        .next()) {
-                    MatrixND mat = simulation
-                            .getResultStorage()
-                            .getMatrix(
-                                    date,
-                                    pop,
-                                    ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET_PER_ZONE_POP);
-                    if (mat != null) { // can be null if simulation is stopped before last year simulation
-                        mat = mat.sumOverDim(0); //sum on strategy
-                        for (MatrixIterator i = mat.iterator(); i.hasNext();) {
-                            i.next();
-                            capturesWeight = capturesWeight + i.getValue();
-                        }
-                    }
-                }
-            }
-        }
-    }
-
-    @Override
-    public String getDescription() {
-        return _("Captures in weight for the last year for the popage population. Captures is the sum of zones, groups, metiers and strategies");
-    }
-
-    @Override
-    public String getExportFilename() {
-        return "SensitivityCapturesPoids";
-    }
-
-    @Override
-    public String getExtensionFilename() {
-        return ".csv";
-    }
-
-    @Override
-    public String[] getNecessaryResult() {
-        return this.necessaryResult;
-    }
-
-}

Added: trunk/exports/SensitivityCapturesWeightRelativeY4.java
===================================================================
--- trunk/exports/SensitivityCapturesWeightRelativeY4.java	                        (rev 0)
+++ trunk/exports/SensitivityCapturesWeightRelativeY4.java	2009-04-14 17:41:56 UTC (rev 105)
@@ -0,0 +1,104 @@
+ppackage exports;
+
+import static org.codelutin.i18n.I18n._;
+
+import java.io.Writer;
+
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
+import org.codelutin.math.matrix.MatrixIterator;
+import org.codelutin.math.matrix.MatrixND;
+
+import scripts.ResultName;
+import fr.ifremer.isisfish.datastore.SimulationStorage;
+import fr.ifremer.isisfish.entities.Population;
+import fr.ifremer.isisfish.export.SensitivityExport;
+import fr.ifremer.isisfish.types.Date;
+import fr.ifremer.isisfish.util.Doc;
+
+@Doc("Doc for SensitivityCapturesPoids")
+public class SensitivityCapturesWeightRelativeY4 implements SensitivityExport {
+
+    /** to use log facility, just put in your code: log.info("..."); */
+    static private Log log = LogFactory.getLog(SensitivityCapturesWeightRelativeY4.class);
+
+    protected String[] necessaryResult = { ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET_PER_ZONE_POP };
+
+    @Doc("Population")
+    public Population param_pop;
+
+    @Override
+    public void export(SimulationStorage simulation, Writer out)
+            throws Exception {
+        Date lastDate = simulation.getResultStorage().getLastDate();
+        Double capturesWeight = 0.0;
+        Double capturesWeightfirst = 0.0;
+
+        for (Population pop : simulation.getParameter().getPopulations()) {
+            if (pop.getName().equals(param_pop.getName())) {
+                for (Date date = new Date(0); !date.after(lastDate); date = date
+                        .next()) {
+                    MatrixND mat = simulation
+                            .getResultStorage()
+                            .getMatrix(
+                                    date,
+                                    pop,
+                                    ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET_PER_ZONE_POP);
+                    if (mat != null) { // can be null if simulation is stopped before last year simulation
+                        mat = mat.sumOverDim(0); //sum on strategy
+                        for (MatrixIterator i = mat.iterator(); i.hasNext();) {
+                            i.next();
+                            double val = i.getValue();
+                            capturesWeight = capturesWeight + val;
+                        }
+                    }
+                }
+            }
+        }
+        
+        for (Population pop : simulation.getParameter().getPopulations()) {
+            if (pop.getName().equals(param_pop.getName())) {
+                for (Date date = new Date(0); date.beforeOrEquals(new Date(11)); date = date
+                        .next()) {
+                    MatrixND mat = simulation
+                            .getResultStorage()
+                            .getMatrix(
+                                    date,
+                                    pop,
+                                    ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET_PER_ZONE_POP);
+                    if (mat != null) { // can be null if simulation is stopped before last year simulation
+                        mat = mat.sumOverDim(0); //sum on strategy
+                        for (MatrixIterator i = mat.iterator(); i.hasNext();) {
+                            i.next();
+                            double val = i.getValue();
+                            capturesWeightfirst = capturesWeightfirst + val;
+                        }
+                    }
+                }
+            }
+        }
+        
+        out.write(Double.toString(capturesWeight/capturesWeightfirst));
+    }
+
+    @Override
+    public String getDescription() {
+        return _("Captures in weight for the last year for the popage population. Captures is the sum of zones, groups, metiers and strategies");
+    }
+
+    @Override
+    public String getExportFilename() {
+        return "SensitivityCapturesWeightRelative";
+    }
+
+    @Override
+    public String getExtensionFilename() {
+        return ".csv";
+    }
+
+    @Override
+    public String[] getNecessaryResult() {
+        return this.necessaryResult;
+    }
+
+}

Copied: trunk/exports/SensitivityCapturesWeightY1.java (from rev 102, trunk/exports/SensitivityCapturesPoids.java)
===================================================================
--- trunk/exports/SensitivityCapturesWeightY1.java	                        (rev 0)
+++ trunk/exports/SensitivityCapturesWeightY1.java	2009-04-14 17:41:56 UTC (rev 105)
@@ -0,0 +1,80 @@
+package exports;
+
+import static org.codelutin.i18n.I18n._;
+
+import java.io.Writer;
+
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
+import org.codelutin.math.matrix.MatrixIterator;
+import org.codelutin.math.matrix.MatrixND;
+
+import scripts.ResultName;
+import fr.ifremer.isisfish.datastore.SimulationStorage;
+import fr.ifremer.isisfish.entities.Population;
+import fr.ifremer.isisfish.export.SensitivityExport;
+import fr.ifremer.isisfish.types.Date;
+import fr.ifremer.isisfish.util.Doc;
+
+@Doc("Doc for SensitivityCapturesPoids")
+public class SensitivityCapturesWeightY1 implements SensitivityExport {
+
+    /** to use log facility, just put in your code: log.info("..."); */
+    static private Log log = LogFactory.getLog(SensitivityCapturesWeightY1.class);
+
+    protected String[] necessaryResult = { ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET_PER_ZONE_POP };
+
+    @Doc("Population")
+    public Population param_pop;
+
+    @Override
+    public void export(SimulationStorage simulation, Writer out)
+            throws Exception {
+        Date lastDate = simulation.getResultStorage().getLastDate();
+        Double capturesWeight = 0.0;
+
+        for (Population pop : simulation.getParameter().getPopulations()) {
+            if (pop.getName().equals(param_pop.getName())) {
+                for (Date date = new Date(0); !date.after(lastDate); date = date
+                        .next()) {
+                    MatrixND mat = simulation
+                            .getResultStorage()
+                            .getMatrix(
+                                    date,
+                                    pop,
+                                    ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET_PER_ZONE_POP);
+                    if (mat != null) { // can be null if simulation is stopped before last year simulation
+                        mat = mat.sumOverDim(0); //sum on strategy
+                        for (MatrixIterator i = mat.iterator(); i.hasNext();) {
+                            i.next();
+                            double val = i.getValue();
+                            capturesWeight = capturesWeight + val;
+                        }
+                    }
+                }
+            }
+        }
+        out.write(Double.toString(capturesWeight));
+    }
+
+    @Override
+    public String getDescription() {
+        return _("Captures in weight for the last year for the popage population. Captures is the sum of zones, groups, metiers and strategies");
+    }
+
+    @Override
+    public String getExportFilename() {
+        return "SensitivityCapturesWeight";
+    }
+
+    @Override
+    public String getExtensionFilename() {
+        return ".csv";
+    }
+
+    @Override
+    public String[] getNecessaryResult() {
+        return this.necessaryResult;
+    }
+
+}


Property changes on: trunk/exports/SensitivityCapturesWeightY1.java
___________________________________________________________________
Name: svn:mergeinfo
   + 

Added: trunk/exports/SensitivityGenitorBiomassRelativeY5.java
===================================================================
--- trunk/exports/SensitivityGenitorBiomassRelativeY5.java	                        (rev 0)
+++ trunk/exports/SensitivityGenitorBiomassRelativeY5.java	2009-04-14 17:41:56 UTC (rev 105)
@@ -0,0 +1,99 @@
+package exports;
+
+import static org.codelutin.i18n.I18n._;
+
+import java.io.Writer;
+
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
+import org.codelutin.math.matrix.MatrixIterator;
+import org.codelutin.math.matrix.MatrixND;
+
+import scripts.ResultName;
+import fr.ifremer.isisfish.datastore.SimulationStorage;
+import fr.ifremer.isisfish.entities.Population;
+import fr.ifremer.isisfish.entities.PopulationGroup;
+import fr.ifremer.isisfish.export.SensitivityExport;
+import fr.ifremer.isisfish.types.Date;
+import fr.ifremer.isisfish.util.Doc;
+
+@Doc("Doc for SensitivityBiomass")
+public class SensitivityGenitorBiomassRelativeY5 implements SensitivityExport {
+
+    /** to use log facility, just put in your code: log.info("..."); */
+    static private Log log = LogFactory
+            .getLog(SensitivityGenitorBiomassRelativeY5.class);
+
+    protected String[] necessaryResult = { ResultName.MATRIX_BIOMASS };
+
+    @Doc("Population")
+    public Population param_pop;
+
+    @Override
+    public void export(SimulationStorage simulation, Writer out)
+            throws Exception {
+        Date lastDate = simulation.getResultStorage().getLastDate();
+        Date firstDate = new Date (11);
+        double biomass = 0.0;
+        double firstbiomass = 0.0;
+        
+        for (Population pop : simulation.getParameter().getPopulations()) {
+            if (pop.getName().equals(param_pop.getName())) {
+                MatrixND mat = simulation.getResultStorage().getMatrix(pop,
+                        ResultName.MATRIX_BIOMASS);
+                for (MatrixIterator i = mat.iterator(); i.hasNext();) {
+                    i.next();
+                    Object[] sems = i.getSemanticsCoordinates();
+                    Date date = (Date) sems[0];
+                    PopulationGroup group = (PopulationGroup) sems[1];
+
+                    if (date.afterOrEquals(lastDate)) {
+                        biomass = biomass + i.getValue()
+                                * group.getReproductionRate();
+                    }
+                }
+            }
+        }
+
+        //Calculate the biomass on december of first year
+
+        for (Population pop : simulation.getParameter().getPopulations()) {
+            if (pop.getName().equals(param_pop.getName())) {
+                MatrixND mat = simulation.getResultStorage().getMatrix(pop,
+                        ResultName.MATRIX_BIOMASS);
+                for (MatrixIterator i = mat.iterator(); i.hasNext();) {
+                    i.next();
+                    Object[] sems = i.getSemanticsCoordinates();
+                    Date date = (Date) sems[0];
+
+                    if (date.equals(firstDate)) {
+                        firstbiomass = firstbiomass + i.getValue();
+                    }
+                }
+            }
+        }
+
+        out.write(Double.toString(biomass / firstbiomass));
+    }
+
+    @Override
+    public String getDescription() {
+        return _("Biomass of the genitors for the last time step. Biomass is the sum on the groups and zones");
+    }
+
+    @Override
+    public String getExportFilename() {
+        return "SensitivityGenitorBiomassRelative";
+    }
+
+    @Override
+    public String getExtensionFilename() {
+        return ".csv";
+    }
+
+    @Override
+    public String[] getNecessaryResult() {
+        return this.necessaryResult;
+    }
+
+}
\ No newline at end of file

Modified: trunk/exports/SensitivityGenitorBiomassY2.java
===================================================================
--- trunk/exports/SensitivityGenitorBiomassY2.java	2009-04-13 11:42:54 UTC (rev 104)
+++ trunk/exports/SensitivityGenitorBiomassY2.java	2009-04-14 17:41:56 UTC (rev 105)
@@ -50,7 +50,6 @@
             }
         }
         out.write(Double.toString(biomass));
-
     }
 
     @Override

    

r105 - trunk/exports

jcouteau＠users.labs.libre-entreprise.org

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