r1753 - in trunk: tutti-persistence/src/main/java/fr/ifremer/tutti/persistence tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri tutti-service/src/test/resources/pupitri - Tutti-commits

5 May 2014

Author: tchemit
Date: 2014-05-05 17:00:37 +0200 (Mon, 05 May 2014)
New Revision: 1753

Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1753

Log:
merge from refs #5032 (version 3.4.1)

Added:
   trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java
   trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java
   trunk/tutti-service/src/test/resources/pupitri/ano-5032.car
   trunk/tutti-service/src/test/resources/pupitri/ano-5032.tnk
   trunk/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol
Removed:
   trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java
Modified:
   trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java
   trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java
   trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java
   trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java
   trunk/tutti-service/src/test/resources/pupitri/ano-3898.car

Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java
===================================================================

--- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java	2014-05-05 14:59:13 UTC (rev 1752)
+++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java	2014-05-05 15:00:37 UTC (rev 1753)
@@ -4,6 +4,7 @@
  * #%L
  * Tutti :: Persistence API
  * $Id$
+ * $Id$
  * $HeadURL$
  * %%
  * Copyright (C) 2012 Ifremer
@@ -622,28 +623,32 @@
 
         Map<String, Species> map = TuttiEntities.splitByTaxonId(allReferentSpecies);
 
-        Iterator<SpeciesProtocol> iterator = protocol.getSpecies().iterator();
-        while (iterator.hasNext()) {
-            SpeciesProtocol speciesProtocol = iterator.next();
-            String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId());
-            Species species = map.get(taxonId);
-            if (species == null) {
-                if (log.isWarnEnabled()) {
-                    log.warn("Could not find protocol species " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential.");
+        if (!protocol.isSpeciesEmpty()) {
+            Iterator<SpeciesProtocol> iterator = protocol.getSpecies().iterator();
+            while (iterator.hasNext()) {
+                SpeciesProtocol speciesProtocol = iterator.next();
+                String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId());
+                Species species = map.get(taxonId);
+                if (species == null) {
+                    if (log.isWarnEnabled()) {
+                        log.warn("Could not find protocol species " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential.");
+                    }
+                    iterator.remove();
                 }
-                iterator.remove();
             }
         }
-        iterator = protocol.getBenthos().iterator();
-        while (iterator.hasNext()) {
-            SpeciesProtocol speciesProtocol = iterator.next();
-            String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId());
-            Species species = map.get(taxonId);
-            if (species == null) {
-                if (log.isWarnEnabled()) {
-                    log.warn("Could not find protocol benthos " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential.");
+        if (!protocol.isBenthosEmpty()) {
+            Iterator<SpeciesProtocol> iterator = protocol.getBenthos().iterator();
+            while (iterator.hasNext()) {
+                SpeciesProtocol speciesProtocol = iterator.next();
+                String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId());
+                Species species = map.get(taxonId);
+                if (species == null) {
+                    if (log.isWarnEnabled()) {
+                        log.warn("Could not find protocol benthos " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential.");
+                    }
+                    iterator.remove();
                 }
-                iterator.remove();
             }
         }
         return protocol;
@@ -917,20 +922,24 @@
 
             Map<Integer, String> surveyCodeByTaxonId = Maps.newTreeMap();
 
-            for (SpeciesProtocol speciesProtocol : protocol.getSpecies()) {
-                String surveyCode = speciesProtocol.getSpeciesSurveyCode();
-                if (StringUtils.isNotBlank(surveyCode)) {
-                    Integer taxonId =
-                            speciesProtocol.getSpeciesReferenceTaxonId();
-                    surveyCodeByTaxonId.put(taxonId, surveyCode);
+            if (!protocol.isSpeciesEmpty()) {
+                for (SpeciesProtocol speciesProtocol : protocol.getSpecies()) {
+                    String surveyCode = speciesProtocol.getSpeciesSurveyCode();
+                    if (StringUtils.isNotBlank(surveyCode)) {
+                        Integer taxonId =
+                                speciesProtocol.getSpeciesReferenceTaxonId();
+                        surveyCodeByTaxonId.put(taxonId, surveyCode);
+                    }
                 }
             }
-            for (SpeciesProtocol speciesProtocol : protocol.getBenthos()) {
-                String surveyCode = speciesProtocol.getSpeciesSurveyCode();
-                if (StringUtils.isNotBlank(surveyCode)) {
-                    Integer taxonId =
-                            speciesProtocol.getSpeciesReferenceTaxonId();
-                    surveyCodeByTaxonId.put(taxonId, surveyCode);
+            if (!protocol.isBenthosEmpty()) {
+                for (SpeciesProtocol speciesProtocol : protocol.getBenthos()) {
+                    String surveyCode = speciesProtocol.getSpeciesSurveyCode();
+                    if (StringUtils.isNotBlank(surveyCode)) {
+                        Integer taxonId =
+                                speciesProtocol.getSpeciesReferenceTaxonId();
+                        surveyCodeByTaxonId.put(taxonId, surveyCode);
+                    }
                 }
             }
             for (Species species : speciesList) {

Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java
===================================================================
--- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java	2014-05-05 14:59:13 UTC (rev 1752)
+++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java	2014-05-05 15:00:37 UTC (rev 1753)
@@ -4,6 +4,7 @@
  * #%L
  * Tutti :: Persistence API
  * $Id$
+ * $Id$
  * $HeadURL$
  * %%
  * Copyright (C) 2012 Ifremer
@@ -147,6 +148,10 @@
         return Multimaps.index(list, GET_REF_TAX_CODE);
     }
 
+    public static Multimap<String, Species> splitBySurveyCode(Iterable<Species> list) {
+        return Multimaps.index(list, GET_SURVEY_CODE);
+    }
+
     public static final Function<Species, String> GET_TAXON_ID = new Function<Species, String>() {
         @Override
         public String apply(Species input) {
@@ -161,6 +166,13 @@
         }
     };
 
+    public static final Function<Species, String> GET_SURVEY_CODE = new Function<Species, String>() {
+        @Override
+        public String apply(Species input) {
+            return String.valueOf(input.getSurveyCode());
+        }
+    };
+
     public static final Function<TuttiEntity, String> GET_ID = new Function<TuttiEntity, String>() {
         @Override
         public String apply(TuttiEntity input) {
@@ -515,7 +527,7 @@
     public static float roundKiloGram(float value) {
         BigDecimal sumB = new BigDecimal(value);
         float result;
-        if (Math.abs(value - sumB.floatValue())< 0.0001f) {
+        if (Math.abs(value - sumB.floatValue()) < 0.0001f) {
             result = value;
         } else {
             result = sumB.abs(MATH_CONTEXT_4_DIGIT).floatValue();

Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java
===================================================================
--- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java	2014-05-05 14:59:13 UTC (rev 1752)
+++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java	2014-05-05 15:00:37 UTC (rev 1753)
@@ -25,11 +25,7 @@
  */
 
 import fr.ifremer.tutti.service.TuttiCsvUtil;
-import org.apache.commons.lang3.StringUtils;
-import org.nuiton.csv.ValueParser;
 
-import java.text.ParseException;
-
 /**
  * @author kmorin <kmorin@codelutin.com>
  * @since 1.2
@@ -41,13 +37,7 @@
 
         newMandatoryColumn(CarrouselRow.PROPERTY_OPERATION_CODE);
         newMandatoryColumn(CarrouselRow.PROPERTY_RIG_NUMBER);
-        newMandatoryColumn(CarrouselRow.PROPERTY_SPECIES_ID, new ValueParser<String>() {
-
-            @Override
-            public String parse(String string) throws ParseException {
-                return StringUtils.remove(string, '-').trim();
-            }
-        });
+        newMandatoryColumn(CarrouselRow.PROPERTY_SPECIES_ID);
         newMandatoryColumn(CarrouselRow.PROPERTY_SIGN);
         newMandatoryColumn(CarrouselRow.PROPERTY_DIRECTION,
                            TuttiCsvUtil.newEnumByNameParserFormatter(Directions.class));

Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java
===================================================================
--- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java	2014-05-05 14:59:13 UTC (rev 1752)
+++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java	2014-05-05 15:00:37 UTC (rev 1753)
@@ -30,7 +30,6 @@
 import com.google.common.collect.ListMultimap;
 import com.google.common.collect.Lists;
 import com.google.common.collect.Maps;
-import com.google.common.collect.Multimaps;
 import com.google.common.collect.Sets;
 import fr.ifremer.adagio.core.dao.referential.pmfm.ObjectTypeCode2;
 import fr.ifremer.adagio.core.dao.referential.pmfm.PmfmId2;
@@ -147,7 +146,7 @@
         PupitriImportResult result = new PupitriImportResult(trunkFile,
                                                              carrouselFile);
 
-        importPupitriTrunk(result, trunkFile, operation, catchBatch);
+        importPupitriTrunk(result, trunkFile, operation);
         importPupitriCarrousel(result, carrouselFile, operation, catchBatch);
 
         if (result.isFishingOperationFound()) {
@@ -201,9 +200,7 @@
         persistenceService.createAttachment(attachment, f);
     }
 
-    protected void importPupitriTrunk(PupitriImportResult result, File file,
-                                      FishingOperation operation,
-                                      CatchBatch catchBatch) {
+    protected void importPupitriTrunk(PupitriImportResult result, File file, FishingOperation operation) {
 
         if (log.isInfoEnabled()) {
             log.info("Will import pupitri operation [" + operation.toString() +
@@ -272,22 +269,9 @@
 
         // prepare import
 
-        //FIXME tchemit-2013-12-02 Explain what does it do ?
-        // get the map of species by survey code
+        // get the map of species by survey code or reftax code
         ListMultimap<String, Species> speciesBySurveyCode = ArrayListMultimap.create();
-
-        speciesBySurveyCode.putAll(
-                Multimaps.index(dataContext.getReferentSpeciesWithSurveyCode(),
-                                new Function<Species, String>() {
-                                    @Override
-                                    public String apply(Species input) {
-                                        String surveyCode = String.valueOf(input.getSurveyCode());
-                                        int end = Math.min(surveyCode.length(), 7);
-                                        return surveyCode.substring(0, end);
-                                    }
-                                }
-                )
-        );
+        speciesBySurveyCode.putAll(TuttiEntities.splitBySurveyCode(dataContext.getReferentSpeciesWithSurveyCode()));
         speciesBySurveyCode.putAll(TuttiEntities.splitByRefTaxCode(dataContext.getReferentSpecies()));
 
         // import the batches

Copied: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java (from rev 1735, trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java)
===================================================================
--- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java	                        (rev 0)
+++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java	2014-05-05 15:00:37 UTC (rev 1753)
@@ -0,0 +1,137 @@
+package fr.ifremer.tutti.service.pupitri;
+
+/*
+ * #%L
+ * Tutti :: Service
+ * $Id$
+ * $HeadURL$
+ * %%
+ * Copyright (C) 2012 - 2013 Ifremer
+ * %%
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as
+ * published by the Free Software Foundation, either version 3 of the 
+ * License, or (at your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public 
+ * License along with this program.  If not, see
+ * <http://www.gnu.org/licenses/gpl-3.0.html>.
+ * #L%
+ */
+
+import fr.ifremer.tutti.TuttiConfigurationOption;
+import fr.ifremer.tutti.persistence.entities.data.BatchContainer;
+import fr.ifremer.tutti.persistence.entities.data.CatchBatch;
+import fr.ifremer.tutti.persistence.entities.data.FishingOperation;
+import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch;
+import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol;
+import fr.ifremer.tutti.persistence.entities.referential.Species;
+import fr.ifremer.tutti.service.DecoratorService;
+import fr.ifremer.tutti.service.PersistenceService;
+import fr.ifremer.tutti.service.ServiceDbResource;
+import fr.ifremer.tutti.service.TuttiServiceContext;
+import org.junit.Assert;
+import org.junit.Before;
+import org.junit.ClassRule;
+import org.junit.Test;
+import org.nuiton.decorator.Decorator;
+
+import java.io.File;
+import java.io.IOException;
+
+/**
+ * @author tchemit <chemit@codelutin.com>
+ * @since 3.0-rc-2
+ */
+public class PupitriImportServiceAno3898Test {
+
+    @ClassRule
+    public static final ServiceDbResource dbResource =
+            ServiceDbResource.writeDb("dbExport");
+
+    public static final String PROGRAM_ID = "CAM-TEST_ELEVATION";
+
+    public static final String CRUISE_ID = "100003";
+
+    public static final String OPERATION_1_ID = "100112";
+
+    public static final String OPERATION_2_ID = "100113";
+
+    public static final String OPERATION_3_ID = "100115";
+
+    protected PupitriImportExportService service;
+
+    protected PersistenceService persistenceService;
+
+    protected DecoratorService decoratorService;
+
+    protected ServiceDbResource.DataContext dataContext;
+
+    @Before
+    public void setUp() throws Exception {
+
+        TuttiServiceContext serviceContext = dbResource.getServiceContext();
+
+        persistenceService = serviceContext.getService(PersistenceService.class);
+
+        decoratorService = serviceContext.getService(DecoratorService.class);
+
+        dbResource.openDataContext();
+
+        service = serviceContext.getService(PupitriImportExportService.class);
+
+        dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 3,
+                                             OPERATION_2_ID,
+                                             OPERATION_1_ID,
+                                             OPERATION_3_ID);
+    }
+
+    @Test
+    public void importPupitri() throws IOException {
+
+        File trunk = dbResource.copyClassPathResource("pupitri/ano-3898.tnk", "pupitri.tnk");
+        File carroussel = dbResource.copyClassPathResource("pupitri/ano-3898.car", "pupitri.car");
+        File protocol = dbResource.copyClassPathResource("pupitri/ano-3898.tuttiProtocol", "ano-3898.tuttiProtocol");
+        dbResource.getConfig().getApplicationConfig().setOption(TuttiConfigurationOption.DB_PROTOCOL_DIRECTORY.getKey(), protocol.getParentFile().getAbsolutePath());
+        TuttiProtocol protocol1 = persistenceService.getProtocol("ano-3898");
+        persistenceService.setProtocol(protocol1);
+
+        FishingOperation operation = dataContext.operations.get(1);
+        CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation(operation.getId());
+        catchBatch.setFishingOperation(operation);
+
+        BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(operation.getId(), false);
+        Assert.assertEquals(3, rootSpeciesBatch.sizeChildren());
+        int nbNotAdded = service.importPupitri(trunk, carroussel, operation, catchBatch).getNbCarrousselNotImported();
+        Assert.assertEquals(0, nbNotAdded);
+        BatchContainer<SpeciesBatch> rootSpeciesBatchAfter = persistenceService.getRootSpeciesBatch(operation.getId(), false);
+        Assert.assertEquals(31, rootSpeciesBatchAfter.sizeChildren());
+
+        Decorator<Species> speciesDecorator = decoratorService.getDecoratorByType(Species.class);
+
+        for (SpeciesBatch speciesBatch : rootSpeciesBatchAfter.getChildren()) {
+
+            Integer nbChildren = null;
+            // species 17003 (MELAAEG) has two childs (SMALL - BIG)
+            if (17003 == speciesBatch.getSpecies().getIdAsInt()) {
+                nbChildren = 2;
+                // species 37312 (LOLIFOR) has no childs (in puttitri has some DEFAULT AND SMALL)
+            } else if (37312 == speciesBatch.getSpecies().getIdAsInt()) {
+                nbChildren = 0;
+                // species 17005 (MERNMER) has no childs (in puttitri has some DEFAULT AND SMALL)
+            } else if (17005 == speciesBatch.getSpecies().getIdAsInt()) {
+                nbChildren = 0;
+            }
+
+            if (nbChildren != null) {
+                Assert.assertEquals("SpeciesBatch with species " + speciesDecorator.toString(speciesBatch.getSpecies()) + " should have with " + nbChildren + " but had " + speciesBatch.sizeChildBatchs(), nbChildren.intValue(), speciesBatch.sizeChildBatchs());
+            }
+
+        }
+    }
+}

Added: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java
===================================================================
--- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java	                        (rev 0)
+++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java	2014-05-05 15:00:37 UTC (rev 1753)
@@ -0,0 +1,152 @@
+package fr.ifremer.tutti.service.pupitri;
+
+/*
+ * #%L
+ * Tutti :: Service
+ * $Id$
+ * $HeadURL: https://svn.codelutin.com/tutti/branches/3.3.6/tutti-service/src/test/java/f... $
+ * %%
+ * Copyright (C) 2012 - 2013 Ifremer
+ * %%
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as
+ * published by the Free Software Foundation, either version 3 of the 
+ * License, or (at your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public 
+ * License along with this program.  If not, see
+ * <http://www.gnu.org/licenses/gpl-3.0.html>.
+ * #L%
+ */
+
+import com.google.common.collect.Sets;
+import fr.ifremer.tutti.TuttiConfigurationOption;
+import fr.ifremer.tutti.persistence.entities.data.BatchContainer;
+import fr.ifremer.tutti.persistence.entities.data.CatchBatch;
+import fr.ifremer.tutti.persistence.entities.data.FishingOperation;
+import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch;
+import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol;
+import fr.ifremer.tutti.persistence.entities.referential.Species;
+import fr.ifremer.tutti.service.DecoratorService;
+import fr.ifremer.tutti.service.PersistenceService;
+import fr.ifremer.tutti.service.ServiceDbResource;
+import fr.ifremer.tutti.service.TuttiServiceContext;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
+import org.junit.Assert;
+import org.junit.Before;
+import org.junit.ClassRule;
+import org.junit.Test;
+import org.nuiton.decorator.Decorator;
+
+import java.io.File;
+import java.io.IOException;
+import java.util.Set;
+
+/**
+ * @author tchemit <chemit@codelutin.com>
+ * @since 3.0-rc-2
+ */
+public class PupitriImportServiceAno5032Test {
+
+    /** Logger. */
+    private static final Log log = LogFactory.getLog(PupitriImportServiceAno5032Test.class);
+
+    @ClassRule
+    public static final ServiceDbResource dbResource =
+            ServiceDbResource.writeDb("dbExport");
+
+    public static final String PROGRAM_ID = "CAM-TEST_ELEVATION";
+
+    public static final String CRUISE_ID = "100003";
+
+    public static final String OPERATION_1_ID = "100112";
+
+    public static final String OPERATION_2_ID = "100113";
+
+    public static final String OPERATION_3_ID = "100115";
+
+    protected PupitriImportExportService service;
+
+    protected PersistenceService persistenceService;
+
+    protected DecoratorService decoratorService;
+
+    protected ServiceDbResource.DataContext dataContext;
+
+    @Before
+    public void setUp() throws Exception {
+
+        TuttiServiceContext serviceContext = dbResource.getServiceContext();
+
+        persistenceService = serviceContext.getService(PersistenceService.class);
+
+        decoratorService = serviceContext.getService(DecoratorService.class);
+
+        dbResource.openDataContext();
+
+        service = serviceContext.getService(PupitriImportExportService.class);
+
+        dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 3,
+                                             OPERATION_2_ID,
+                                             OPERATION_1_ID,
+                                             OPERATION_3_ID);
+    }
+
+    @Test
+    public void importPupitri() throws IOException {
+
+        File trunk = dbResource.copyClassPathResource("pupitri/ano-5032.tnk", "pupitri.tnk");
+        File carroussel = dbResource.copyClassPathResource("pupitri/ano-5032.car", "pupitri.car");
+        File protocol = dbResource.copyClassPathResource("pupitri/ano-5032.tuttiProtocol", "ano-5032.tuttiProtocol");
+        dbResource.getConfig().getApplicationConfig().setOption(TuttiConfigurationOption.DB_PROTOCOL_DIRECTORY.getKey(), protocol.getParentFile().getAbsolutePath());
+        TuttiProtocol protocol1 = persistenceService.getProtocol("ano-5032");
+        persistenceService.setProtocol(protocol1);
+
+        FishingOperation operation = dataContext.operations.get(1);
+        CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation(operation.getId());
+        catchBatch.setFishingOperation(operation);
+
+        BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(operation.getId(), false);
+        Assert.assertEquals(3, rootSpeciesBatch.sizeChildren());
+        int nbNotAdded = service.importPupitri(trunk, carroussel, operation, catchBatch).getNbCarrousselNotImported();
+        Assert.assertEquals(4, nbNotAdded);
+        BatchContainer<SpeciesBatch> rootSpeciesBatchAfter = persistenceService.getRootSpeciesBatch(operation.getId(), false);
+        Assert.assertEquals(4, rootSpeciesBatchAfter.sizeChildren());
+
+        Set<Integer> unexpectedSpecies = Sets.newHashSet(
+        );
+        Set<Integer> expectedSpecies = Sets.newHashSet(
+                17005, // MERNMER
+                17186, // ACATPAL
+                16328, // ACAPPEL
+                20788  // ASRNATL
+        );
+
+        Decorator<Species> speciesDecorator = decoratorService.getDecoratorByType(Species.class);
+
+        for (SpeciesBatch speciesBatch : rootSpeciesBatchAfter.getChildren()) {
+
+            Species species = speciesBatch.getSpecies();
+            Integer speciesId = species.getIdAsInt();
+            boolean remove = expectedSpecies.remove(speciesId);
+            if (log.isInfoEnabled()) {
+                log.info("Species : " + speciesId + " : " + speciesDecorator.toString(species));
+            }
+            if (!remove) {
+                unexpectedSpecies.add(speciesId);
+                if (log.isWarnEnabled()) {
+                    log.warn("Unexpected Species " + speciesId);
+                }
+            }
+        }
+
+        Assert.assertTrue("Expected species not found: " + expectedSpecies, expectedSpecies.isEmpty());
+        Assert.assertTrue("Unexpected species found: " + unexpectedSpecies, unexpectedSpecies.isEmpty());
+    }
+}


Property changes on: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java
___________________________________________________________________
Added: svn:keywords
   + Author Date Id Revision
Added: svn:eol-style
   + native

Deleted: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java
===================================================================
--- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java	2014-05-05 14:59:13 UTC (rev 1752)
+++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java	2014-05-05 15:00:37 UTC (rev 1753)
@@ -1,138 +0,0 @@
-package fr.ifremer.tutti.service.pupitri;
-
-/*
- * #%L
- * Tutti :: Service
- * $Id$
- * $HeadURL$
- * %%
- * Copyright (C) 2012 - 2013 Ifremer
- * %%
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as
- * published by the Free Software Foundation, either version 3 of the 
- * License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public 
- * License along with this program.  If not, see
- * <http://www.gnu.org/licenses/gpl-3.0.html>.
- * #L%
- */
-
-import fr.ifremer.tutti.TuttiConfigurationOption;
-import fr.ifremer.tutti.persistence.entities.data.BatchContainer;
-import fr.ifremer.tutti.persistence.entities.data.CatchBatch;
-import fr.ifremer.tutti.persistence.entities.data.FishingOperation;
-import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch;
-import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol;
-import fr.ifremer.tutti.persistence.entities.referential.Species;
-import fr.ifremer.tutti.service.DecoratorService;
-import fr.ifremer.tutti.service.PersistenceService;
-import fr.ifremer.tutti.service.ServiceDbResource;
-import fr.ifremer.tutti.service.TuttiServiceContext;
-import org.junit.Assert;
-import org.junit.Before;
-import org.junit.ClassRule;
-import org.junit.Test;
-import org.nuiton.decorator.Decorator;
-
-import java.io.File;
-import java.io.IOException;
-
-/**
- * @author tchemit <chemit@codelutin.com>
- * @since 3.0-rc-2
- */
-public class PupitriImportServiceTest {
-
-    @ClassRule
-    public static final ServiceDbResource dbResource =
-            ServiceDbResource.writeDb("dbExport");
-
-    public static final String PROGRAM_ID = "CAM-TEST_ELEVATION";
-
-    public static final String CRUISE_ID = "100003";
-
-    public static final String OPERATION_1_ID = "100112";
-
-    public static final String OPERATION_2_ID = "100113";
-
-    public static final String OPERATION_3_ID = "100115";
-
-    protected PupitriImportExportService service;
-
-    protected PersistenceService persistenceService;
-
-    protected DecoratorService decoratorService;
-
-    protected ServiceDbResource.DataContext dataContext;
-
-    @Before
-    public void setUp() throws Exception {
-
-        TuttiServiceContext serviceContext = dbResource.getServiceContext();
-
-        persistenceService = serviceContext.getService(PersistenceService.class);
-
-        decoratorService = serviceContext.getService(DecoratorService.class);
-
-        dbResource.openDataContext();
-
-        service = serviceContext.getService(PupitriImportExportService.class);
-
-        dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 3,
-                                             OPERATION_2_ID,
-                                             OPERATION_1_ID,
-                                             OPERATION_3_ID);
-    }
-
-    @Test
-    public void importPupitriANO3898() throws IOException {
-
-        File trunk = dbResource.copyClassPathResource("pupitri/ano-3898.tnk", "pupitri.tnk");
-        File carroussel = dbResource.copyClassPathResource("pupitri/ano-3898.car", "pupitri.car");
-        File protocol = dbResource.copyClassPathResource("pupitri/ano-3898.tuttiProtocol", "ano-3898.tuttiProtocol");
-        dbResource.getConfig().getApplicationConfig().setOption(TuttiConfigurationOption.DB_PROTOCOL_DIRECTORY.getKey(), protocol.getParentFile().getAbsolutePath());
-        TuttiProtocol protocol1 = persistenceService.getProtocol("ano-3898");
-        persistenceService.setProtocol(protocol1);
-
-        FishingOperation operation = dataContext.operations.get(1);
-        CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation(operation.getId());
-        catchBatch.setFishingOperation(operation);
-
-        BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(operation.getId(), false);
-        Assert.assertEquals(3, rootSpeciesBatch.sizeChildren());
-        int nbNotAdded = service.importPupitri(trunk, carroussel, operation, catchBatch).getNbCarrousselNotImported();
-        Assert.assertEquals(0, nbNotAdded);
-        BatchContainer<SpeciesBatch> rootSpeciesBatchAfter = persistenceService.getRootSpeciesBatch(operation.getId(), false);
-        Assert.assertEquals(31, rootSpeciesBatchAfter.sizeChildren());
-
-        Decorator<Species> speciesDecorator = decoratorService.getDecoratorByType(Species.class);
-
-//        int index = 0;
-        for (SpeciesBatch speciesBatch : rootSpeciesBatchAfter.getChildren()) {
-
-            Integer nbChildren = null;
-            // species 17003 (MELAAEG) has two childs (SMALL - BIG)
-            if (17003 == speciesBatch.getSpecies().getIdAsInt()) {
-                nbChildren = 2;
-                // species 37312 (LOLIFOR) has no childs (in puttitri has some DEFAULT AND SMALL)
-            } else if (37312 == speciesBatch.getSpecies().getIdAsInt()) {
-                nbChildren = 0;
-                // species 17005 (MERNMER) has no childs (in puttitri has some DEFAULT AND SMALL)
-            }else if (17005== speciesBatch.getSpecies().getIdAsInt()) {
-                nbChildren = 0;
-            }
-
-            if (nbChildren != null) {
-                Assert.assertEquals("SpeciesBatch with species " + speciesDecorator.toString(speciesBatch.getSpecies()) + " should have with " + nbChildren + " but had " + speciesBatch.sizeChildBatchs(), nbChildren.intValue(), speciesBatch.sizeChildBatchs());
-            }
-
-        }
-    }
-}

Modified: trunk/tutti-service/src/test/resources/pupitri/ano-3898.car
===================================================================
--- trunk/tutti-service/src/test/resources/pupitri/ano-3898.car	2014-05-05 14:59:13 UTC (rev 1752)
+++ trunk/tutti-service/src/test/resources/pupitri/ano-3898.car	2014-05-05 15:00:37 UTC (rev 1753)
@@ -1,381 +1,381 @@
-$TSMES,27/11/13,09:12:04.612,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.6,
-$TSMES,27/11/13,09:13:21.994,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0018.9,
-$TSMES,27/11/13,09:15:12.588,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0021.4,
-$TSMES,27/11/13,09:15:58.396,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0017.9,
-$TSMES,27/11/13,09:17:11.714,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0017.2,
-$TSMES,27/11/13,09:17:40.272,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0021.1,
-$TSMES,27/11/13,09:18:48.818,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0018.0,
-$TSMES,27/11/13,09:19:33.335,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0016.6,
-$TSMES,27/11/13,09:21:16.442,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.8,
-$TSMES,27/11/13,09:21:40.776,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0022.8,
-$TSMES,27/11/13,09:22:45.945,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0016.1,
-$TSMES,27/11/13,09:26:51.656,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0019.1,
-$TSMES,27/11/13,09:27:53.133,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0016.5,
-$TSMES,27/11/13,09:28:17.445,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0018.4,
-$TSMES,27/11/13,09:31:22.362,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0014.6,
-$TSMES,27/11/13,09:31:45.650,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0018.4,
-$TSMES,27/11/13,09:32:05.512,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0023.0,
-$TSMES,27/11/13,09:33:00.869,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0014.2,
-$TSMES,27/11/13,09:33:24.472,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0012.8,
-$TSMES,27/11/13,09:34:25.343,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.8,
-$TSMES,27/11/13,09:34:44.541,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0021.0,
-$TSMES,27/11/13,09:36:02.174,BLCAR, 0,A,1,001,NEPH-NOR,0,VAT,0006.3,
-$TSMES,27/11/13,09:36:30.632,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0024.1,
-$TSMES,27/11/13,09:37:25.749,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0017.5,
-$TSMES,27/11/13,09:37:47.056,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0018.3,
-$TSMES,27/11/13,09:38:44.513,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0018.5,
-$TSMES,27/11/13,09:40:34.621,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0015.8,
-$TSMES,27/11/13,09:41:28.855,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0011.3,
-$TSMES,27/11/13,09:42:39.349,BLCAR, 0,A,1,002,SCYL-CAN,0,VAT,0016.7,
-$TSMES,27/11/13,09:43:01.405,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0020.2,
-$TSMES,27/11/13,09:43:21.779,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0018.7,
-$TSMES,27/11/13,09:44:16.028,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0025.7,
-$TSMES,27/11/13,09:44:39.643,BLCAR, 0,A,1,002,MERL-MCC,0,VAT,0017.6,
-$TSMES,27/11/13,09:45:41.310,BLCAR, 0,A,1,002,SCYL-CAN,0,VAT,0015.9,
-$TSMES,27/11/13,09:46:04.181,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0018.0,
-$TSMES,27/11/13,09:47:00.822,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0018.1,
-$TSMES,27/11/13,09:47:25.806,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0018.0,
-$TSMES,27/11/13,09:48:25.059,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0013.1,
-$TSMES,27/11/13,09:48:47.779,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0016.4,
-$TSMES,27/11/13,09:50:25.036,BLCAR,-1,A,1,002,CLUP-HAR,0,VAT,-001.8,
-$TSMES,27/11/13,09:51:02.085,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0016.5,
-$TSMES,27/11/13,09:52:08.332,BLCAR, 0,A,1,002,SCYL-CAN,0,VAT,0016.2,
-$TSMES,27/11/13,09:52:34.644,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0020.6,
-$TSMES,27/11/13,09:52:57.540,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0016.1,
-$TSMES,27/11/13,09:53:31.676,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0018.3,
-$TSMES,27/11/13,09:54:07.781,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0021.0,
-$TSMES,27/11/13,09:55:10.374,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0018.4,
-$TSMES,27/11/13,09:55:35.859,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0018.1,
-$TSMES,27/11/13,09:56:02.545,BLCAR, 0,A,1,002,SCYL-CAN,0,VAT,0014.2,
-$TSMES,27/11/13,09:57:06.900,BLCAR, 0,A,1,002,EUTR-GUR,0,VAT,0013.5,
-$TSMES,27/11/13,09:57:28.821,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0018.3,
-$TSMES,27/11/13,09:58:35.607,BLCAR, 0,A,1,001,MERL-MNG,0,VAT,0009.9,
-$TSMES,27/11/13,09:59:17.462,BLCAR, 0,A,1,001,EUTR-GUR,0,VAT,0006.9,
-$TSMES,27/11/13,10:00:18.404,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0023.0,
-$TSMES,27/11/13,10:00:45.111,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0014.8,
-$TSMES,27/11/13,10:01:59.945,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0019.3,
-$TSMES,27/11/13,10:02:23.121,BLCAR, 0,A,1,002,NEPH-NOR,0,VAT,0010.2,
-$TSMES,27/11/13,10:03:37.632,BLCAR, 0,A,1,002,SCYL-CAN,0,VAT,0014.0,
-$TSMES,27/11/13,10:04:06.529,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.1,
-$TSMES,27/11/13,10:05:06.144,BLCAR, 0,A,1,002,SCYL-CAN,0,VAT,0014.0,
-$TSMES,27/11/13,10:05:36.831,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0020.3,
-$TSMES,27/11/13,10:06:02.527,BLCAR, 0,A,1,002,SCYL-CAN,0,VAT,0012.3,
-$TSMES,27/11/13,10:07:12.015,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0023.7,
-$TSMES,27/11/13,10:07:44.295,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0018.2,
-$TSMES,27/11/13,10:08:22.400,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0017.6,
-$TSMES,27/11/13,10:09:24.404,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0022.5,
-$TSMES,27/11/13,10:09:45.542,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0017.7,
-$TSMES,27/11/13,10:10:07.635,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0021.8,
-$TSMES,27/11/13,10:10:38.750,BLCAR, 0,A,1,002,SCYL-CAN,0,VAT,0011.2,
-$TSMES,27/11/13,10:11:05.784,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.9,
-$TSMES,27/11/13,10:11:34.634,BLCAR, 0,A,1,002,CONG-CON,0,VAT,0001.0,
-$TSMES,27/11/13,10:12:40.011,BLCAR,-1,A,1,002,RAJA-CLA,0,VAT,-000.1,
-$TSMES,27/11/13,10:13:08.077,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0014.8,
-$TSMES,27/11/13,10:13:35.173,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0012.2,
-$TSMES,27/11/13,10:13:56.456,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0020.3,
-$TSMES,27/11/13,10:14:43.589,BLCAR, 0,A,1,001,HIPP-PLA,0,VAT,0002.9,
-$TSMES,27/11/13,10:15:33.096,BLCAR, 0,A,1,001,MELA-AEG,P,VAT,0001.4,
-$TSMES,27/11/13,10:15:59.750,BLCAR, 0,A,1,002,MELA-AEG,G,VAT,0007.8,
-$TSMES,27/11/13,10:16:28.073,BLCAR, 0,A,1,001,GADU-MOR,0,VAT,0000.1,
-$TSMES,27/11/13,10:17:04.293,BLCAR, 0,A,1,001,MERL-MNG,0,VAT,0007.1,
-$TSMES,27/11/13,10:17:35.174,BLCAR, 0,A,1,001,TRIS-MIN,0,VAT,0006.0,
-$TSMES,27/11/13,10:18:09.419,BLCAR, 0,A,1,001,MERL-MNG,P,VAT,0007.4,
-$TSMES,27/11/13,10:18:41.202,BLCAR, 0,A,1,001,MERL-MNG,0,VAT,0000.4,
-$TSMES,27/11/13,10:19:05.719,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0007.7,
-$TSMES,27/11/13,10:19:50.270,BLCAR, 0,A,1,001,HIPP-PLA,0,VAT,0002.7,
-$TSMES,27/11/13,10:20:20.642,BLCAR, 0,A,1,002,MICR-POU,0,VAT,0010.7,
-$TSMES,27/11/13,10:20:48.724,BLCAR, 0,A,1,001,LOLI-FOR,0,VAT,0002.2,
-$TSMES,27/11/13,10:21:10.768,BLCAR, 0,A,1,001,EUTR-GUR,0,VAT,0004.7,
-$TSMES,27/11/13,10:21:41.022,BLCAR, 0,A,1,001,NEPH-NOR,0,VAT,0006.3,
-$TSMES,27/11/13,10:22:42.411,BLCAR, 0,A,1,001,ARGE-SPH,0,VAT,0000.1,
-$TSMES,27/11/13,10:23:25.537,BLCAR, 0,A,1,001,TRAC-TRU,0,VAT,0000.1,
-$TSMES,27/11/13,10:24:06.077,BLCAR, 0,A,1,001,SCOM-SCO,0,VAT,0000.4,
-$TSMES,27/11/13,10:24:34.127,BLCAR, 0,A,1,001,MAUR-MUE,0,VAT,0000.1,
-$TSMES,27/11/13,10:25:23.660,BLCAR, 0,A,1,001,LEPI-WHI,0,VAT,0003.1,
-$TSMES,27/11/13,10:25:47.598,BLCAR, 0,A,1,002,SCYL-CAN,0,VAT,0005.3,
-$TSMES,27/11/13,10:26:12.602,BLCAR, 0,A,1,002,LOPH-PIS,0,VAT,0012.0,
-$TSMES,27/11/13,10:26:33.530,BLCAR, 0,A,1,003,ELED-CIR,0,VAT,0001.4,
-$TSMES,27/11/13,10:27:34.508,BLCAR, 0,A,1,003,ROSS-MAC,0,VAT,0000.1,
-$TSMES,27/11/13,10:28:17.554,BLCAR, 0,A,1,001,ENCH-CIM,0,VAT,0000.8,
-$TSMES,27/11/13,10:28:57.935,BLCAR, 0,A,1,001,LIMA-LIM,0,VAT,0000.2,
-$TSMES,27/11/13,10:29:42.251,BLCAR, 0,A,1,001,CALL-MAC,0,VAT,0000.2,
-$TSMES,27/11/13,10:30:09.536,BLCAR, 0,A,1,001,CALL-LYR,0,VAT,0000.8,
-$TSMES,27/11/13,10:30:59.437,BLCAR, 0,A,1,001,MICR-VAR,0,VAT,0000.2,
-$TSMES,27/11/13,10:31:32.624,BLCAR, 0,A,1,001,SEPI-OLZ,0,VAT,0000.2,
-$TSMES,27/11/13,10:31:59.713,BLCAR, 0,A,1,003,LOLI-FOR,P,VAT,0000.1,
-$TSMES,27/11/13,10:32:34.851,BLCAR, 0,A,1,003,TODA-EBL,0,VAT,0000.2,
-$TSMES,27/11/13,10:33:02.175,BLCAR, 0,A,1,002,MERL-MCC,0,VAT,0013.8,
-$TSMES,27/11/13,10:35:38.377,BLCAR, 0,A,1,001,GLYP-CYN,0,VAT,0000.3,
-$TSMES,27/11/13,12:04:35.575,BLCAR, 0,R0482,1,001,MERL-MNG,0,VAT,0020.0,
-$TSMES,27/11/13,12:06:30.634,BLCAR, 0,R0482,1,002,MERL-MNG,0,VAT,0018.9,
-$TSMES,27/11/13,12:08:42.036,BLCAR, 0,R0482,1,002,MERL-MNG,0,VAT,0018.3,
-$TSMES,27/11/13,12:09:02.786,BLCAR, 0,R0482,1,002,MERL-MNG,0,VAT,0019.2,
-$TSMES,27/11/13,12:12:30.199,BLCAR, 0,R0482,1,002,MELA-AEG,0,VAT,0021.9,
-$TSMES,27/11/13,12:13:14.543,BLCAR, 0,R0482,1,002,MERL-MNG,0,VAT,0000.0,
-$TSMES,27/11/13,12:13:35.465,BLCAR,-1,R0482,1,002,MELA-AEG,0,VAT,-001.4,
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+$TSMES,27/11/13,15:25:01.382,BLCAR, 0,R0483,1,002,MELAAEG,0,VAT,0038.5,
+$TSMES,27/11/13,15:25:33.850,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0038.7,
+$TSMES,27/11/13,15:26:40.348,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0038.3,
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+$TSMES,27/11/13,15:29:15.679,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0038.0,
+$TSMES,27/11/13,15:29:45.429,BLCAR, 0,R0483,1,002,CLUPHAR,0,VAT,0041.7,
+$TSMES,27/11/13,15:31:04.254,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0038.1,
+$TSMES,27/11/13,15:32:48.975,BLCAR, 0,R0483,1,002,TRISESM,0,VAT,0036.8,
+$TSMES,27/11/13,15:33:13.585,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0040.6,
+$TSMES,27/11/13,15:33:38.474,BLCAR, 0,R0483,1,002,CLUPHAR,0,VAT,0040.9,
+$TSMES,27/11/13,15:34:25.118,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0036.7,
+$TSMES,27/11/13,15:35:39.285,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0039.7,
+$TSMES,27/11/13,15:36:06.481,BLCAR, 0,R0483,1,002,MELAAEG,0,VAT,0037.3,
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+$TSMES,27/11/13,15:38:37.423,BLCAR, 0,R0483,1,002,MELAAEG,G,VAT,0039.6,
+$TSMES,27/11/13,15:39:06.734,BLCAR, 0,R0483,1,002,MELAAEG,0,VAT,0037.4,
+$TSMES,27/11/13,15:39:30.356,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0038.2,
+$TSMES,27/11/13,15:42:01.949,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0038.5,
+$TSMES,27/11/13,15:42:32.622,BLCAR, 0,R0483,1,002,CLUPHAR,0,VAT,0040.3,
+$TSMES,27/11/13,15:43:53.560,BLCAR, 0,R0483,1,002,TRISESM,0,VAT,0034.4,
+$TSMES,27/11/13,15:44:53.834,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0039.7,
+$TSMES,27/11/13,15:45:20.674,BLCAR, 0,R0483,1,002,MELAAEG,0,VAT,0037.5,
+$TSMES,27/11/13,15:45:42.151,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0039.8,
+$TSMES,27/11/13,15:46:36.631,BLCAR, 0,R0483,1,002,CLUPHAR,0,VAT,0038.5,
+$TSMES,27/11/13,15:47:46.081,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0041.1,
+$TSMES,27/11/13,15:48:09.796,BLCAR, 0,R0483,1,002,CLUPHAR,0,VAT,0036.9,
+$TSMES,27/11/13,15:49:07.011,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0040.1,
+$TSMES,27/11/13,15:50:20.735,BLCAR, 0,R0483,1,001,EUTRGUR,0,VAT,0009.3,
+$TSMES,27/11/13,15:50:46.736,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0037.4,
+$TSMES,27/11/13,15:51:54.878,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0041.3,
+$TSMES,27/11/13,15:52:30.751,BLCAR, 0,R0483,1,002,TRISESM,0,VAT,0035.9,
+$TSMES,27/11/13,15:53:51.579,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0039.5,
+$TSMES,27/11/13,15:54:27.228,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0038.8,
+$TSMES,27/11/13,15:55:52.975,BLCAR, 0,R0483,1,002,CLUPHAR,0,VAT,0041.6,
+$TSMES,27/11/13,15:56:16.404,BLCAR, 0,R0483,1,001,EUTRGUR,0,VAT,0008.4,
+$TSMES,27/11/13,15:57:44.638,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0039.2,
+$TSMES,27/11/13,15:58:03.736,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0038.4,
+$TSMES,27/11/13,15:59:20.147,BLCAR, 0,R0483,1,002,MELAAEG,0,VAT,0037.1,
+$TSMES,27/11/13,15:59:42.581,BLCAR, 0,R0483,1,002,CLUPHAR,0,VAT,0038.5,
+$TSMES,27/11/13,16:00:05.526,BLCAR, 0,R0483,1,002,MELAAEG,0,VAT,0038.5,
+$TSMES,27/11/13,16:01:05.295,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0039.2,
+$TSMES,27/11/13,16:01:38.199,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0038.2,
+$TSMES,27/11/13,16:02:43.037,BLCAR, 0,R0483,1,002,MELAAEG,0,VAT,0037.8,
+$TSMES,27/11/13,16:03:48.080,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0038.5,
+$TSMES,27/11/13,16:04:19.938,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0040.8,
+$TSMES,27/11/13,16:04:44.532,BLCAR, 0,R0483,1,002,CLUPHAR,0,VAT,0039.0,
+$TSMES,27/11/13,16:05:05.076,BLCAR, 0,R0483,1,002,TRISESM,0,VAT,0041.1,
+$TSMES,27/11/13,16:05:28.231,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0040.5,
+$TSMES,27/11/13,16:05:46.924,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0038.7,
+$TSMES,27/11/13,16:06:11.887,BLCAR, 0,R0483,1,002,MELAAEG,G,VAT,0037.8,
+$TSMES,27/11/13,16:06:29.181,BLCAR, 0,R0483,1,002,MELAAEG,0,VAT,0038.5,
+$TSMES,27/11/13,16:06:52.290,BLCAR, 0,R0483,1,002,SCYLCAN,0,VAT,0032.9,
+$TSMES,27/11/13,16:07:14.568,BLCAR, 0,R0483,1,002,CLUPHAR,0,VAT,0039.6,
+$TSMES,27/11/13,16:07:31.751,BLCAR, 0,R0483,1,002,CLUPHAR,0,VAT,0039.8,
+$TSMES,27/11/13,16:08:04.245,BLCAR, 0,R0483,1,002,LOPHPIS,0,VAT,0030.9,
+$TSMES,27/11/13,16:08:33.424,BLCAR, 0,R0483,1,002,CONGCON,0,VAT,0023.2,
+$TSMES,27/11/13,16:08:57.169,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0039.8,
+$TSMES,27/11/13,16:09:30.997,BLCAR, 0,R0483,1,002,LEPIWHI,0,VAT,0024.9,
+$TSMES,27/11/13,16:10:05.148,BLCAR, 0,R0483,1,002,SCOMSCO,0,VAT,0020.7,
+$TSMES,27/11/13,16:10:39.324,BLCAR, 0,R0483,1,001,MICRKIT,0,VAT,0000.8,
+$TSMES,27/11/13,16:11:07.157,BLCAR, 0,R0483,1,002,MERLMCC,0,VAT,0031.9,
+$TSMES,27/11/13,16:11:35.229,BLCAR, 0,R0483,1,002,MELAAEG,0,VAT,0037.3,
+$TSMES,27/11/13,16:12:26.292,BLCAR, 0,R0483,1,002,TRISESM,0,VAT,0031.0,
+$TSMES,27/11/13,16:13:21.182,BLCAR, 0,R0483,1,001,GLYPCYN,0,VAT,0001.0,
+$TSMES,27/11/13,16:13:47.758,BLCAR, 0,R0483,1,002,CLUPHAR,0,VAT,0027.2,
+$TSMES,27/11/13,16:14:10.075,BLCAR, 0,R0483,1,002,LOLIFOR,0,VAT,0022.6,
+$TSMES,27/11/13,16:14:35.253,BLCAR, 0,R0483,1,001,EUTRGUR,0,VAT,0005.6,
+$TSMES,27/11/13,16:15:22.151,BLCAR, 0,R0483,1,001,MICRPOU,0,VAT,0001.1,
+$TSMES,27/11/13,16:16:14.956,BLCAR, 0,R0483,1,001,HIPPPLA,0,VAT,0000.2,
+$TSMES,27/11/13,16:16:52.305,BLCAR, 0,R0483,1,001,TRACTRU,0,VAT,0000.4,
+$TSMES,27/11/13,16:17:13.456,BLCAR, 0,R0483,1,001,SPRASPR,0,VAT,0000.6,
+$TSMES,27/11/13,16:17:37.593,BLCAR, 0,R0483,1,001,ARGESPH,0,VAT,0000.8,
+$TSMES,27/11/13,16:18:08.358,BLCAR, 0,R0483,1,001,SEPIOLZ,0,VAT,0000.1,
+$TSMES,27/11/13,16:18:44.478,BLCAR, 0,R0483,1,001,LOLIFOR,P,VAT,0000.3,
+$TSMES,27/11/13,16:19:19.836,BLCAR, 0,R0483,1,002,MERLMNG,0,VAT,0038.1,
+$TSMES,27/11/13,16:19:44.016,BLCAR, 0,R0483,1,002,MELAAEG,0,VAT,0043.0,
+$TSMES,27/11/13,16:20:12.751,BLCAR, 0,R0483,1,001,TODAEBL,0,VAT,0000.6,
+$TSMES,27/11/13,16:21:02.469,BLCAR, 0,R0483,1,001,CALLLYR,0,VAT,0000.2,
+$TSMES,27/11/13,16:21:25.949,BLCAR, 0,R0483,1,001,CALLMAC,0,VAT,0000.2,
+$TSMES,27/11/13,16:21:55.232,BLCAR, 0,R0483,1,002,MERLMNG,P,VAT,0028.0,
+$TSMES,27/11/13,16:22:21.965,BLCAR, 0,R0483,1,001,ELEDCIR,0,VAT,0001.4,
+$TSMES,27/11/13,16:22:51.628,BLCAR, 0,R0483,1,001,TRISMIN,0,VAT,0003.6,
+$TSMES,27/11/13,18:49:59.855,BLCAR, 0,R0484,1,002,MERLMNG,0,VAT,0019.8,
+$TSMES,27/11/13,18:50:19.448,BLCAR, 0,R0484,1,002,MERLMNG,0,VAT,0016.8,
+$TSMES,27/11/13,18:55:48.008,BLCAR, 0,R0484,1,001,EUTRGUR,0,VAT,0007.6,
+$TSMES,27/11/13,18:56:34.603,BLCAR, 0,R0484,1,002,EUTRGUR,0,VAT,0011.7,
+$TSMES,27/11/13,18:58:57.070,BLCAR, 0,R0484,1,001,EUTRGUR,0,VAT,0007.6,
+$TSMES,27/11/13,18:59:34.603,BLCAR, 0,R0484,1,002,MELANGE,0,VAT,0016.4,
+$TSMES,27/11/13,19:00:53.047,BLCAR, 0,R0484,1,002,MERLMNG,0,VAT,0020.9,
+$TSMES,27/11/13,19:01:17.629,BLCAR, 0,R0484,1,002,MERLMNG,0,VAT,0020.0,
+$TSMES,27/11/13,19:02:01.189,BLCAR, 0,R0484,1,002,EUTRGUR,0,VAT,0008.5,
+$TSMES,27/11/13,19:02:23.329,BLCAR, 0,R0484,1,002,MELANGE,0,VAT,0016.1,
+$TSMES,27/11/13,19:04:11.551,BLCAR, 0,R0484,1,002,MERLMNG,p,VAT,0020.9,
+$TSMES,27/11/13,19:04:54.312,BLCAR, 0,R0484,1,002,MERLMNG,0,VAT,0017.9,
+$TSMES,27/11/13,19:05:31.029,BLCAR, 0,R0484,1,002,MELANGE,0,VAT,0016.0,
+$TSMES,27/11/13,19:06:32.679,BLCAR, 0,R0484,1,002,EUTRGUR,0,VAT,0011.3,
+$TSMES,27/11/13,19:06:59.485,BLCAR, 0,R0484,1,001,EUTRGUR,0,VAT,0007.3,
+$TSMES,27/11/13,19:10:50.599,BLCAR, 0,R0484,1,002,MERLMNG,0,VAT,0019.0,
+$TSMES,27/11/13,19:12:32.300,BLCAR, 0,R0484,1,001,EUTRGUR,0,VAT,0008.4,
+$TSMES,27/11/13,19:13:11.765,BLCAR, 0,R0484,1,002,MERLMNG,0,VAT,0020.6,
+$TSMES,27/11/13,19:13:42.494,BLCAR, 0,R0484,1,002,MERLMNG,p,VAT,0018.7,
+$TSMES,27/11/13,19:14:34.508,BLCAR, 0,R0484,1,002,MELANGE,0,VAT,0015.0,
+$TSMES,27/11/13,19:18:06.846,BLCAR, 0,R0484,1,002,MERLMNG,0,VAT,0011.6,
+$TSMES,27/11/13,19:19:06.548,BLCAR, 0,R0484,1,001,EUTRGUR,0,VAT,0008.6,
+$TSMES,27/11/13,19:19:29.730,BLCAR, 0,R0484,1,002,EUTRGUR,0,VAT,0012.4,
+$TSMES,27/11/13,19:19:53.075,BLCAR, 0,R0484,1,002,MELAAEG,0,VAT,0005.1,
+$TSMES,27/11/13,19:20:15.873,BLCAR, 0,R0484,1,002,EUTRGUR,0,VAT,0013.7,
+$TSMES,27/11/13,19:20:42.508,BLCAR, 0,R0484,1,001,HIPPPLA,0,VAT,0000.5,
+$TSMES,27/11/13,19:21:14.304,BLCAR, 0,R0484,1,001,SCYLCAN,0,VAT,0000.9,
+$TSMES,27/11/13,19:22:30.586,BLCAR, 0,R0484,1,002,MERLMNG,0,VAT,0021.2,
+$TSMES,27/11/13,19:22:50.150,BLCAR, 0,R0484,1,002,MERLMNG,0,VAT,0009.2,
+$TSMES,27/11/13,19:23:12.550,BLCAR, 0,R0484,1,002,CLUPHAR,0,VAT,0001.6,
+$TSMES,27/11/13,19:23:38.609,BLCAR, 0,R0484,1,002,MELANGE,0,VAT,0005.1,
+$TSMES,27/11/13,19:24:07.337,BLCAR, 0,R0484,1,001,MERLMCC,0,VAT,0000.5,
+$TSMES,27/11/13,19:24:36.607,BLCAR, 0,R0484,1,001,HIPPPLA,0,VAT,0001.7,
+$TSMES,27/11/13,19:25:36.793,BLCAR, 0,R0484,1,001,MICRPOU,0,VAT,0000.7,
+$TSMES,27/11/13,19:26:04.841,BLCAR, 0,R0484,1,002,MERLMNG,p,VAT,0005.8,
+$TSMES,27/11/13,19:26:26.140,BLCAR, 0,R0484,1,001,SCOMSCO,0,VAT,0000.0,
+$TSMES,27/11/13,19:26:47.870,BLCAR, 0,R0484,1,001,GLYPCYN,0,VAT,0000.2,
+$TSMES,27/11/13,19:27:09.223,BLCAR, 0,R0484,1,001,TRISMIN,0,VAT,0000.6,
+$TSMES,27/11/13,19:27:29.741,BLCAR, 0,R0484,1,001,ARGESPH,0,VAT,0000.2,
+$TSMES,27/11/13,19:27:54.743,BLCAR, 0,R0484,1,001,TRACTRU,0,VAT,0000.2,
+$TSMES,27/11/13,19:28:15.821,BLCAR, 0,R0484,1,002,NEPHNOR,0,VAT,0004.3,
+$TSMES,27/11/13,19:28:40.581,BLCAR, 0,R0484,1,001,SEPIOLZ,0,VAT,0000.1,
+$TSMES,27/11/13,19:29:00.043,BLCAR, 0,R0484,1,001,LOLIFOR,0,VAT,0000.1,
+$TSMES,27/11/13,19:29:34.076,BLCAR, 0,R0484,1,001,ROSSMAC,0,VAT,0000.1,
+$TSMES,27/11/13,19:30:00.792,BLCAR, 0,R0484,1,001,ELEDCIR,0,VAT,0000.6,
+$TSMES,27/11/13,19:30:27.478,BLCAR, 0,R0484,1,001,TODAEBL,0,VAT,0000.1,

Copied: trunk/tutti-service/src/test/resources/pupitri/ano-5032.car (from rev 1747, branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.car)
===================================================================
--- trunk/tutti-service/src/test/resources/pupitri/ano-5032.car	                        (rev 0)
+++ trunk/tutti-service/src/test/resources/pupitri/ano-5032.car	2014-05-05 15:00:37 UTC (rev 1753)
@@ -0,0 +1,8 @@
+$TSMES,27/11/13,09:12:04.612,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.6,
+$TSMES,27/11/13,09:13:21.994,BLCAR, 0,A,1,002,MERLMNG,0,VAT,0018.9,
+$TSMES,27/11/13,09:15:12.588,BLCAR, 0,A,1,002,ACAN-PEL,0,VAT,0021.4,
+$TSMES,27/11/13,09:15:58.396,BLCAR, 0,A,1,002,ACANPEL,0,VAT,0017.9,
+$TSMES,27/11/13,09:17:11.714,BLCAR, 0,A,1,002,ACANPAL,0,VAT,0017.2,
+$TSMES,27/11/13,09:17:40.272,BLCAR, 0,A,1,002,ACAN-PAL,0,VAT,0021.1,
+$TSMES,27/11/13,09:18:48.818,BLCAR, 0,A,1,002,ASRNATL,0,VAT,0018.0,
+$TSMES,27/11/13,09:19:33.335,BLCAR, 0,A,1,002,ASRN-ATL,0,VAT,0016.6,
\ No newline at end of file

Copied: trunk/tutti-service/src/test/resources/pupitri/ano-5032.tnk (from rev 1747, branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.tnk)
===================================================================
--- trunk/tutti-service/src/test/resources/pupitri/ano-5032.tnk	                        (rev 0)
+++ trunk/tutti-service/src/test/resources/pupitri/ano-5032.tnk	2014-05-05 15:00:37 UTC (rev 1753)
@@ -0,0 +1,149 @@
+$TSMES,27/11/13,09:08:45.130,BLTNK, 0,A,1,VAT,0045.4,
+$TSMES,27/11/13,09:10:10.522,BLTNK, 0,A,1,VAT,0045.0,
+$TSMES,27/11/13,09:12:14.730,BLTNK, 0,A,1,VAT,0043.9,
+$TSMES,27/11/13,09:14:06.033,BLTNK, 0,A,1,VAT,0044.0,
+$TSMES,27/11/13,09:16:08.907,BLTNK, 0,A,1,VAT,0042.4,
+$TSMES,27/11/13,09:17:47.515,BLTNK, 0,A,1,VAT,0044.3,
+$TSMES,27/11/13,09:19:44.039,BLTNK, 0,A,1,VAT,0043.6,
+$TSMES,27/11/13,09:21:49.166,BLTNK, 0,A,1,VAT,0044.2,
+$TSMES,27/11/13,09:26:57.681,BLTNK, 0,A,1,VAT,0045.9,
+$TSMES,27/11/13,09:29:20.020,BLTNK, 0,A,1,VAT,0045.8,
+$TSMES,27/11/13,09:30:37.535,BLTNK, 0,A,1,VAT,0047.0,
+$TSMES,27/11/13,09:32:16.153,BLTNK, 0,A,1,VAT,0046.6,
+$TSMES,27/11/13,09:33:30.882,BLTNK, 0,A,1,VAT,0044.4,
+$TSMES,27/11/13,09:34:50.649,BLTNK, 0,A,1,VAT,0044.5,
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Added: trunk/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol
===================================================================
--- trunk/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol	                        (rev 0)
+++ trunk/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol	2014-05-05 15:00:37 UTC (rev 1753)
@@ -0,0 +1,81 @@
+id: c6ee2088-9720-46c0-b8d2-8f21c902676f
+name: Protocole EVHOE 2013
+benthos:
+comment: Protocole pour les tests 2013 avec Jean Jacques Rivoalen
+gearUseFeaturePmfmId:
+- 131
+- 828
+- 884
+- 965
+lengthClassesPmfmId:
+- 306
+- 622
+- 307
+- 302
+- 299
+- 1394
+- 1417
+- 1425
+- 1426
+- 1427
+- 283
+- 284
+- 285
+- 294
+- 295
+- 300
+- 301
+- 304
+- 318
+- 319
+- 322
+- 323
+- 661
+- 662
+species:
+- !SpeciesProtocol
+   id: 2a8122cf-d238-4820-a7b9-eacaf1f302bd
+   calcifySampleEnabled: true
+   countIfNoFrequencyEnabled: true
+   lengthStepPmfmId: 306
+   mandatorySampleCategoryId: []
+   speciesReferenceTaxonId: 1551
+   speciesSurveyCode: MERLMNG
+   weightEnabled: true
+- !SpeciesProtocol
+   id: 0de3f5c9-0ca9-4a7c-84aa-323d9eaa7f7f
+   countIfNoFrequencyEnabled: true
+   mandatorySampleCategoryId: []
+   speciesReferenceTaxonId: 872
+   speciesSurveyCode: ACAN-PEL
+   weightEnabled: true
+- !SpeciesProtocol
+   id: ddffa4c9-cbb5-447f-a829-e2ac0cfea0f5
+   countIfNoFrequencyEnabled: true
+   lengthStepPmfmId: 306
+   mandatorySampleCategoryId: []
+   speciesReferenceTaxonId: 1732
+   speciesSurveyCode: ACANPAL
+   weightEnabled: true
+vesselUseFeaturePmfmId:
+- 173
+- 194
+- 230
+- 782
+- 843
+- 844
+- 846
+- 847
+- 848
+- 849
+- 850
+- 851
+- 857
+- 858
+- 859
+- 861
+- 862
+- 863
+- 881
+- 882
+- 883

    

tchemit＠users.forge.codelutin.com

tags

participants (1)