April 2010 - Isis-fish-commits - mailman.cloud.codelutin.com

r3039 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher
by chatellier＠users.labs.libre-entreprise.org April 30, 2010

April 30, 2010

Author: chatellier Date: 2010-04-30 12:09:05 +0000 (Fri, 30 Apr 2010) New Revision: 3039 Log: Fix duplicated preScript storage (just deprecated, still used when simulating from comand line) Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationJob.java Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java 2010-04-30 07:41:38 UTC (rev 3038) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java 2010-04-30 12:09:05 UTC (rev 3039) @@ -98,13 +98,15 @@ * Constructor. * * @param control le control pour la simulation. - * @param param les parametres de simulation. + * @param param les parametres de simulation (can be null) */ public SimulationItem(SimulationControl control, SimulationParameter param) { this.control = control; // use soft reference to improve minimum memory usage - this.parameter = new SimulationParameterCache(param); + if (param != null) { + this.parameter = new SimulationParameterCache(param); + } } /** @@ -171,7 +173,20 @@ * @deprecated use cached simulation parameter instead */ public String getSimulationPrescriptContent() { - return simulationPrescriptContent; + + String preScript = simulationPrescriptContent; + + // simulationPrescriptContent is not null when isis is lauched with + // simulation on comand line + // If preScript but params is not null, simulation has been launched by + // UI, use cached simulation parameters + if (preScript == null && parameter != null) { + if (parameter.getUsePreScript()) { + preScript = parameter.getPreScript(); + } + } + + return preScript; } /** Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationJob.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationJob.java 2010-04-30 07:41:38 UTC (rev 3038) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationJob.java 2010-04-30 12:09:05 UTC (rev 3039) @@ -255,11 +255,12 @@ //File zip = item.getSimulationZip(); // get prescript content, only if UsePreScript is set to true - String simulationPrescript = null; + // FIXME EC-20100410 use prescriot already present in params + /*String simulationPrescript = null; if(param.getUsePreScript()) { simulationPrescript = param.getPreScript(); item.setSimulationPrescriptContent(simulationPrescript); - } + }*/ launcher.simulate(simulationService, item); }

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r3038 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher
by chatellier＠users.labs.libre-entreprise.org April 30, 2010

April 30, 2010

Author: chatellier Date: 2010-04-30 07:41:38 +0000 (Fri, 30 Apr 2010) New Revision: 3038 Log: Simulation prescript is still reference without caching Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java 2010-04-29 16:37:33 UTC (rev 3037) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java 2010-04-30 07:41:38 UTC (rev 3038) @@ -167,6 +167,8 @@ * Get simulation prescript. * * @return the simulationPrescriptPath + * + * @deprecated use cached simulation parameter instead */ public String getSimulationPrescriptContent() { return simulationPrescriptContent; @@ -176,6 +178,8 @@ * Set simulation prescript. * * @param simulationPrescriptContent the simulationPrescriptContent to set + * + * @deprecated use cached simulation parameter instead */ public void setSimulationPrescriptContent(String simulationPrescriptContent) { this.simulationPrescriptContent = simulationPrescriptContent;

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r3037 - isis-fish/trunk
by chatellier＠users.labs.libre-entreprise.org April 29, 2010

April 29, 2010

Author: chatellier Date: 2010-04-29 16:37:33 +0000 (Thu, 29 Apr 2010) New Revision: 3037 Log: Update changelog Modified: isis-fish/trunk/changelog.txt Modified: isis-fish/trunk/changelog.txt =================================================================== --- isis-fish/trunk/changelog.txt 2010-04-29 16:36:24 UTC (rev 3036) +++ isis-fish/trunk/changelog.txt 2010-04-29 16:37:33 UTC (rev 3037) @@ -1,3 +1,9 @@ +isis-fish (3.3.0.4) stable; urgency=low + + * Add simulation parameter cache to not keep simulation prescript on memory + + -- jeu. avril 29 18:47:58 CEST 2010 + isis-fish (3.3.0.3) stable; urgency=low * Add new option to customize qsub options

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r3036 - in isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator: . launcher
by chatellier＠users.labs.libre-entreprise.org April 29, 2010

April 29, 2010

Author: chatellier Date: 2010-04-29 16:36:24 +0000 (Thu, 29 Apr 2010) New Revision: 3036 Log: Add documentation for previous commit (SimulationParameter cache) Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterCache.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterImpl.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java 2010-04-29 16:19:05 UTC (rev 3035) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java 2010-04-29 16:36:24 UTC (rev 3036) @@ -18,7 +18,6 @@ package fr.ifremer.isisfish.simulator; -import java.io.File; import java.util.Collection; import java.util.List; import java.util.Map; @@ -36,12 +35,25 @@ import fr.ifremer.isisfish.simulator.sensitivity.SensitivityCalculator; /** - * TODO add comment here. + * Contains all parameters for one simulation. + * + * {@link SimulationParameter} must now be loaded from a {@link Properties} + * object. + * {@link #toProperties()} method, now return a new {@link Properties} object + * filled with : + * <ul> + * <li>non modified original properties + * <li>new properties if some objects has been instantiated by getters(). + * </ul> * + * Created: 10 janv. 2006 17:03:37 + * + * @author poussin * @author chatellier + * * @version $Revision$ - * - * Last update : $Date$ + * + * Last update: $Date$ * By : $Author$ */ public interface SimulationParameter { @@ -52,23 +64,23 @@ * * @return la liste d'erreur */ - public abstract List<String> check(); + public List<String> check(); /** * Get isis fish version for the simulation. * - * Defaut value to : {@link IsisConfig#getVersion()}. + * Default value to : {@link IsisConfig#getVersion()}. * * @return the isisFishVersion. */ - public abstract String getIsisFishVersion(); + public String getIsisFishVersion(); /** * Set isis fish Version. * * @param isisFishVersion The isisFishVersion to set. */ - public abstract void setIsisFishVersion(String isisFishVersion); + public void setIsisFishVersion(String isisFishVersion); /** * Get description property. @@ -87,7 +99,7 @@ public abstract void setDescription(String description); /** - * Load region conresponding to {@link #regionName}. + * Load region corresponding to {@link #getRegionName()}. * * @return the region */ @@ -552,7 +564,7 @@ * </ul> * * @return L'objet Properties representant les parametres - * @see #fromProperties(File, Properties) + * @see #fromProperties(Properties) */ public abstract Properties toProperties(); Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterCache.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterCache.java 2010-04-29 16:19:05 UTC (rev 3035) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterCache.java 2010-04-29 16:36:24 UTC (rev 3036) @@ -45,8 +45,17 @@ import fr.ifremer.isisfish.simulator.sensitivity.SensitivityCalculator; /** - * TODO add comment here. + * SimulationParameter soft reference implementation. * + * Store simulation file on disk, and a soft reference of delegate real + * SimulationParameter. + * + * If soft reference has been cleared by garbage collector, reload it from + * disk. + * + * Warning, use only this class for parameter reading. Using setters cause + * parameters to be written on disk. Use with caution. + * * @author chatellier * @version $Revision$ * @@ -54,8 +63,11 @@ * By : $Author$ */ public class SimulationParameterCache implements SimulationParameter { - + + /** Parameter file (disk storage). */ protected File paramFile; + + /** Parameter memory reference. */ protected SoftReference<SimulationParameter> ref; /** Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterImpl.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterImpl.java 2010-04-29 16:19:05 UTC (rev 3035) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterImpl.java 2010-04-29 16:36:24 UTC (rev 3036) @@ -20,7 +20,6 @@ import static org.nuiton.i18n.I18n._; -import java.io.File; import java.lang.reflect.Field; import java.lang.reflect.Modifier; import java.util.ArrayList; @@ -66,25 +65,12 @@ import fr.ifremer.isisfish.util.ConverterUtil; /** - * Contains all parameters for one simulation. - * - * {@link SimulationParameter} must now be loaded from a {@link Properties} - * object. - * {@link #toProperties()} method, now return a new {@link Properties} object - * filled with : - * <ul> - * <li>non modified original properties - * <li>new properties if some objects has been instantiated by getters(). - * </ul> + * Real {@link SimulationParameter} implementation. * - * Created: 10 janv. 2006 17:03:37 - * - * @author poussin * @author chatellier - * * @version $Revision$ - * - * Last update: $Date$ + * + * Last update : $Date$ * By : $Author$ */ public class SimulationParameterImpl implements SimulationParameter { Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java 2010-04-29 16:19:05 UTC (rev 3035) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java 2010-04-29 16:36:24 UTC (rev 3036) @@ -102,6 +102,8 @@ */ public SimulationItem(SimulationControl control, SimulationParameter param) { this.control = control; + + // use soft reference to improve minimum memory usage this.parameter = new SimulationParameterCache(param); }

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r3035 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator
by chatellier＠users.labs.libre-entreprise.org April 29, 2010

April 29, 2010

Author: chatellier Date: 2010-04-29 16:19:05 +0000 (Thu, 29 Apr 2010) New Revision: 3035 Log: Add simulation cache to not keep all simulation huge prescript in memory. Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java 2010-04-29 16:14:25 UTC (rev 3034) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java 2010-04-29 16:19:05 UTC (rev 3035) @@ -1,211 +1,58 @@ /* *##% - * Copyright (C) 2006 - 2010 Ifremer, Code Lutin, Cédric Pineau, Benjamin Poussin - * - * This program is free software; you can redistribute it and/or modify it under - * the terms of the GNU General Public License as published by the Free Software - * Foundation; either version 2 of the License, or (at your option) any later - * version. - * - * This program is distributed in the hope that it will be useful, but WITHOUT - * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS - * FOR A PARTICULAR PURPOSE. See the GNU General Public License for more - * details. - * - * You should have received a copy of the GNU General Public License along with - * this program; if not, write to the Free Software Foundation, Inc., 59 Temple - * Place - Suite 330, Boston, MA 02111-1307, USA. ##% - */ + * Copyright (C) 2010 Code Lutin, Chatellier Eric + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program; if not, write to the Free Software + * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. + *##%*/ package fr.ifremer.isisfish.simulator; -import static org.nuiton.i18n.I18n._; - import java.io.File; -import java.lang.reflect.Field; -import java.lang.reflect.Modifier; -import java.util.ArrayList; -import java.util.Arrays; import java.util.Collection; -import java.util.HashMap; -import java.util.LinkedHashMap; -import java.util.LinkedList; import java.util.List; import java.util.Map; import java.util.Properties; -import org.apache.commons.beanutils.ConvertUtilsBean; -import org.apache.commons.lang.StringUtils; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.nuiton.math.matrix.MatrixFactory; -import org.nuiton.math.matrix.MatrixHelper; import org.nuiton.math.matrix.MatrixND; -import org.nuiton.topia.TopiaContext; import org.nuiton.topia.TopiaException; -import org.nuiton.topia.persistence.TopiaEntity; -import org.nuiton.util.SortedProperties; -import org.nuiton.util.StringUtil; import fr.ifremer.isisfish.IsisConfig; -import fr.ifremer.isisfish.IsisFishDAOHelper; -import fr.ifremer.isisfish.IsisFishException; -import fr.ifremer.isisfish.datastore.AnalysePlanStorage; import fr.ifremer.isisfish.datastore.RegionStorage; -import fr.ifremer.isisfish.datastore.RuleStorage; -import fr.ifremer.isisfish.datastore.SensitivityExportStorage; -import fr.ifremer.isisfish.datastore.SensitivityStorage; import fr.ifremer.isisfish.entities.Population; -import fr.ifremer.isisfish.entities.PopulationDAO; import fr.ifremer.isisfish.entities.Strategy; -import fr.ifremer.isisfish.entities.StrategyDAO; -import fr.ifremer.isisfish.export.ExportHelper; import fr.ifremer.isisfish.export.SensitivityExport; import fr.ifremer.isisfish.rule.Rule; -import fr.ifremer.isisfish.rule.RuleHelper; import fr.ifremer.isisfish.simulator.sensitivity.SensitivityCalculator; -import fr.ifremer.isisfish.util.ConverterUtil; /** - * Contains all parameters for one simulation. - * - * {@link SimulationParameter} must now be loaded from a {@link Properties} - * object. - * {@link #toProperties()} method, now return a new {@link Properties} object - * filled with : - * <ul> - * <li>non modified original properties - * <li>new properties if some objects has been instantiated by getters(). - * </ul> + * TODO add comment here. * - * Created: 10 janv. 2006 17:03:37 - * - * @author poussin * @author chatellier - * * @version $Revision$ - * - * Last update: $Date$ + * + * Last update : $Date$ * By : $Author$ */ -public class SimulationParameter { +public interface SimulationParameter { - /** Logger for this class. */ - private static Log log = LogFactory.getLog(SimulationParameter.class); - - /** Remember last read properties. */ - protected Properties propertiesParameters; - /** - * Isis-fish version that permit to do the simulation. - * Must be set just before simulation by simulator. - */ - protected String isisFishVersion; - - /** Description de la simulation. */ - protected String description; - - /** Nom de la region sur lequel on simule. */ - protected String regionName; - - /** Nombre d'année sur lequel on souhaite simuler. */ - protected Integer numberOfYear; - - /** Le nom de l'objet script a utiliser pour faire la simulation. */ - protected String simulatorName; - - /** Utilisation ou non des optimisations. */ - protected Boolean useOptimization; - - /** Utilisation ou non des statistiques. */ - protected Boolean useStatistic; - - /** La liste des strategies a utiliser pour la simulation. */ - protected List<Strategy> strategies; - - /** La liste des populations a utiliser pour la simulation. */ - protected List<Population> populations; - - /** Les effectifs initiaux des différentes population. */ - protected Map<Population, MatrixND> numbers; - - /** La liste des regles de gestions a utiliser pour la simulation. */ - protected List<Rule> rules; - - /** La liste des regles potentiellement ajoutée par les plans d'analyse. */ - protected List<String> extraRules; - - /** La liste des plans a utiliser pour la simulation. */ - protected List<AnalysePlan> analysePlans; - - /** Ma liste des exports automatique a faire en fin de simulation. */ - protected List<String> exportNames; - - /** Utilisation du script de pre simulation. */ - protected Boolean usePreScript; - - /** Le script de pre simulation a utiliser. */ - protected String preScript; - - /** Utilisation du plan d'analyse. */ - protected Boolean useAnalysePlan; - - /** - * Le numero de sequence de la liste des plans d'analyse. Le premier - * élement du plan doit etre 0. Si la simulation ne fait pas partie d'un - * plan la valeur est -1. */ - protected Integer analysePlanNumber; - - /** Export utilisés pour les analyses de sensibilités. */ - protected List<SensitivityExport> sensitivityExports; - - /** - * Nombre de simulation constituant l'analyse de sensibilité. - * - * FIXME ce parametre ne devrait pas ce trouver à cet endroit. - * Ce n'est pas un parametres, mais une infos de simulation. - * Cela permet de savoir combien de simulation il y a au total - * pour savoir quand elle sont terminées. - */ - protected Integer numberOfSensitivitySimulation; - - /** Export utilisés pour les analyses de sensibilités. */ - protected SensitivityCalculator sensitivityCalculator; - - /** La liste des resultats qui nous interesse. */ - protected Collection<String> resultEnabled; - - /** Autre parametre defini par l'utilisateur. */ - protected Map<String, String> tagValue; - - /** - * Si vrai seul les exports automatiques ne sont souhaiter, la simulation - * pourrait etre supprimée a la fin. - */ - protected Boolean onlyExport; - - /** Le niveau de log du simulateur à utiliser pendant la simulation. Par defaut info. */ - protected String simulLogLevel = "info"; - /** Le niveau de log des scripts à utiliser pendant la simulation. Par defaut info. */ - protected String scriptLogLevel = "info"; - /** Le niveau de log des librairies à utiliser pendant la simulation. Par defaut error. */ - protected String libLogLevel = "error"; - - /** La region corespondant au parametre {@link #regionName}. */ - protected transient RegionStorage region; - - /** * Permet de verifier que tous les parametres sont bon. Si ce n'est pas le * cas la liste retournée contient la liste des messages d'erreur. * * @return la liste d'erreur */ - public List<String> check() { - List<String> result = new ArrayList<String>(); - // TODO faire la verif et pour chaque erreur mettre un message - // dans la liste result (par exemple si pas d'effectif - // pour une pop - return result; - } + public abstract List<String> check(); /** * Get isis fish version for the simulation. @@ -214,27 +61,14 @@ * * @return the isisFishVersion. */ - public String getIsisFishVersion() { - // if not already set - if (isisFishVersion == null) { - if (propertiesParameters != null) { - isisFishVersion = propertiesParameters.getProperty("isisFishVersion", ""); - } else { - // default value - isisFishVersion = IsisConfig.getVersion(); - } - } - return isisFishVersion; - } + public abstract String getIsisFishVersion(); /** * Set isis fish Version. * * @param isisFishVersion The isisFishVersion to set. */ - public void setIsisFishVersion(String isisFishVersion) { - this.isisFishVersion = isisFishVersion; - } + public abstract void setIsisFishVersion(String isisFishVersion); /** * Get description property. @@ -243,285 +77,31 @@ * * @return Description property. */ - public String getDescription() { + public abstract String getDescription(); - if (description == null) { - if (propertiesParameters != null) { - description = propertiesParameters.getProperty("description", ""); - } else { - // default value - description = ""; - } - } - return this.description; - } - /** * Set simulation description. * * @param description the description to set. */ - public void setDescription(String description) { - this.description = description; - } + public abstract void setDescription(String description); /** * Load region conresponding to {@link #regionName}. * * @return the region */ - public RegionStorage getRegion() { + public abstract RegionStorage getRegion(); - if (region == null || !region.getName().equals(getRegionName())) { - // bien faire attention ici que la bonne region est ouverte - // - isis-database-3 dans le cas d'une region normale - // - simulation dans le cas d'une simulation - region = RegionStorage.getRegion(getRegionName()); - } else { - if (log.isDebugEnabled()) { - log.debug(_("Region %s already inited", getRegionName())); - } - } - return this.region; - } + public abstract MatrixND getNumberOf(Population pop); - public MatrixND getNumberOf(Population pop) { - if (numbers == null) { - numbers = new LinkedHashMap<Population, MatrixND>(); - } - MatrixND result = numbers.get(pop); - if (result == null) { - List groups = pop.getPopulationGroup(); - List zones = pop.getPopulationZone(); - - if (groups.size() == 0) { - groups.add("No group"); - } - if (zones.size() == 0) { - zones.add("No zone"); - } - List[] semantics = new List[] { groups, zones }; - result = MatrixFactory.getInstance().create(semantics); - - numbers.put(pop, result); - } - return result; - } - /** - * Permet de mettre les parametres de la regle sous une forme String pour - * pouvoir les relire ensuite. - * - * @param ruleIndex l'index de la rule - * @param rule La regle dont on souhaite mettre les parametres dans l'objet - * Properties retourne - * @return L'objet Properties contenant les valeurs des parametres de la - * regle - */ - protected Properties ruleParametertoProperties(int ruleIndex, Rule rule) { - Properties result = new Properties(); - ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion() - .getStorage()); - for (String paramName : RuleStorage.getParameterNames(rule).keySet()) { - String paramValueString; - try { - Object value = RuleStorage.getParameterValue(rule, paramName); - paramValueString = beanUtils.convert(value); - if (paramValueString != null) { - result.setProperty("rule." + ruleIndex + ".parameter." + paramName, paramValueString); - } - } catch (IsisFishException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't convert parameter value to String: " + paramName, eee); - } - } - } - - return result; - } - - /** - * Permet de mettre les parametres de l'export sous une forme String pour - * pouvoir les relire ensuite. - * - * @param sensitivityExportIndex l'index de l'export - * @param sensitivityExport l'export dont on souhaite mettre les parametres dans l'objet - * Properties retourné - * @return L'objet Properties contenant les valeurs des parametres de l'export - */ - protected Properties sensitivityExportParametertoProperties( - int sensitivityExportIndex, SensitivityExport sensitivityExport) { - Properties result = new Properties(); - ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion().getStorage()); - for (String paramName : SensitivityExportStorage.getParameterNames(sensitivityExport).keySet()) { - try { - Object value = SensitivityExportStorage.getParameterValue( - sensitivityExport, paramName); - String paramValueString = beanUtils.convert(value); - if (paramValueString != null) { - result.setProperty("sensitivityexport." - + sensitivityExportIndex + ".parameter." - + paramName, paramValueString); - } - } catch (IsisFishException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't convert parameter value to String: " - + paramName, eee); - } - } - } - - return result; - } - - /** - * Permet de mettre les parametres du calculateur sous une forme String pour - * pouvoir les relire ensuite. - * - * @param sensitivityIndex l'index du calculateur de sensitivity - * @param calculator Le calculateurdont on souhaite mettre les parametres dans l'objet - * Properties retourne - * @return L'objet Properties contenant les valeurs des parametres du calculateur de sensibilité - */ - protected Properties sensitivityCalculatorParametertoProperties( - int sensitivityIndex, SensitivityCalculator calculator) { - Properties result = new Properties(); - ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion().getStorage()); - for (String paramName : SensitivityStorage.getParameterNames(calculator).keySet()) { - try { - Object value = SensitivityStorage.getParameterValue(calculator, - paramName); - String paramValueString = beanUtils.convert(value); - if (paramValueString != null) { - result.setProperty("sensitivity." + sensitivityIndex + ".parameter." + paramName, paramValueString); - } - } catch (IsisFishException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't convert parameter value to String: " - + paramName, eee); - } - } - } - - return result; - } - - /** - * Permet de mettre les parametres du plan sous une forme String pour - * pouvoir les relire ensuite. - * - * @param planIndex l'index du plan - * @param plan Le plan dont on souhaite mettre les parametres dans l'objet - * Properties retourne - * @return L'objet Properties contenant les valeurs des parametres du plan - */ - protected Properties planParametertoProperties(int planIndex, - AnalysePlan plan) { - Properties result = new Properties(); - ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion().getStorage()); - for (String paramName : AnalysePlanStorage.getParameterNames(plan).keySet()) { - try { - Object value = AnalysePlanStorage.getParameterValue(plan,paramName); - String paramValueString = beanUtils.convert(value); - if (paramValueString != null) { - result.setProperty("plan." + planIndex + ".parameter." - + paramName, paramValueString); - } - } catch (IsisFishException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't convert parametre value to String: " - + paramName, eee); - } - } - } - - return result; - } - - /** - * Recupere dans prop les valeurs des champs specifique au plan et met a - * jour les champs du plan. - * - * @param planIndex l'index du plan - * @param plan le plan dont les parametres doivent etre lu depuis les - * proprietes - * @param props les proprietes contenant les parametre du plan - */ - protected void populateAnalysePlan(int planIndex, AnalysePlan plan, - Properties props) { - ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion() - .getStorage()); - String planName = AnalysePlanStorage.getName(plan); - String paramTag = "plan." + planIndex + ".parameter."; - - for (Map.Entry<String, Class<?>> entry : AnalysePlanStorage.getParameterNames(plan).entrySet()) { - String propName = entry.getKey(); - Class<?> type = entry.getValue(); - if (TopiaEntity.class.isAssignableFrom(type)) { - type = TopiaEntity.class; - } - String valueString = props.getProperty(paramTag + propName); - Object value = beanUtils.convert(valueString, type); - try { - AnalysePlanStorage.setParameterValue(plan, propName, value); - } catch (IsisFishException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't reload field " + propName + " for plan " - + planName, eee); - } - } - } - } - - /** - * Recupere dans prop les valeurs des champs specifique au calculateur de - * sensibilité et met a jour les champs du calculateur. - * - * @param calculatorIndex l'index du calculateur - * @param calculator le calculateur dont les parametres doivent etre lu depuis lesproprietes - * @param props les proprietes contenant les parametre du calculateur - */ - protected void populateSensitivityCalculator(int calculatorIndex, - SensitivityCalculator calculator, Properties props) { - ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion() - .getStorage()); - String calculatorName = SensitivityStorage.getName(calculator); - String paramTag = "sensitivity." + calculatorIndex + ".parameter."; - - for (Map.Entry<String, Class<?>> entry : SensitivityStorage.getParameterNames(calculator).entrySet()) { - String propName = entry.getKey(); - Class<?> type = entry.getValue(); - if (TopiaEntity.class.isAssignableFrom(type)) { - type = TopiaEntity.class; - } - String valueString = props.getProperty(paramTag + propName); - Object value = beanUtils.convert(valueString, type); - try { - SensitivityStorage.setParameterValue(calculator, propName, value); - } catch (IsisFishException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't reload field " + propName - + " for sensitivity calculator " + calculatorName, - eee); - } - } - } - } - - /** * Get extra rules list. * * @return Returns the extraRules. */ - public List<String> getExtraRules() { + public abstract List<String> getExtraRules(); - if (extraRules == null) { - // no properties in config ? - extraRules = new ArrayList<String>(); - } - return extraRules; - } - /** * Add extra rules. * @@ -530,81 +110,19 @@ * * @param extraRules extra rules to add */ - public void addExtraRules(String... extraRules) { - getExtraRules().addAll(Arrays.asList(extraRules)); - } + public abstract void addExtraRules(String... extraRules); /** * Get instantiated population list. * * @return Returns the populations. */ - public List<Population> getPopulations() { - if (populations == null) { - populations = new ArrayList<Population>(); + public abstract List<Population> getPopulations(); - if (propertiesParameters != null) { - - try { - // On verifie tout d'abord que l'on ai pas dans une simulation - // si on y es, on utilise le context static non null du thread local - // Resoud les lazy exceptions des parametres des regles - boolean mustClose = false; - TopiaContext tx = SimulationContext.get().getDB(); - - if (tx == null) { - // not in simulation, create transaction - tx = getRegion().getStorage().beginTransaction(); - mustClose = true; - } - - PopulationDAO populationDAO = IsisFishDAOHelper - .getPopulationDAO(tx); - String[] populationList = propertiesParameters.getProperty( - "populations", "").split(","); - for (String name : populationList) { - if (name != null && !"".equals(name)) { - try { - Population population = populationDAO.findByName(name); - populations.add(population); - - String numberAsString = propertiesParameters.getProperty("population." + name + ".number"); - List number = MatrixHelper.convertStringToList(numberAsString); - MatrixND mat = getNumberOf(population); - mat.fromList(number); - } catch (TopiaException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't find population: " + name, eee); - } - } - } - } - - // si la transaction a été ouverte (pas dans une simulation) - // on la referme - if (mustClose) { - tx.closeContext(); - } - } catch (TopiaException eee1) { - if (log.isWarnEnabled()) { - log.warn("Can't get PopulationDAO", eee1); - } - } - } else { - if (log.isDebugEnabled()) { - log.debug("No last read properties, skip population reloading"); - } - } - } - return populations; - } - /** * @param populations The populations to set. */ - public void setPopulations(List<Population> populations) { - this.populations = populations; - } + public abstract void setPopulations(List<Population> populations); /** * Get instantiated strategies list. @@ -613,80 +131,21 @@ * * @return Returns the strategies. */ - public List<Strategy> getStrategies() { + public abstract List<Strategy> getStrategies(); - if (strategies == null) { - - strategies = new ArrayList<Strategy>(); - - if (propertiesParameters != null) { - strategies = new ArrayList<Strategy>(); - - try { - - // On verifie tout d'abord que l'on ai pas dans une simulation - // si on y es, on utilise le context static non null du thread local - // Resoud les lazy exceptions des parametres des regles - boolean mustClose = false; - TopiaContext tx = SimulationContext.get().getDB(); - - if (tx == null) { - // not in simulation, create transaction - tx = getRegion().getStorage().beginTransaction(); - mustClose = true; - } - - StrategyDAO strategyDAO = IsisFishDAOHelper.getStrategyDAO(tx); - String[] strategyList = propertiesParameters.getProperty("strategies", "").split(","); - for (String name : strategyList) { - if (name != null && !"".equals(name)) { - try { - Strategy str = strategyDAO.findByName(name); - strategies.add(str); - } catch (TopiaException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't find strategy: " + name, eee); - } - } - } - } - - // si la transaction a été ouverte (pas dans une simulation) - // on la referme - if (mustClose) { - tx.closeContext(); - } - } catch (TopiaException eee1) { - if (log.isWarnEnabled()) { - log.warn("Can't get StrategyDAO", eee1); - } - } - } else { - if (log.isDebugEnabled()) { - log.debug("No last read properties, skip strategies reloading"); - } - } - } - return strategies; - } - /** * Set strategies list. * * @param strategies strategies list to set */ - public void setStrategies(List<Strategy> strategies) { - this.strategies = strategies; - } + public abstract void setStrategies(List<Strategy> strategies); /** * Add new analyse plan. * * @param plan analyse plan to add */ - public void addAnalysePlan(AnalysePlan plan) { - getAnalysePlans().add(plan); - } + public abstract void addAnalysePlan(AnalysePlan plan); /** * Remove a plan. @@ -694,9 +153,7 @@ * @param plan * @return {@code true} if this list contained the specified element */ - public boolean removeAnalysePlan(AnalysePlan plan) { - return getAnalysePlans().remove(plan); - } + public abstract boolean removeAnalysePlan(AnalysePlan plan); /** * Get instantiated analyse plan list. @@ -705,81 +162,32 @@ * * @return Returns the plans. */ - public List<AnalysePlan> getAnalysePlans() { - if (analysePlans == null) { + public abstract List<AnalysePlan> getAnalysePlans(); - analysePlans = new ArrayList<AnalysePlan>(); - - if (propertiesParameters != null) { - // analyse plan - String[] planList = propertiesParameters.getProperty("plans", - "").split(","); - int planIndex = 0; - for (String name : planList) { - if (name != null && !"".equals(name)) { - try { - AnalysePlan plan = AnalysePlanStorage - .getAnalysePlan(name) - .getNewAnalysePlanInstance(); - populateAnalysePlan(planIndex++, plan, propertiesParameters); - analysePlans.add(plan); - } catch (IsisFishException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't find plan: " + name, eee); - } - } - } - } - } else { - if (log.isDebugEnabled()) { - log.debug("No last read properties, skip plans reloading"); - } - } - } - return this.analysePlans; - } - /** * Set plans list. * * @param plans plans to set */ - public void setAnalysePlans(List<AnalysePlan> plans) { - this.analysePlans = plans; - } + public abstract void setAnalysePlans(List<AnalysePlan> plans); /** * Retrun {@code true} if simulation is composed of independant plan only. * * @return {@code true} if all {@link AnalysePlan} are {@link AnalysePlanIndependent} */ - public boolean isIndependentPlan() { - boolean result = true; - for (AnalysePlan plan : getAnalysePlans()) { - if (!(plan instanceof AnalysePlanIndependent)) { - result = false; - break; - } - } - return result; - } + public abstract boolean isIndependentPlan(); /** * Clear plan list. */ - public void clearPlans() { - if (analysePlans != null) { - analysePlans.clear(); - } - } + public abstract void clearPlans(); /** * Add new rule to rules list. * @param rule rule to add */ - public void addRule(Rule rule) { - getRules().add(rule); - } + public abstract void addRule(Rule rule); /** * Remove a rule. @@ -787,86 +195,26 @@ * @param rule rule to remove * @return {@code true} if this list contained the specified element */ - public boolean removeRule(Rule rule) { - return getRules().remove(rule); - } + public abstract boolean removeRule(Rule rule); /** * Get parameters rules list. * * @return the rules */ - public List<Rule> getRules() { - if (rules == null) { - rules = new ArrayList<Rule>(); + public abstract List<Rule> getRules(); - if (propertiesParameters != null) { - try { - // On verifie tout d'abord que l'on ai pas dans une simulation - // si on y es, on utilise le context static non null du thread local - // Resoud les lazy exceptions des parametres des regles - boolean mustClose = false; - TopiaContext tx = SimulationContext.get().getDB(); - - if (tx == null) { - // not in simulation, create transaction - tx = getRegion().getStorage().beginTransaction(); - mustClose = true; - } - - // rules - String[] ruleList = propertiesParameters.getProperty("rules", "").split(","); - int ruleIndex = 0; - for (String name : ruleList) { - if (name != null && !"".equals(name)) { - try { - Rule rule = RuleStorage.getRule(name).getNewRuleInstance(); - RuleHelper.populateRule(ruleIndex++, tx, rule, propertiesParameters); - rules.add(rule); - } catch (IsisFishException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't find rule: " + name, eee); - } - } - } - } - - // si la transaction a été ouverte (pas dans une simulation) - // on la referme - if (mustClose) { - tx.closeContext(); - } - } catch (TopiaException eee1) { - if (log.isWarnEnabled()) { - log.warn("Can't get TopiaContext", eee1); - } - } - } else { - if (log.isDebugEnabled()) { - log.debug("No last read properties, skip rule reloading"); - } - } - } - return rules; - } - /** * Set simulation rules. * * @param rules rules to set */ - public void setRules(List<Rule> rules) { - this.rules = rules; - } + public abstract void setRules(List<Rule> rules); /** * Clear rule list. */ - public void clearRules() { - if (rules != null) { - rules.clear(); - } - } + public abstract void clearRules(); /** * Return if optimization sould be used. @@ -875,26 +223,14 @@ * * @return use optimization */ - public boolean getUseOptimization() { + public abstract boolean getUseOptimization(); - if (useOptimization == null) { - if (propertiesParameters != null) { - useOptimization = Boolean.valueOf(propertiesParameters.getProperty("useOptimization", "true")); - } else { - useOptimization = Boolean.TRUE; - } - } - return useOptimization.booleanValue(); - } - /** * Change use optimization parameter. * * @param useOptimization use optimization to set */ - public void setUseOptimization(boolean useOptimization) { - this.useOptimization = useOptimization; - } + public abstract void setUseOptimization(boolean useOptimization); /** * Return if statistic sould be used. @@ -903,57 +239,28 @@ * * @return use statistic */ - public boolean getUseStatistic() { + public abstract boolean getUseStatistic(); - if (useStatistic == null) { - if (propertiesParameters != null) { - useStatistic = Boolean.valueOf(propertiesParameters.getProperty("useStatistic", "false")); - } else { - useStatistic = Boolean.FALSE; - } - } - return this.useStatistic; - } - /** * Change use statistic property. * * @param useStatistic use statistic to set */ - public void setUseStatistic(boolean useStatistic) { - this.useStatistic = useStatistic; - } + public abstract void setUseStatistic(boolean useStatistic); /** * Get export names list. * * @return export names list */ - public List<String> getExportNames() { - if (exportNames == null) { - exportNames = new ArrayList<String>(); + public abstract List<String> getExportNames(); - if (propertiesParameters != null) { - // exports - String[] exportList = propertiesParameters.getProperty("exports", "").split(","); - for (String name : exportList) { - if (name != null && !"".equals(name)) { - exportNames.add(name); - } - } - } - } - return this.exportNames; - } - /** * Set export names list. * * @param exportNames export names list to set */ - public void setExportNames(List<String> exportNames) { - this.exportNames = exportNames; - } + public abstract void setExportNames(List<String> exportNames); /** * Get number of sensitivity simulation. @@ -962,30 +269,15 @@ * * @return the numberOfSensitivitySimulation */ - public int getNumberOfSensitivitySimulation() { + public abstract int getNumberOfSensitivitySimulation(); - if (numberOfSensitivitySimulation == null) { - - if (propertiesParameters != null) { - numberOfSensitivitySimulation = Integer.valueOf(propertiesParameters.getProperty( - "numberOfSensitivitySimulation", "-1")); - } else { - numberOfSensitivitySimulation = Integer.valueOf(-1); - } - } - - return numberOfSensitivitySimulation.intValue(); - } - /** * Set number of sensitivity simulation. * * @param numberOfSensitivitySimulation number of sensitivity simulation to set */ - public void setNumberOfSensitivitySimulation( - int numberOfSensitivitySimulation) { - this.numberOfSensitivitySimulation = numberOfSensitivitySimulation; - } + public abstract void setNumberOfSensitivitySimulation( + int numberOfSensitivitySimulation); /** * Get instanciated sensitivity calculator. @@ -994,38 +286,13 @@ * * @return the sensitivityCalculator */ - public SensitivityCalculator getSensitivityCalculator() { + public abstract SensitivityCalculator getSensitivityCalculator(); - if (sensitivityCalculator == null) { - if (propertiesParameters != null) { - String calculatorName = propertiesParameters - .getProperty("sensitivitycalculator"); - if (!StringUtils.isEmpty(calculatorName)) { - try { - SensitivityStorage sensitivityStorage = SensitivityStorage.getSensitivity(calculatorName); - sensitivityCalculator = sensitivityStorage.getNewSensitivityInstance(); - // 0 = only single sensitivity - populateSensitivityCalculator(0, sensitivityCalculator, propertiesParameters); - } catch (IsisFishException eee) { - sensitivityCalculator = null; - if (log.isWarnEnabled()) { - log.warn("Can't find sensitivity: " + sensitivityCalculator, eee); - } - } - } - } - } - - return sensitivityCalculator; - } - /** * @param sensitivityCalculator the sensitivityCalculator to set */ - public void setSensitivityCalculator( - SensitivityCalculator sensitivityCalculator) { - this.sensitivityCalculator = sensitivityCalculator; - } + public abstract void setSensitivityCalculator( + SensitivityCalculator sensitivityCalculator); /** * Return loaded sensitivity export. @@ -1034,154 +301,55 @@ * * @return the sensitivityExportNames */ - public List<SensitivityExport> getSensitivityExport() { - if (sensitivityExports == null) { - sensitivityExports = new ArrayList<SensitivityExport>(); + public abstract List<SensitivityExport> getSensitivityExport(); - if (propertiesParameters != null) { - try { - // On verifie tout d'abord que l'on ai pas dans une simulation - // si on y es, on utilise le context static non null du thread local - // Resoud les lazy exceptions des parametres des regles - boolean mustClose = false; - TopiaContext tx = SimulationContext.get().getDbResult(); - - if (tx == null) { - // not in simulation, create transaction - tx = getRegion().getStorage().beginTransaction(); - mustClose = true; - } - - // sensitivity export - String[] sensitivityExportList = propertiesParameters - .getProperty("sensitivityexports", "").split(","); - int sensitivityExportIndex = 0; - for (String name : sensitivityExportList) { - try { - if (!StringUtils.isEmpty(name)) { - SensitivityExport sensitivityExport = SensitivityExportStorage - .getSensitivityExport(name) - .getNewSensitivityExportInstance(); - ExportHelper.populateSensitivityExport( - sensitivityExportIndex++, tx, - sensitivityExport, - propertiesParameters); - sensitivityExports.add(sensitivityExport); - } - } catch (IsisFishException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't find SensitivityExport: " + name, eee); - } - } - } - - // si la transaction a été ouverte (pas dans une simulation) - // on la referme - if (mustClose) { - tx.closeContext(); - } - } catch (TopiaException eee1) { - if (log.isWarnEnabled()) { - log.warn("Can't get TopiaContext", eee1); - } - } - } else { - if (log.isDebugEnabled()) { - log.debug("No last read properties, skip sensitivity exports reloading"); - } - } - } - return sensitivityExports; - } - /** * @param sensitivityExport the sensitivityExportNames to set */ - public void setSensitivityExport(List<SensitivityExport> sensitivityExport) { - this.sensitivityExports = sensitivityExport; - } + public abstract void setSensitivityExport( + List<SensitivityExport> sensitivityExport); /** * Get use analyse plans property. * * @return use analyse plan. */ - public boolean getUseAnalysePlan() { + public abstract boolean getUseAnalysePlan(); - if (useAnalysePlan == null) { - - if (propertiesParameters != null) { - useAnalysePlan = Boolean.valueOf(propertiesParameters.getProperty("useAnalysePlan", "false")); - } else { - useAnalysePlan = Boolean.FALSE; - } - } - return this.useAnalysePlan; - } - /** * Set use analyse plans property. * * @param useAnalysePlan use analyse plan to set */ - public void setUseAnalysePlan(boolean useAnalysePlan) { - this.useAnalysePlan = useAnalysePlan; - } + public abstract void setUseAnalysePlan(boolean useAnalysePlan); /** * Get simulation number in analyse plan. * * @return simulation number in analyse plan */ - public int getAnalysePlanNumber() { + public abstract int getAnalysePlanNumber(); - if (analysePlanNumber == null) { - - if (propertiesParameters != null) { - analysePlanNumber = Integer.valueOf(propertiesParameters.getProperty("analysePlanNumber", "-1")); - } else { - analysePlanNumber = Integer.valueOf(-1); - } - } - - return this.analysePlanNumber.intValue(); - } - /** * Set simulation number in analyse plan. * * @param analysePlanNumber analyse plan number to set */ - public void setAnalysePlanNumber(int analysePlanNumber) { - this.analysePlanNumber = analysePlanNumber; - } + public abstract void setAnalysePlanNumber(int analysePlanNumber); /** * Get number of year to run to simulate. * * @return number of year */ - public int getNumberOfYear() { + public abstract int getNumberOfYear(); - if (numberOfYear == null) { - - if (propertiesParameters != null) { - numberOfYear = Integer.valueOf(propertiesParameters.getProperty("numberOfYear", "1")); - } else { - numberOfYear = Integer.valueOf(1); - } - } - return numberOfYear.intValue(); - } - /** * Set number of year to run to simulate. * * @param numberOfYear number of year to set */ - public void setNumberOfYear(int numberOfYear) { - this.numberOfYear = numberOfYear; - } + public abstract void setNumberOfYear(int numberOfYear); /** * Get use prescript. @@ -1190,143 +358,70 @@ * * @return Returns the usePreScript. */ - public boolean getUsePreScript() { + public abstract boolean getUsePreScript(); - if (usePreScript == null) { - - if (propertiesParameters != null) { - usePreScript = Boolean.valueOf(propertiesParameters.getProperty("usePreScript", "false")); - } else { - usePreScript = Boolean.FALSE; - } - } - - return usePreScript.booleanValue(); - } - /** * Set use prescript property * * @param usePreScript use preScript to set */ - public void setUsePreScript(boolean usePreScript) { - this.usePreScript = usePreScript; - } + public abstract void setUsePreScript(boolean usePreScript); /** * Get prescript content. * * @return preScript content */ - public String getPreScript() { + public abstract String getPreScript(); - if (preScript == null) { - - if (propertiesParameters != null) { - preScript = propertiesParameters.getProperty("preScript", ""); - } else { - preScript = ""; - } - } - - return preScript; - } - /** * Set pre script content. * * @param preScript prescript content */ - public void setPreScript(String preScript) { - this.preScript = preScript; - } + public abstract void setPreScript(String preScript); /** * Get region name. * * @return region name */ - public String getRegionName() { + public abstract String getRegionName(); - if (regionName == null) { - if (propertiesParameters != null) { - regionName = propertiesParameters.getProperty("regionName", ""); - } else { - // defaut value - regionName = ""; - } - } - - return regionName; - } - /** * Set region name. * * @param regionName region name to set */ - public void setRegionName(String regionName) { - this.regionName = regionName; - } + public abstract void setRegionName(String regionName); /** * Set simulator name. * * @return simulator name. */ - public String getSimulatorName() { + public abstract String getSimulatorName(); - if (simulatorName == null) { - if (propertiesParameters != null) { - simulatorName = propertiesParameters.getProperty( - "simulatorName", "DefaultSimulator.java"); - } else { - simulatorName = "DefaultSimulator.java"; - } - } - return simulatorName; - } - /** * Set simulator name. * * @param simulatorName simulator name to set */ - public void setSimulatorName(String simulatorName) { - this.simulatorName = simulatorName; - } + public abstract void setSimulatorName(String simulatorName); /** * Get enabled result names list. * * @return enabled result names list */ - public Collection<String> getResultEnabled() { + public abstract Collection<String> getResultEnabled(); - if (resultEnabled == null) { - - resultEnabled = new LinkedList<String>(); - - if (propertiesParameters != null) { - String[] resultList = propertiesParameters.getProperty("resultNames", "").split(","); - for (String name : resultList) { - if (name != null && !"".equals(name)) { - resultEnabled.add(name); - } - } - } - } - return resultEnabled; - } - /** * Set enabled result names list. * * @param resultEnabled enabled result names list */ - public void setResultEnabled(Collection<String> resultEnabled) { - this.resultEnabled = resultEnabled; - } + public abstract void setResultEnabled(Collection<String> resultEnabled); /** * Get tag values. @@ -1335,33 +430,14 @@ * * @return Returns the tagValue. */ - public Map<String, String> getTagValue() { + public abstract Map<String, String> getTagValue(); - if (tagValue == null) { - tagValue = new LinkedHashMap<String, String>(); - - if (propertiesParameters != null) { - for (Object k : propertiesParameters.keySet()) { - if (k.toString().startsWith("tagValue.")) { - String key = k.toString().substring("tagValue.".length()); - String value = propertiesParameters.getProperty(k.toString()); - getTagValue().put(key, value); - } - } - } - } - - return tagValue; - } - /** * Set tag values. * * @param tagValue tagValues to set. */ - public void setTagValue(Map<String, String> tagValue) { - this.tagValue = tagValue; - } + public abstract void setTagValue(Map<String, String> tagValue); /** * Get simulator log level. @@ -1370,32 +446,14 @@ * * @return simualtor log level */ - public String getSimulLogLevel() { + public abstract String getSimulLogLevel(); - if (simulLogLevel == null) { - - if (propertiesParameters != null) { - simulLogLevel = propertiesParameters.getProperty("simulLogLevel", "info"); - } else { - simulLogLevel = "info"; - } - } - - return simulLogLevel; - } - /** * Set simulator log level. * * @param logLevel simulator log level */ - public void setSimulLogLevel(String logLevel) { - if (log.isDebugEnabled()) { - log.debug(_("isisfish.params.changeLogLev", simulLogLevel, - logLevel)); - } - this.simulLogLevel = logLevel; - } + public abstract void setSimulLogLevel(String logLevel); /** * Get script log level. @@ -1404,32 +462,14 @@ * * @return script log level */ - public String getScriptLogLevel() { + public abstract String getScriptLogLevel(); - if (scriptLogLevel == null) { - if (propertiesParameters != null) { - scriptLogLevel = propertiesParameters.getProperty( - "scriptLogLevel", "info"); - } else { - scriptLogLevel = "info"; - } - } - - return scriptLogLevel; - } - /** * Set script log level. * * @param logLevel script log level */ - public void setScriptLogLevel(String logLevel) { - if (log.isDebugEnabled()) { - log.debug(_("isisfish.params.changeLogLev", scriptLogLevel, - logLevel)); - } - this.scriptLogLevel = logLevel; - } + public abstract void setScriptLogLevel(String logLevel); /** * Get librairies log level. @@ -1438,78 +478,38 @@ * * @return librairies log level */ - public String getLibLogLevel() { - if (libLogLevel == null) { - if (propertiesParameters != null) { - libLogLevel = propertiesParameters.getProperty("libLogLevel", - "error"); - } else { - libLogLevel = "info"; - } - } + public abstract String getLibLogLevel(); - return libLogLevel; - } - /** * Set lib log level. * * @param logLevel */ - public void setLibLogLevel(String logLevel) { - if (log.isDebugEnabled()) { - log.debug(_("isisfish.params.changeLogLev", libLogLevel, logLevel)); - } - this.libLogLevel = logLevel; - } + public abstract void setLibLogLevel(String logLevel); - public boolean isSimulErrorLevel() { - return "error".equals(simulLogLevel); - } + public abstract boolean isSimulErrorLevel(); - public boolean isSimulWarnLevel() { - return "warn".equals(simulLogLevel); - } + public abstract boolean isSimulWarnLevel(); - public boolean isSimulInfoLevel() { - return "info".equals(simulLogLevel); - } + public abstract boolean isSimulInfoLevel(); - public boolean isSimulDebugLevel() { - return "debug".equals(simulLogLevel); - } + public abstract boolean isSimulDebugLevel(); - public boolean isScriptErrorLevel() { - return "error".equals(scriptLogLevel); - } + public abstract boolean isScriptErrorLevel(); - public boolean isScriptWarnLevel() { - return "warn".equals(scriptLogLevel); - } + public abstract boolean isScriptWarnLevel(); - public boolean isScriptInfoLevel() { - return "info".equals(scriptLogLevel); - } + public abstract boolean isScriptInfoLevel(); - public boolean isScriptDebugLevel() { - return "debug".equals(scriptLogLevel); - } + public abstract boolean isScriptDebugLevel(); - public boolean isLibErrorLevel() { - return "error".equals(libLogLevel); - } + public abstract boolean isLibErrorLevel(); - public boolean isLibWarnLevel() { - return "warn".equals(libLogLevel); - } + public abstract boolean isLibWarnLevel(); - public boolean isLibInfoLevel() { - return "info".equals(libLogLevel); - } + public abstract boolean isLibInfoLevel(); - public boolean isLibDebugLevel() { - return "debug".equals(libLogLevel); - } + public abstract boolean isLibDebugLevel(); /** * A copy instance of SimulationParameter. @@ -1519,63 +519,8 @@ * * @return a copy of this instance */ - public SimulationParameter copy() { - SimulationParameter result = new SimulationParameter(); + public abstract SimulationParameter copy(); - if (propertiesParameters != null) { - result.propertiesParameters = new SortedProperties(); - // I think that iteration work better than parameters in contructor - result.propertiesParameters.putAll(propertiesParameters); - } - - // still needed to be copied, if there is no propertiesParameters - result.isisFishVersion = getIsisFishVersion(); - result.description = getDescription(); - result.regionName = getRegionName(); - result.numberOfYear = getNumberOfYear(); - result.simulatorName = getSimulatorName(); - result.useOptimization = getUseOptimization(); - result.useStatistic = getUseStatistic(); - result.usePreScript = getUsePreScript(); - result.preScript = getPreScript(); - result.useAnalysePlan = getUseAnalysePlan(); - result.analysePlanNumber = getAnalysePlanNumber(); - if (exportNames != null) { - result.exportNames = new LinkedList<String>(exportNames); - } - if (strategies != null) { - result.strategies = new LinkedList<Strategy>(strategies); - } - if (populations != null) { - result.populations = new LinkedList<Population>(populations); - } - if (rules != null) { - result.rules = new LinkedList<Rule>(rules); - } - if (analysePlans != null) { - result.analysePlans = new LinkedList<AnalysePlan>(analysePlans); - } - if (resultEnabled != null) { - result.resultEnabled = new LinkedList<String>(resultEnabled); - } - if (numbers != null) { - result.numbers = new HashMap<Population, MatrixND>(numbers); - } - if (tagValue != null) { - result.tagValue = new HashMap<String, String>(tagValue); - } - result.simulLogLevel = getSimulLogLevel(); - result.scriptLogLevel = getScriptLogLevel(); - result.libLogLevel = getLibLogLevel(); - result.numberOfSensitivitySimulation = getNumberOfSensitivitySimulation(); - if (sensitivityExports != null) { - result.sensitivityExports = new LinkedList<SensitivityExport>(sensitivityExports); - } - result.sensitivityCalculator = sensitivityCalculator; - - return result; - } - /** * Make a deep copy of current parameters. * @@ -1584,112 +529,15 @@ * * @return new parameters instance */ - public SimulationParameter deepCopy() { - Properties props = toProperties(); - SimulationParameter newInstance = new SimulationParameter(); - newInstance.fromProperties(props); - return newInstance; - } + public abstract SimulationParameter deepCopy(); /** * The toString() method call getters. * * So make instances of rules/export/plans... */ - @Override - public String toString() { - StringBuffer result = new StringBuffer(); - result.append( - _("isisfish.params.toString.simulation.done", - getIsisFishVersion())).append('\n'); - result.append("--------------------\n"); - result.append(getDescription()).append('\n'); - result.append("--------------------\n"); + public abstract String toString(); - if (getUseAnalysePlan()) { - result.append(_("isisfish.params.toString.plan.number", - getAnalysePlanNumber())); - } - - RegionStorage region = getRegion(); - result.append(_("isisfish.params.toString.fishery", region.getName())); - result.append(_("isisfish.params.toString.number.years", - getNumberOfYear())); - - // startegies - List<Strategy> strs = getStrategies(); - result.append(_("isisfish.params.toString.strategies")); - String sep = ""; - for (Strategy str : strs) { - result.append(sep).append(str.getName()); - sep = ","; - } - result.append("\n\n"); - - // populations - result.append(_("isisfish.params.toString.populations")); - sep = ""; - for (Population pop : getPopulations()) { - result.append(sep).append(pop.getName()); - sep = ","; - } - result.append("\n\n"); - - // rules - for (Rule rule : getRules()) { - String name = RuleStorage.getName(rule); - String param = ""; - try { - param = RuleStorage.getParamAsString(rule); - } catch (IsisFishException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't convert rule parameter to string for " - + name, eee); - } - } - result.append(_("isisfish.params.toString.rule", name)); - result.append('\n'); - result.append(param); - result.append("\n"); - - } - result.append("\n\n"); - - // analyse plans - for (AnalysePlan plan : getAnalysePlans()) { - String name = RuleStorage.getName(plan); - String param = ""; - try { - param = AnalysePlanStorage.getParamAsString(plan); - } catch (IsisFishException eee) { - if (log.isWarnEnabled()) { - log.warn("Can't convert plan parameter to string for " - + name, eee); - } - } - result.append(_("isisfish.params.toString.plan", name)); - result.append('\n'); - result.append(param); - result.append('\n'); - - } - result.append('\n'); - result.append(_("isisfish.params.toString.script.presimulation")) - .append(":\n"); - result.append(getPreScript()); - result.append('\n'); - result.append(_("isisfish.params.toString.simul.logger.level", - simulLogLevel)); - result.append('\n'); - result.append(_("isisfish.params.toString.script.logger.level", - scriptLogLevel)); - result.append('\n'); - result.append(_("isisfish.params.toString.lib.logger.level", - libLogLevel)); - result.append('\n'); - return result.toString(); - } - /** * Permet de convertir l'objet SimulationParameter en un objet Properties * Cela permet de le stocker facilement sur le disque. @@ -1706,195 +554,15 @@ * @return L'objet Properties representant les parametres * @see #fromProperties(File, Properties) */ - public Properties toProperties() { - Properties result = new SortedProperties(); + public abstract Properties toProperties(); - result.setProperty("isisFishVersion", getIsisFishVersion()); - result.setProperty("description", getDescription()); - result.setProperty("regionName", getRegionName()); - result.setProperty("numberOfYear", String.valueOf(getNumberOfYear())); - result.setProperty("simulatorName", getSimulatorName()); - result.setProperty("useOptimization", String.valueOf(getUseOptimization())); - result.setProperty("useStatistic", String.valueOf(getUseStatistic())); - - // strategies - if (strategies != null) { - String strategyList = ""; - for (Strategy str : getStrategies()) { - strategyList += str.getName() + ","; - } - result.setProperty("strategies", StringUtil.substring(strategyList, 0, -1)); - } else { - if (propertiesParameters != null - && propertiesParameters.containsKey("strategies")) { - result.setProperty("strategies", propertiesParameters.getProperty("strategies")); - } - } - - // populations - if (populations != null) { - String populationList = ""; - for (Population pop : getPopulations()) { - populationList += pop.getName() + ","; - MatrixND number = getNumberOf(pop); - String numberAsString = String.valueOf(number.toList()); - result.setProperty("population." + pop.getName() + ".number", numberAsString); - } - result.setProperty("populations", StringUtil.substring( - populationList, 0, -1)); - } else { - if (propertiesParameters != null - && propertiesParameters.containsKey("populations")) { - result.setProperty("populations", propertiesParameters.getProperty("populations")); - for (String key : propertiesParameters.stringPropertyNames()) { - if (key.startsWith("population.")) { - result.setProperty(key, propertiesParameters.getProperty(key)); - } - } - } - } - - // rules - if (rules != null) { - String ruleList = ""; - int ruleIndex = 0; - for (Rule rule : getRules()) { - ruleList += RuleStorage.getName(rule) + ","; - Properties ruleProp = ruleParametertoProperties(ruleIndex++, rule); - result.putAll(ruleProp); - } - result.setProperty("rules", ruleList); - } else { - if (propertiesParameters != null - && propertiesParameters.containsKey("rules")) { - result.setProperty("rules", propertiesParameters - .getProperty("rules")); - for (String key : propertiesParameters.stringPropertyNames()) { - if (key.startsWith("rule.")) { - result.setProperty(key, propertiesParameters - .getProperty(key)); - } - } - } - } - - // anaylyse plans - if (analysePlans != null) { - String planList = ""; - int planIndex = 0; - for (AnalysePlan plan : getAnalysePlans()) { - planList += AnalysePlanStorage.getName(plan) + ","; - Properties planProp = planParametertoProperties(planIndex++, plan); - result.putAll(planProp); - } - result.setProperty("plans", planList); - } else { - if (propertiesParameters != null - && propertiesParameters.containsKey("plans")) { - result.setProperty("plans", propertiesParameters - .getProperty("plans")); - for (String key : propertiesParameters.stringPropertyNames()) { - if (key.startsWith("plan.")) { - result.setProperty(key, propertiesParameters.getProperty(key)); - } - } - } - } - - // export names - String exportList = ""; - for (String export : getExportNames()) { - exportList += export + ","; - - } - result.setProperty("exports", exportList); - - // number of sensitivity simulation - result.setProperty("numberOfSensitivitySimulation", String - .valueOf(getNumberOfSensitivitySimulation())); - - // calculator name - if (sensitivityCalculator != null) { - String calculatorName = SensitivityStorage - .getName(getSensitivityCalculator()); - result.setProperty("sensitivitycalculator", calculatorName); - - // calculator parameter - Properties calculatorParams = sensitivityCalculatorParametertoProperties( - 0, getSensitivityCalculator()); - result.putAll(calculatorParams); - } else { - if (propertiesParameters != null - && propertiesParameters.containsKey("sensitivitycalculator")) { - result.setProperty("sensitivitycalculator", - propertiesParameters.getProperty("sensitivitycalculator")); - for (String key : propertiesParameters.stringPropertyNames()) { - if (key.startsWith("sensitivity.")) { - result.setProperty(key, propertiesParameters.getProperty(key)); - } - } - } - } - - // sensitivity exports - if (sensitivityExports != null) { - String sensitivityExportList = ""; - int sensitivityExportIndex = 0; - for (SensitivityExport sensitivityExport : getSensitivityExport()) { - sensitivityExportList += SensitivityExportStorage - .getName(sensitivityExport) + ","; - Properties exportProp = sensitivityExportParametertoProperties( - sensitivityExportIndex++, sensitivityExport); - result.putAll(exportProp); - } - result.setProperty("sensitivityexports", sensitivityExportList); - } else { - if (propertiesParameters != null - && propertiesParameters.containsKey("sensitivityexports")) { - result.setProperty("sensitivityexports", propertiesParameters - .getProperty("sensitivityexports")); - for (String key : propertiesParameters.stringPropertyNames()) { - if (key.startsWith("sensitivityexport.")) { - result.setProperty(key, propertiesParameters.getProperty(key)); - } - } - } - } - - result.setProperty("usePreScript", String.valueOf(getUsePreScript())); - result.setProperty("preScript", getPreScript()); - result.setProperty("useAnalysePlan", String.valueOf(getUseAnalysePlan())); - result.setProperty("analysePlanNumber", String.valueOf(getAnalysePlanNumber())); - - String resultList = ""; - for (String r : getResultEnabled()) { - resultList += r + ","; - } - result.setProperty("resultNames", resultList); - - for (Map.Entry<String, String> e : getTagValue().entrySet()) { - result.setProperty("tagValue." + e.getKey(), e.getValue()); - } - - result.setProperty("simulLogLevel", getSimulLogLevel()); - result.setProperty("scriptLogLevel", getScriptLogLevel()); - result.setProperty("libLogLevel", getLibLogLevel()); - return result; - } - /** * Load properties from file. * * @param props property to read */ - public void fromProperties(Properties props) { + public abstract void fromProperties(Properties props); - // save properties (use full to read again parameter) - // for exports, or rules.... - this.propertiesParameters = props; - - } - /** * Reload parameters du to context change. * @@ -1904,59 +572,6 @@ * * @throws TopiaException */ - public void reloadContextParameters() throws TopiaException { + public abstract void reloadContextParameters() throws TopiaException; - // On verifie tout d'abord que l'on ai pas dans une simulation - // si on y es, on utilise le context static non null du thread local - // Resoud les lazy exceptions des parametres des regles - boolean mustClose = false; - TopiaContext tx = SimulationContext.get().getDB(); - - if (tx == null) { - // not in simulation, create transaction - tx = getRegion().getStorage().beginTransaction(); - mustClose = true; - } - - // reload rules - if (log.isDebugEnabled()) { - log.debug("Reloading rules"); - } - for (Rule rule : getRules()) { - try { - for (Field field : rule.getClass().getFields()) { - // le champ ne doit pas être privé - if (Modifier.isPublic(field.getModifiers())) { - // si le type est topia entity (ou sous classe) - if (TopiaEntity.class.isAssignableFrom(field.getType())) { - TopiaEntity entity = (TopiaEntity) field.get(rule); - // il est possible que les parametres soient null - // dans ce cas, il ne faut pas essayer de les recharger - if (entity != null) { - // reloading - TopiaEntity newEntity = tx.findByTopiaId(entity - .getTopiaId()); - field.set(rule, newEntity); - } - } - } - } - } catch (IllegalArgumentException e) { - if (log.isErrorEnabled()) { - log.error("Can't refresh rule field", e); - } - } catch (IllegalAccessException e) { - if (log.isErrorEnabled()) { - log.error("Can't access rule field", e); - } - } - } - - // si la transaction a été ouverte (pas dans une simulation) - // on la referme - if (mustClose) { - tx.commitTransaction(); - tx.closeContext(); - } - } -} +} \ No newline at end of file

1 0

r3034 - in isis-fish/trunk/src: main/java/fr/ifremer/isisfish/actions main/java/fr/ifremer/isisfish/datastore main/java/fr/ifremer/isisfish/simulator main/java/fr/ifremer/isisfish/simulator/launcher main/java/fr/ifremer/isisfish/ui/simulator test/java/fr/ifremer/isisfish/simulator test/java/fr/ifremer/isisfish/simulator/launcher
by chatellier＠users.labs.libre-entreprise.org April 29, 2010

April 29, 2010

Author: chatellier Date: 2010-04-29 16:14:25 +0000 (Thu, 29 Apr 2010) New Revision: 3034 Log: Add simulation cache to not keep all simulation huge prescript in memory. Added: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterCache.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterImpl.java Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/actions/SimulationAction.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/SimulationStorage.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/SimulationParameterTest.java isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/SimulationPreScriptTest.java isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitorTest.java isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SimulationServiceTest.java Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/actions/SimulationAction.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/actions/SimulationAction.java 2010-04-29 13:16:36 UTC (rev 3033) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/actions/SimulationAction.java 2010-04-29 16:14:25 UTC (rev 3034) @@ -27,9 +27,9 @@ import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; +import org.nuiton.util.ApplicationConfig.Action.Step; import org.nuiton.util.FileUtil; import org.nuiton.util.ZipUtil; -import org.nuiton.util.ApplicationConfig.Action.Step; import fr.ifremer.isisfish.IsisConfig; import fr.ifremer.isisfish.IsisFish; @@ -37,6 +37,7 @@ import fr.ifremer.isisfish.datastore.SimulationStorage; import fr.ifremer.isisfish.simulator.SimulationControl; import fr.ifremer.isisfish.simulator.SimulationParameter; +import fr.ifremer.isisfish.simulator.SimulationParameterImpl; import fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher; import fr.ifremer.isisfish.simulator.launcher.SimulationItem; import fr.ifremer.isisfish.simulator.launcher.SimulationService; @@ -80,7 +81,7 @@ inStream.close(); } - SimulationParameter params = new SimulationParameter(); + SimulationParameter params = new SimulationParameterImpl(); params.fromProperties(props); // try to import region if needed Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/SimulationStorage.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/SimulationStorage.java 2010-04-29 13:16:36 UTC (rev 3033) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/SimulationStorage.java 2010-04-29 16:14:25 UTC (rev 3034) @@ -46,6 +46,7 @@ import fr.ifremer.isisfish.logging.SimulationLoggerUtil; import fr.ifremer.isisfish.simulator.SimulationControl; import fr.ifremer.isisfish.simulator.SimulationParameter; +import fr.ifremer.isisfish.simulator.SimulationParameterImpl; import fr.ifremer.isisfish.vcs.VCSException; /** @@ -352,7 +353,7 @@ FileInputStream in = new FileInputStream(file); prop.load(in); in.close(); - parameter = new SimulationParameter(); + parameter = new SimulationParameterImpl(); parameter.fromProperties(prop); } catch (IOException eee) { throw new IsisFishRuntimeException(_( @@ -382,7 +383,7 @@ FileInputStream in = new FileInputStream(file); prop.load(in); in.close(); - parameter = new SimulationParameter(); + parameter = new SimulationParameterImpl(); parameter.fromProperties(prop); } catch (IOException eee) { throw new IsisFishRuntimeException(_( Added: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterCache.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterCache.java (rev 0) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterCache.java 2010-04-29 16:14:25 UTC (rev 3034) @@ -0,0 +1,876 @@ +/* *##% + * Copyright (C) 2010 Code Lutin, Benjamin Poussin, Chatellier Eric + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program; if not, write to the Free Software + * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. + *##%*/ + +package fr.ifremer.isisfish.simulator; + +import java.io.BufferedReader; +import java.io.BufferedWriter; +import java.io.File; +import java.io.FileReader; +import java.io.FileWriter; +import java.io.IOException; +import java.io.Reader; +import java.io.Writer; +import java.lang.ref.SoftReference; +import java.util.Collection; +import java.util.List; +import java.util.Map; +import java.util.Properties; + +import org.apache.commons.io.IOUtils; +import org.nuiton.math.matrix.MatrixND; +import org.nuiton.topia.TopiaException; + +import fr.ifremer.isisfish.IsisFishRuntimeException; +import fr.ifremer.isisfish.datastore.RegionStorage; +import fr.ifremer.isisfish.entities.Population; +import fr.ifremer.isisfish.entities.Strategy; +import fr.ifremer.isisfish.export.SensitivityExport; +import fr.ifremer.isisfish.rule.Rule; +import fr.ifremer.isisfish.simulator.sensitivity.SensitivityCalculator; + +/** + * TODO add comment here. + * + * @author chatellier + * @version $Revision$ + * + * Last update : $Date$ + * By : $Author$ + */ +public class SimulationParameterCache implements SimulationParameter { + + protected File paramFile; + protected SoftReference<SimulationParameter> ref; + + /** + * + * @param param param to cache + */ + public SimulationParameterCache(SimulationParameter param) { + + try { + paramFile = File.createTempFile("isis-fish-param", ".properties"); + paramFile.deleteOnExit(); + store(param); + } + catch (IOException eee) { + throw new IsisFishRuntimeException("Can't cache param to disk", eee); + } + + ref = new SoftReference<SimulationParameter>(param); + } + + protected void store(SimulationParameter param) { + Properties prop = param.toProperties(); + Writer writer = null; + try { + writer = new BufferedWriter(new FileWriter(paramFile)); + prop.store(writer, "Parameter cache"); + } + catch (IOException eee) { + throw new IsisFishRuntimeException("Can't cache param to disk", eee); + } + finally { + IOUtils.closeQuietly(writer); + } + } + + protected SimulationParameter getParam() { + SimulationParameter result = ref.get(); + if (result == null) { + + Reader reader = null; + try { + reader = new BufferedReader(new FileReader(paramFile)); + Properties prop = new Properties(); + prop.load(reader); + result = new SimulationParameterImpl(); + result.fromProperties(prop); + ref = new SoftReference<SimulationParameter>(result); + } + catch (IOException eee) { + throw new IsisFishRuntimeException("Can't cache param to disk", eee); + } + finally { + IOUtils.closeQuietly(reader); + } + + } + return result; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#check() + */ + @Override + public List<String> check() { + SimulationParameter param = getParam(); + return param.check(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getIsisFishVersion() + */ + @Override + public String getIsisFishVersion() { + SimulationParameter param = getParam(); + return param.getIsisFishVersion(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setIsisFishVersion(java.lang.String) + */ + @Override + public void setIsisFishVersion(String isisFishVersion) { + SimulationParameter param = getParam(); + param.setIsisFishVersion(isisFishVersion); + store(param); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getDescription() + */ + @Override + public String getDescription() { + SimulationParameter param = getParam(); + return param.getDescription(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setDescription(java.lang.String) + */ + @Override + public void setDescription(String description) { + SimulationParameter param = getParam(); + param.setDescription(description); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getRegion() + */ + @Override + public RegionStorage getRegion() { + SimulationParameter param = getParam(); + return param.getRegion(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getNumberOf(fr.ifremer.isisfish.entities.Population) + */ + @Override + public MatrixND getNumberOf(Population pop) { + SimulationParameter param = getParam(); + return param.getNumberOf(pop); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getExtraRules() + */ + @Override + public List<String> getExtraRules() { + SimulationParameter param = getParam(); + return param.getExtraRules(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#addExtraRules(java.lang.String[]) + */ + @Override + public void addExtraRules(String... extraRules) { + SimulationParameter param = getParam(); + param.addExtraRules(extraRules); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getPopulations() + */ + @Override + public List<Population> getPopulations() { + SimulationParameter param = getParam(); + return param.getPopulations(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setPopulations(java.util.List) + */ + @Override + public void setPopulations(List<Population> populations) { + SimulationParameter param = getParam(); + param.setPopulations(populations); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getStrategies() + */ + @Override + public List<Strategy> getStrategies() { + SimulationParameter param = getParam(); + return param.getStrategies(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setStrategies(java.util.List) + */ + @Override + public void setStrategies(List<Strategy> strategies) { + SimulationParameter param = getParam(); + param.setStrategies(strategies); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#addAnalysePlan(fr.ifremer.isisfish.simulator.AnalysePlan) + */ + @Override + public void addAnalysePlan(AnalysePlan plan) { + SimulationParameter param = getParam(); + param.addAnalysePlan(plan); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#removeAnalysePlan(fr.ifremer.isisfish.simulator.AnalysePlan) + */ + @Override + public boolean removeAnalysePlan(AnalysePlan plan) { + SimulationParameter param = getParam(); + boolean result = param.removeAnalysePlan(plan); + store(param); + return result; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getAnalysePlans() + */ + @Override + public List<AnalysePlan> getAnalysePlans() { + SimulationParameter param = getParam(); + return param.getAnalysePlans(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setAnalysePlans(java.util.List) + */ + @Override + public void setAnalysePlans(List<AnalysePlan> plans) { + SimulationParameter param = getParam(); + param.setAnalysePlans(plans); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isIndependentPlan() + */ + @Override + public boolean isIndependentPlan() { + SimulationParameter param = getParam(); + return param.isIndependentPlan(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#clearPlans() + */ + @Override + public void clearPlans() { + SimulationParameter param = getParam(); + param.clearPlans(); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#addRule(fr.ifremer.isisfish.rule.Rule) + */ + @Override + public void addRule(Rule rule) { + SimulationParameter param = getParam(); + param.addRule(rule); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#removeRule(fr.ifremer.isisfish.rule.Rule) + */ + @Override + public boolean removeRule(Rule rule) { + SimulationParameter param = getParam(); + boolean result = param.removeRule(rule); + store(param); + return result; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getRules() + */ + @Override + public List<Rule> getRules() { + SimulationParameter param = getParam(); + return param.getRules(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setRules(java.util.List) + */ + @Override + public void setRules(List<Rule> rules) { + SimulationParameter param = getParam(); + param.setRules(rules); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#clearRules() + */ + @Override + public void clearRules() { + SimulationParameter param = getParam(); + param.clearRules(); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getUseOptimization() + */ + @Override + public boolean getUseOptimization() { + SimulationParameter param = getParam(); + return param.getUseOptimization(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setUseOptimization(boolean) + */ + @Override + public void setUseOptimization(boolean useOptimization) { + SimulationParameter param = getParam(); + param.setUseOptimization(useOptimization); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getUseStatistic() + */ + @Override + public boolean getUseStatistic() { + SimulationParameter param = getParam(); + return param.getUseStatistic(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setUseStatistic(boolean) + */ + @Override + public void setUseStatistic(boolean useStatistic) { + SimulationParameter param = getParam(); + param.setUseStatistic(useStatistic); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getExportNames() + */ + @Override + public List<String> getExportNames() { + SimulationParameter param = getParam(); + return param.getExportNames(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setExportNames(java.util.List) + */ + @Override + public void setExportNames(List<String> exportNames) { + SimulationParameter param = getParam(); + param.setExportNames(exportNames); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getNumberOfSensitivitySimulation() + */ + @Override + public int getNumberOfSensitivitySimulation() { + SimulationParameter param = getParam(); + return param.getNumberOfSensitivitySimulation(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setNumberOfSensitivitySimulation(int) + */ + @Override + public void setNumberOfSensitivitySimulation( + int numberOfSensitivitySimulation) { + SimulationParameter param = getParam(); + param.setNumberOfSensitivitySimulation(numberOfSensitivitySimulation); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getSensitivityCalculator() + */ + @Override + public SensitivityCalculator getSensitivityCalculator() { + SimulationParameter param = getParam(); + return param.getSensitivityCalculator(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setSensitivityCalculator(fr.ifremer.isisfish.simulator.sensitivity.SensitivityCalculator) + */ + @Override + public void setSensitivityCalculator( + SensitivityCalculator sensitivityCalculator) { + SimulationParameter param = getParam(); + param.setSensitivityCalculator(sensitivityCalculator); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getSensitivityExport() + */ + @Override + public List<SensitivityExport> getSensitivityExport() { + SimulationParameter param = getParam(); + return param.getSensitivityExport(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setSensitivityExport(java.util.List) + */ + @Override + public void setSensitivityExport(List<SensitivityExport> sensitivityExport) { + SimulationParameter param = getParam(); + param.setSensitivityExport(sensitivityExport); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getUseAnalysePlan() + */ + @Override + public boolean getUseAnalysePlan() { + SimulationParameter param = getParam(); + return param.getUseAnalysePlan(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setUseAnalysePlan(boolean) + */ + @Override + public void setUseAnalysePlan(boolean useAnalysePlan) { + SimulationParameter param = getParam(); + param.setUseAnalysePlan(useAnalysePlan); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getAnalysePlanNumber() + */ + @Override + public int getAnalysePlanNumber() { + SimulationParameter param = getParam(); + return param.getAnalysePlanNumber(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setAnalysePlanNumber(int) + */ + @Override + public void setAnalysePlanNumber(int analysePlanNumber) { + SimulationParameter param = getParam(); + param.setAnalysePlanNumber(analysePlanNumber); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getNumberOfYear() + */ + @Override + public int getNumberOfYear() { + SimulationParameter param = getParam(); + return param.getNumberOfYear(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setNumberOfYear(int) + */ + @Override + public void setNumberOfYear(int numberOfYear) { + SimulationParameter param = getParam(); + param.setNumberOfYear(numberOfYear); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getUsePreScript() + */ + @Override + public boolean getUsePreScript() { + SimulationParameter param = getParam(); + return param.getUsePreScript(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setUsePreScript(boolean) + */ + @Override + public void setUsePreScript(boolean usePreScript) { + SimulationParameter param = getParam(); + param.setUsePreScript(usePreScript); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getPreScript() + */ + @Override + public String getPreScript() { + SimulationParameter param = getParam(); + return param.getPreScript(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setPreScript(java.lang.String) + */ + @Override + public void setPreScript(String preScript) { + SimulationParameter param = getParam(); + param.setPreScript(preScript); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getRegionName() + */ + @Override + public String getRegionName() { + SimulationParameter param = getParam(); + return param.getRegionName(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setRegionName(java.lang.String) + */ + @Override + public void setRegionName(String regionName) { + SimulationParameter param = getParam(); + param.setRegionName(regionName); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getSimulatorName() + */ + @Override + public String getSimulatorName() { + SimulationParameter param = getParam(); + return param.getSimulatorName(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setSimulatorName(java.lang.String) + */ + @Override + public void setSimulatorName(String simulatorName) { + SimulationParameter param = getParam(); + param.setSimulatorName(simulatorName); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getResultEnabled() + */ + @Override + public Collection<String> getResultEnabled() { + SimulationParameter param = getParam(); + return param.getResultEnabled(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setResultEnabled(java.util.Collection) + */ + @Override + public void setResultEnabled(Collection<String> resultEnabled) { + SimulationParameter param = getParam(); + param.setResultEnabled(resultEnabled); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getTagValue() + */ + @Override + public Map<String, String> getTagValue() { + SimulationParameter param = getParam(); + return param.getTagValue(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setTagValue(java.util.Map) + */ + @Override + public void setTagValue(Map<String, String> tagValue) { + SimulationParameter param = getParam(); + param.setTagValue(tagValue); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getSimulLogLevel() + */ + @Override + public String getSimulLogLevel() { + SimulationParameter param = getParam(); + return param.getSimulLogLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setSimulLogLevel(java.lang.String) + */ + @Override + public void setSimulLogLevel(String logLevel) { + SimulationParameter param = getParam(); + param.setSimulLogLevel(logLevel); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getScriptLogLevel() + */ + @Override + public String getScriptLogLevel() { + SimulationParameter param = getParam(); + return param.getScriptLogLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setScriptLogLevel(java.lang.String) + */ + @Override + public void setScriptLogLevel(String logLevel) { + SimulationParameter param = getParam(); + param.setScriptLogLevel(logLevel); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#getLibLogLevel() + */ + @Override + public String getLibLogLevel() { + SimulationParameter param = getParam(); + return param.getLibLogLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#setLibLogLevel(java.lang.String) + */ + @Override + public void setLibLogLevel(String logLevel) { + SimulationParameter param = getParam(); + param.setLibLogLevel(logLevel); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isSimulErrorLevel() + */ + @Override + public boolean isSimulErrorLevel() { + SimulationParameter param = getParam(); + return param.isSimulErrorLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isSimulWarnLevel() + */ + @Override + public boolean isSimulWarnLevel() { + SimulationParameter param = getParam(); + return param.isSimulErrorLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isSimulInfoLevel() + */ + @Override + public boolean isSimulInfoLevel() { + SimulationParameter param = getParam(); + return param.isScriptInfoLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isSimulDebugLevel() + */ + @Override + public boolean isSimulDebugLevel() { + SimulationParameter param = getParam(); + return param.isSimulDebugLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isScriptErrorLevel() + */ + @Override + public boolean isScriptErrorLevel() { + SimulationParameter param = getParam(); + return param.isScriptErrorLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isScriptWarnLevel() + */ + @Override + public boolean isScriptWarnLevel() { + SimulationParameter param = getParam(); + return param.isScriptWarnLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isScriptInfoLevel() + */ + @Override + public boolean isScriptInfoLevel() { + SimulationParameter param = getParam(); + return param.isScriptInfoLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isScriptDebugLevel() + */ + @Override + public boolean isScriptDebugLevel() { + SimulationParameter param = getParam(); + return param.isScriptDebugLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isLibErrorLevel() + */ + @Override + public boolean isLibErrorLevel() { + SimulationParameter param = getParam(); + return param.isLibErrorLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isLibWarnLevel() + */ + @Override + public boolean isLibWarnLevel() { + SimulationParameter param = getParam(); + return param.isLibWarnLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isLibInfoLevel() + */ + @Override + public boolean isLibInfoLevel() { + SimulationParameter param = getParam(); + return param.isLibInfoLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#isLibDebugLevel() + */ + @Override + public boolean isLibDebugLevel() { + SimulationParameter param = getParam(); + return param.isLibDebugLevel(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#copy() + */ + @Override + public SimulationParameter copy() { + SimulationParameter param = getParam(); + return param.copy(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#deepCopy() + */ + @Override + public SimulationParameter deepCopy() { + SimulationParameter param = getParam(); + return param.deepCopy(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#toProperties() + */ + @Override + public Properties toProperties() { + SimulationParameter param = getParam(); + return param.toProperties(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#fromProperties(java.util.Properties) + */ + @Override + public void fromProperties(Properties props) { + SimulationParameter param = getParam(); + param.fromProperties(props); + store(param); + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter#reloadContextParameters() + */ + @Override + public void reloadContextParameters() throws TopiaException { + SimulationParameter param = getParam(); + param.reloadContextParameters(); + store(param); + } +} Property changes on: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterCache.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Copied: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterImpl.java (from rev 3019, isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java) =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterImpl.java (rev 0) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameterImpl.java 2010-04-29 16:14:25 UTC (rev 3034) @@ -0,0 +1,1904 @@ +/* *##% + * Copyright (C) 2006 - 2010 Ifremer, Code Lutin, Cédric Pineau, Benjamin Poussin + * + * This program is free software; you can redistribute it and/or modify it under + * the terms of the GNU General Public License as published by the Free Software + * Foundation; either version 2 of the License, or (at your option) any later + * version. + * + * This program is distributed in the hope that it will be useful, but WITHOUT + * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS + * FOR A PARTICULAR PURPOSE. See the GNU General Public License for more + * details. + * + * You should have received a copy of the GNU General Public License along with + * this program; if not, write to the Free Software Foundation, Inc., 59 Temple + * Place - Suite 330, Boston, MA 02111-1307, USA. ##% + */ + +package fr.ifremer.isisfish.simulator; + +import static org.nuiton.i18n.I18n._; + +import java.io.File; +import java.lang.reflect.Field; +import java.lang.reflect.Modifier; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collection; +import java.util.HashMap; +import java.util.LinkedHashMap; +import java.util.LinkedList; +import java.util.List; +import java.util.Map; +import java.util.Properties; + +import org.apache.commons.beanutils.ConvertUtilsBean; +import org.apache.commons.lang.StringUtils; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.nuiton.math.matrix.MatrixFactory; +import org.nuiton.math.matrix.MatrixHelper; +import org.nuiton.math.matrix.MatrixND; +import org.nuiton.topia.TopiaContext; +import org.nuiton.topia.TopiaException; +import org.nuiton.topia.persistence.TopiaEntity; +import org.nuiton.util.SortedProperties; +import org.nuiton.util.StringUtil; + +import fr.ifremer.isisfish.IsisConfig; +import fr.ifremer.isisfish.IsisFishDAOHelper; +import fr.ifremer.isisfish.IsisFishException; +import fr.ifremer.isisfish.datastore.AnalysePlanStorage; +import fr.ifremer.isisfish.datastore.RegionStorage; +import fr.ifremer.isisfish.datastore.RuleStorage; +import fr.ifremer.isisfish.datastore.SensitivityExportStorage; +import fr.ifremer.isisfish.datastore.SensitivityStorage; +import fr.ifremer.isisfish.entities.Population; +import fr.ifremer.isisfish.entities.PopulationDAO; +import fr.ifremer.isisfish.entities.Strategy; +import fr.ifremer.isisfish.entities.StrategyDAO; +import fr.ifremer.isisfish.export.ExportHelper; +import fr.ifremer.isisfish.export.SensitivityExport; +import fr.ifremer.isisfish.rule.Rule; +import fr.ifremer.isisfish.rule.RuleHelper; +import fr.ifremer.isisfish.simulator.sensitivity.SensitivityCalculator; +import fr.ifremer.isisfish.util.ConverterUtil; + +/** + * Contains all parameters for one simulation. + * + * {@link SimulationParameter} must now be loaded from a {@link Properties} + * object. + * {@link #toProperties()} method, now return a new {@link Properties} object + * filled with : + * <ul> + * <li>non modified original properties + * <li>new properties if some objects has been instantiated by getters(). + * </ul> + * + * Created: 10 janv. 2006 17:03:37 + * + * @author poussin + * @author chatellier + * + * @version $Revision$ + * + * Last update: $Date$ + * By : $Author$ + */ +public class SimulationParameterImpl implements SimulationParameter { + + /** Logger for this class. */ + private static Log log = LogFactory.getLog(SimulationParameter.class); + + /** Remember last read properties. */ + protected Properties propertiesParameters; + + /** + * Isis-fish version that permit to do the simulation. + * Must be set just before simulation by simulator. + */ + protected String isisFishVersion; + + /** Description de la simulation. */ + protected String description; + + /** Nom de la region sur lequel on simule. */ + protected String regionName; + + /** Nombre d'année sur lequel on souhaite simuler. */ + protected Integer numberOfYear; + + /** Le nom de l'objet script a utiliser pour faire la simulation. */ + protected String simulatorName; + + /** Utilisation ou non des optimisations. */ + protected Boolean useOptimization; + + /** Utilisation ou non des statistiques. */ + protected Boolean useStatistic; + + /** La liste des strategies a utiliser pour la simulation. */ + protected List<Strategy> strategies; + + /** La liste des populations a utiliser pour la simulation. */ + protected List<Population> populations; + + /** Les effectifs initiaux des différentes population. */ + protected Map<Population, MatrixND> numbers; + + /** La liste des regles de gestions a utiliser pour la simulation. */ + protected List<Rule> rules; + + /** La liste des regles potentiellement ajoutée par les plans d'analyse. */ + protected List<String> extraRules; + + /** La liste des plans a utiliser pour la simulation. */ + protected List<AnalysePlan> analysePlans; + + /** Ma liste des exports automatique a faire en fin de simulation. */ + protected List<String> exportNames; + + /** Utilisation du script de pre simulation. */ + protected Boolean usePreScript; + + /** Le script de pre simulation a utiliser. */ + protected String preScript; + + /** Utilisation du plan d'analyse. */ + protected Boolean useAnalysePlan; + + /** + * Le numero de sequence de la liste des plans d'analyse. Le premier + * élement du plan doit etre 0. Si la simulation ne fait pas partie d'un + * plan la valeur est -1. */ + protected Integer analysePlanNumber; + + /** Export utilisés pour les analyses de sensibilités. */ + protected List<SensitivityExport> sensitivityExports; + + /** + * Nombre de simulation constituant l'analyse de sensibilité. + * + * FIXME ce parametre ne devrait pas ce trouver à cet endroit. + * Ce n'est pas un parametres, mais une infos de simulation. + * Cela permet de savoir combien de simulation il y a au total + * pour savoir quand elle sont terminées. + */ + protected Integer numberOfSensitivitySimulation; + + /** Export utilisés pour les analyses de sensibilités. */ + protected SensitivityCalculator sensitivityCalculator; + + /** La liste des resultats qui nous interesse. */ + protected Collection<String> resultEnabled; + + /** Autre parametre defini par l'utilisateur. */ + protected Map<String, String> tagValue; + + /** + * Si vrai seul les exports automatiques ne sont souhaiter, la simulation + * pourrait etre supprimée a la fin. + */ + protected Boolean onlyExport; + + /** Le niveau de log du simulateur à utiliser pendant la simulation. Par defaut info. */ + protected String simulLogLevel = "info"; + /** Le niveau de log des scripts à utiliser pendant la simulation. Par defaut info. */ + protected String scriptLogLevel = "info"; + /** Le niveau de log des librairies à utiliser pendant la simulation. Par defaut error. */ + protected String libLogLevel = "error"; + + /** La region corespondant au parametre {@link #regionName}. */ + protected transient RegionStorage region; + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#check() + */ + @Override + public List<String> check() { + List<String> result = new ArrayList<String>(); + // TODO faire la verif et pour chaque erreur mettre un message + // dans la liste result (par exemple si pas d'effectif + // pour une pop + return result; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getIsisFishVersion() + */ + @Override + public String getIsisFishVersion() { + // if not already set + if (isisFishVersion == null) { + if (propertiesParameters != null) { + isisFishVersion = propertiesParameters.getProperty("isisFishVersion", ""); + } else { + // default value + isisFishVersion = IsisConfig.getVersion(); + } + } + return isisFishVersion; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setIsisFishVersion(java.lang.String) + */ + @Override + public void setIsisFishVersion(String isisFishVersion) { + this.isisFishVersion = isisFishVersion; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getDescription() + */ + @Override + public String getDescription() { + + if (description == null) { + if (propertiesParameters != null) { + description = propertiesParameters.getProperty("description", ""); + } else { + // default value + description = ""; + } + } + return this.description; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setDescription(java.lang.String) + */ + @Override + public void setDescription(String description) { + this.description = description; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getRegion() + */ + @Override + public RegionStorage getRegion() { + + if (region == null || !region.getName().equals(getRegionName())) { + // bien faire attention ici que la bonne region est ouverte + // - isis-database-3 dans le cas d'une region normale + // - simulation dans le cas d'une simulation + region = RegionStorage.getRegion(getRegionName()); + } else { + if (log.isDebugEnabled()) { + log.debug(_("Region %s already inited", getRegionName())); + } + } + return this.region; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getNumberOf(fr.ifremer.isisfish.entities.Population) + */ + @Override + public MatrixND getNumberOf(Population pop) { + if (numbers == null) { + numbers = new LinkedHashMap<Population, MatrixND>(); + } + MatrixND result = numbers.get(pop); + if (result == null) { + List groups = pop.getPopulationGroup(); + List zones = pop.getPopulationZone(); + + if (groups.size() == 0) { + groups.add("No group"); + } + if (zones.size() == 0) { + zones.add("No zone"); + } + List[] semantics = new List[] { groups, zones }; + result = MatrixFactory.getInstance().create(semantics); + + numbers.put(pop, result); + } + return result; + } + + /** + * Permet de mettre les parametres de la regle sous une forme String pour + * pouvoir les relire ensuite. + * + * @param ruleIndex l'index de la rule + * @param rule La regle dont on souhaite mettre les parametres dans l'objet + * Properties retourne + * @return L'objet Properties contenant les valeurs des parametres de la + * regle + */ + protected Properties ruleParametertoProperties(int ruleIndex, Rule rule) { + Properties result = new Properties(); + ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion() + .getStorage()); + for (String paramName : RuleStorage.getParameterNames(rule).keySet()) { + String paramValueString; + try { + Object value = RuleStorage.getParameterValue(rule, paramName); + paramValueString = beanUtils.convert(value); + if (paramValueString != null) { + result.setProperty("rule." + ruleIndex + ".parameter." + paramName, paramValueString); + } + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't convert parameter value to String: " + paramName, eee); + } + } + } + + return result; + } + + /** + * Permet de mettre les parametres de l'export sous une forme String pour + * pouvoir les relire ensuite. + * + * @param sensitivityExportIndex l'index de l'export + * @param sensitivityExport l'export dont on souhaite mettre les parametres dans l'objet + * Properties retourné + * @return L'objet Properties contenant les valeurs des parametres de l'export + */ + protected Properties sensitivityExportParametertoProperties( + int sensitivityExportIndex, SensitivityExport sensitivityExport) { + Properties result = new Properties(); + ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion().getStorage()); + for (String paramName : SensitivityExportStorage.getParameterNames(sensitivityExport).keySet()) { + try { + Object value = SensitivityExportStorage.getParameterValue( + sensitivityExport, paramName); + String paramValueString = beanUtils.convert(value); + if (paramValueString != null) { + result.setProperty("sensitivityexport." + + sensitivityExportIndex + ".parameter." + + paramName, paramValueString); + } + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't convert parameter value to String: " + + paramName, eee); + } + } + } + + return result; + } + + /** + * Permet de mettre les parametres du calculateur sous une forme String pour + * pouvoir les relire ensuite. + * + * @param sensitivityIndex l'index du calculateur de sensitivity + * @param calculator Le calculateurdont on souhaite mettre les parametres dans l'objet + * Properties retourne + * @return L'objet Properties contenant les valeurs des parametres du calculateur de sensibilité + */ + protected Properties sensitivityCalculatorParametertoProperties( + int sensitivityIndex, SensitivityCalculator calculator) { + Properties result = new Properties(); + ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion().getStorage()); + for (String paramName : SensitivityStorage.getParameterNames(calculator).keySet()) { + try { + Object value = SensitivityStorage.getParameterValue(calculator, + paramName); + String paramValueString = beanUtils.convert(value); + if (paramValueString != null) { + result.setProperty("sensitivity." + sensitivityIndex + ".parameter." + paramName, paramValueString); + } + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't convert parameter value to String: " + + paramName, eee); + } + } + } + + return result; + } + + /** + * Permet de mettre les parametres du plan sous une forme String pour + * pouvoir les relire ensuite. + * + * @param planIndex l'index du plan + * @param plan Le plan dont on souhaite mettre les parametres dans l'objet + * Properties retourne + * @return L'objet Properties contenant les valeurs des parametres du plan + */ + protected Properties planParametertoProperties(int planIndex, + AnalysePlan plan) { + Properties result = new Properties(); + ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion().getStorage()); + for (String paramName : AnalysePlanStorage.getParameterNames(plan).keySet()) { + try { + Object value = AnalysePlanStorage.getParameterValue(plan,paramName); + String paramValueString = beanUtils.convert(value); + if (paramValueString != null) { + result.setProperty("plan." + planIndex + ".parameter." + + paramName, paramValueString); + } + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't convert parametre value to String: " + + paramName, eee); + } + } + } + + return result; + } + + /** + * Recupere dans prop les valeurs des champs specifique au plan et met a + * jour les champs du plan. + * + * @param planIndex l'index du plan + * @param plan le plan dont les parametres doivent etre lu depuis les + * proprietes + * @param props les proprietes contenant les parametre du plan + */ + protected void populateAnalysePlan(int planIndex, AnalysePlan plan, + Properties props) { + ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion() + .getStorage()); + String planName = AnalysePlanStorage.getName(plan); + String paramTag = "plan." + planIndex + ".parameter."; + + for (Map.Entry<String, Class<?>> entry : AnalysePlanStorage.getParameterNames(plan).entrySet()) { + String propName = entry.getKey(); + Class<?> type = entry.getValue(); + if (TopiaEntity.class.isAssignableFrom(type)) { + type = TopiaEntity.class; + } + String valueString = props.getProperty(paramTag + propName); + Object value = beanUtils.convert(valueString, type); + try { + AnalysePlanStorage.setParameterValue(plan, propName, value); + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't reload field " + propName + " for plan " + + planName, eee); + } + } + } + } + + /** + * Recupere dans prop les valeurs des champs specifique au calculateur de + * sensibilité et met a jour les champs du calculateur. + * + * @param calculatorIndex l'index du calculateur + * @param calculator le calculateur dont les parametres doivent etre lu depuis lesproprietes + * @param props les proprietes contenant les parametre du calculateur + */ + protected void populateSensitivityCalculator(int calculatorIndex, + SensitivityCalculator calculator, Properties props) { + ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion() + .getStorage()); + String calculatorName = SensitivityStorage.getName(calculator); + String paramTag = "sensitivity." + calculatorIndex + ".parameter."; + + for (Map.Entry<String, Class<?>> entry : SensitivityStorage.getParameterNames(calculator).entrySet()) { + String propName = entry.getKey(); + Class<?> type = entry.getValue(); + if (TopiaEntity.class.isAssignableFrom(type)) { + type = TopiaEntity.class; + } + String valueString = props.getProperty(paramTag + propName); + Object value = beanUtils.convert(valueString, type); + try { + SensitivityStorage.setParameterValue(calculator, propName, value); + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't reload field " + propName + + " for sensitivity calculator " + calculatorName, + eee); + } + } + } + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getExtraRules() + */ + @Override + public List<String> getExtraRules() { + + if (extraRules == null) { + // no properties in config ? + extraRules = new ArrayList<String>(); + } + return extraRules; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#addExtraRules(java.lang.String) + */ + @Override + public void addExtraRules(String... extraRules) { + getExtraRules().addAll(Arrays.asList(extraRules)); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getPopulations() + */ + @Override + public List<Population> getPopulations() { + if (populations == null) { + populations = new ArrayList<Population>(); + + if (propertiesParameters != null) { + + try { + // On verifie tout d'abord que l'on ai pas dans une simulation + // si on y es, on utilise le context static non null du thread local + // Resoud les lazy exceptions des parametres des regles + boolean mustClose = false; + TopiaContext tx = SimulationContext.get().getDB(); + + if (tx == null) { + // not in simulation, create transaction + tx = getRegion().getStorage().beginTransaction(); + mustClose = true; + } + + PopulationDAO populationDAO = IsisFishDAOHelper + .getPopulationDAO(tx); + String[] populationList = propertiesParameters.getProperty( + "populations", "").split(","); + for (String name : populationList) { + if (name != null && !"".equals(name)) { + try { + Population population = populationDAO.findByName(name); + populations.add(population); + + String numberAsString = propertiesParameters.getProperty("population." + name + ".number"); + List number = MatrixHelper.convertStringToList(numberAsString); + MatrixND mat = getNumberOf(population); + mat.fromList(number); + } catch (TopiaException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't find population: " + name, eee); + } + } + } + } + + // si la transaction a été ouverte (pas dans une simulation) + // on la referme + if (mustClose) { + tx.closeContext(); + } + } catch (TopiaException eee1) { + if (log.isWarnEnabled()) { + log.warn("Can't get PopulationDAO", eee1); + } + } + } else { + if (log.isDebugEnabled()) { + log.debug("No last read properties, skip population reloading"); + } + } + } + return populations; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setPopulations(java.util.List) + */ + @Override + public void setPopulations(List<Population> populations) { + this.populations = populations; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getStrategies() + */ + @Override + public List<Strategy> getStrategies() { + + if (strategies == null) { + + strategies = new ArrayList<Strategy>(); + + if (propertiesParameters != null) { + strategies = new ArrayList<Strategy>(); + + try { + + // On verifie tout d'abord que l'on ai pas dans une simulation + // si on y es, on utilise le context static non null du thread local + // Resoud les lazy exceptions des parametres des regles + boolean mustClose = false; + TopiaContext tx = SimulationContext.get().getDB(); + + if (tx == null) { + // not in simulation, create transaction + tx = getRegion().getStorage().beginTransaction(); + mustClose = true; + } + + StrategyDAO strategyDAO = IsisFishDAOHelper.getStrategyDAO(tx); + String[] strategyList = propertiesParameters.getProperty("strategies", "").split(","); + for (String name : strategyList) { + if (name != null && !"".equals(name)) { + try { + Strategy str = strategyDAO.findByName(name); + strategies.add(str); + } catch (TopiaException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't find strategy: " + name, eee); + } + } + } + } + + // si la transaction a été ouverte (pas dans une simulation) + // on la referme + if (mustClose) { + tx.closeContext(); + } + } catch (TopiaException eee1) { + if (log.isWarnEnabled()) { + log.warn("Can't get StrategyDAO", eee1); + } + } + } else { + if (log.isDebugEnabled()) { + log.debug("No last read properties, skip strategies reloading"); + } + } + } + return strategies; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setStrategies(java.util.List) + */ + @Override + public void setStrategies(List<Strategy> strategies) { + this.strategies = strategies; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#addAnalysePlan(fr.ifremer.isisfish.simulator.AnalysePlan) + */ + @Override + public void addAnalysePlan(AnalysePlan plan) { + getAnalysePlans().add(plan); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#removeAnalysePlan(fr.ifremer.isisfish.simulator.AnalysePlan) + */ + @Override + public boolean removeAnalysePlan(AnalysePlan plan) { + return getAnalysePlans().remove(plan); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getAnalysePlans() + */ + @Override + public List<AnalysePlan> getAnalysePlans() { + if (analysePlans == null) { + + analysePlans = new ArrayList<AnalysePlan>(); + + if (propertiesParameters != null) { + // analyse plan + String[] planList = propertiesParameters.getProperty("plans", + "").split(","); + int planIndex = 0; + for (String name : planList) { + if (name != null && !"".equals(name)) { + try { + AnalysePlan plan = AnalysePlanStorage + .getAnalysePlan(name) + .getNewAnalysePlanInstance(); + populateAnalysePlan(planIndex++, plan, propertiesParameters); + analysePlans.add(plan); + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't find plan: " + name, eee); + } + } + } + } + } else { + if (log.isDebugEnabled()) { + log.debug("No last read properties, skip plans reloading"); + } + } + } + return this.analysePlans; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setAnalysePlans(java.util.List) + */ + @Override + public void setAnalysePlans(List<AnalysePlan> plans) { + this.analysePlans = plans; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isIndependentPlan() + */ + @Override + public boolean isIndependentPlan() { + boolean result = true; + for (AnalysePlan plan : getAnalysePlans()) { + if (!(plan instanceof AnalysePlanIndependent)) { + result = false; + break; + } + } + return result; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#clearPlans() + */ + @Override + public void clearPlans() { + if (analysePlans != null) { + analysePlans.clear(); + } + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#addRule(fr.ifremer.isisfish.rule.Rule) + */ + @Override + public void addRule(Rule rule) { + getRules().add(rule); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#removeRule(fr.ifremer.isisfish.rule.Rule) + */ + @Override + public boolean removeRule(Rule rule) { + return getRules().remove(rule); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getRules() + */ + @Override + public List<Rule> getRules() { + if (rules == null) { + rules = new ArrayList<Rule>(); + + if (propertiesParameters != null) { + try { + // On verifie tout d'abord que l'on ai pas dans une simulation + // si on y es, on utilise le context static non null du thread local + // Resoud les lazy exceptions des parametres des regles + boolean mustClose = false; + TopiaContext tx = SimulationContext.get().getDB(); + + if (tx == null) { + // not in simulation, create transaction + tx = getRegion().getStorage().beginTransaction(); + mustClose = true; + } + + // rules + String[] ruleList = propertiesParameters.getProperty("rules", "").split(","); + int ruleIndex = 0; + for (String name : ruleList) { + if (name != null && !"".equals(name)) { + try { + Rule rule = RuleStorage.getRule(name).getNewRuleInstance(); + RuleHelper.populateRule(ruleIndex++, tx, rule, propertiesParameters); + rules.add(rule); + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't find rule: " + name, eee); + } + } + } + } + + // si la transaction a été ouverte (pas dans une simulation) + // on la referme + if (mustClose) { + tx.closeContext(); + } + } catch (TopiaException eee1) { + if (log.isWarnEnabled()) { + log.warn("Can't get TopiaContext", eee1); + } + } + } else { + if (log.isDebugEnabled()) { + log.debug("No last read properties, skip rule reloading"); + } + } + } + return rules; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setRules(java.util.List) + */ + @Override + public void setRules(List<Rule> rules) { + this.rules = rules; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#clearRules() + */ + @Override + public void clearRules() { + if (rules != null) { + rules.clear(); + } + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getUseOptimization() + */ + @Override + public boolean getUseOptimization() { + + if (useOptimization == null) { + if (propertiesParameters != null) { + useOptimization = Boolean.valueOf(propertiesParameters.getProperty("useOptimization", "true")); + } else { + useOptimization = Boolean.TRUE; + } + } + return useOptimization.booleanValue(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setUseOptimization(boolean) + */ + @Override + public void setUseOptimization(boolean useOptimization) { + this.useOptimization = useOptimization; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getUseStatistic() + */ + @Override + public boolean getUseStatistic() { + + if (useStatistic == null) { + if (propertiesParameters != null) { + useStatistic = Boolean.valueOf(propertiesParameters.getProperty("useStatistic", "false")); + } else { + useStatistic = Boolean.FALSE; + } + } + return this.useStatistic; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setUseStatistic(boolean) + */ + @Override + public void setUseStatistic(boolean useStatistic) { + this.useStatistic = useStatistic; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getExportNames() + */ + @Override + public List<String> getExportNames() { + if (exportNames == null) { + exportNames = new ArrayList<String>(); + + if (propertiesParameters != null) { + // exports + String[] exportList = propertiesParameters.getProperty("exports", "").split(","); + for (String name : exportList) { + if (name != null && !"".equals(name)) { + exportNames.add(name); + } + } + } + } + return this.exportNames; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setExportNames(java.util.List) + */ + @Override + public void setExportNames(List<String> exportNames) { + this.exportNames = exportNames; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getNumberOfSensitivitySimulation() + */ + @Override + public int getNumberOfSensitivitySimulation() { + + if (numberOfSensitivitySimulation == null) { + + if (propertiesParameters != null) { + numberOfSensitivitySimulation = Integer.valueOf(propertiesParameters.getProperty( + "numberOfSensitivitySimulation", "-1")); + } else { + numberOfSensitivitySimulation = Integer.valueOf(-1); + } + } + + return numberOfSensitivitySimulation.intValue(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setNumberOfSensitivitySimulation(int) + */ + @Override + public void setNumberOfSensitivitySimulation( + int numberOfSensitivitySimulation) { + this.numberOfSensitivitySimulation = numberOfSensitivitySimulation; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getSensitivityCalculator() + */ + @Override + public SensitivityCalculator getSensitivityCalculator() { + + if (sensitivityCalculator == null) { + if (propertiesParameters != null) { + String calculatorName = propertiesParameters + .getProperty("sensitivitycalculator"); + if (!StringUtils.isEmpty(calculatorName)) { + try { + SensitivityStorage sensitivityStorage = SensitivityStorage.getSensitivity(calculatorName); + sensitivityCalculator = sensitivityStorage.getNewSensitivityInstance(); + // 0 = only single sensitivity + populateSensitivityCalculator(0, sensitivityCalculator, propertiesParameters); + } catch (IsisFishException eee) { + sensitivityCalculator = null; + if (log.isWarnEnabled()) { + log.warn("Can't find sensitivity: " + sensitivityCalculator, eee); + } + } + } + } + } + + return sensitivityCalculator; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setSensitivityCalculator(fr.ifremer.isisfish.simulator.sensitivity.SensitivityCalculator) + */ + @Override + public void setSensitivityCalculator( + SensitivityCalculator sensitivityCalculator) { + this.sensitivityCalculator = sensitivityCalculator; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getSensitivityExport() + */ + @Override + public List<SensitivityExport> getSensitivityExport() { + if (sensitivityExports == null) { + sensitivityExports = new ArrayList<SensitivityExport>(); + + if (propertiesParameters != null) { + try { + // On verifie tout d'abord que l'on ai pas dans une simulation + // si on y es, on utilise le context static non null du thread local + // Resoud les lazy exceptions des parametres des regles + boolean mustClose = false; + TopiaContext tx = SimulationContext.get().getDbResult(); + + if (tx == null) { + // not in simulation, create transaction + tx = getRegion().getStorage().beginTransaction(); + mustClose = true; + } + + // sensitivity export + String[] sensitivityExportList = propertiesParameters + .getProperty("sensitivityexports", "").split(","); + int sensitivityExportIndex = 0; + for (String name : sensitivityExportList) { + try { + if (!StringUtils.isEmpty(name)) { + SensitivityExport sensitivityExport = SensitivityExportStorage + .getSensitivityExport(name) + .getNewSensitivityExportInstance(); + ExportHelper.populateSensitivityExport( + sensitivityExportIndex++, tx, + sensitivityExport, + propertiesParameters); + sensitivityExports.add(sensitivityExport); + } + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't find SensitivityExport: " + name, eee); + } + } + } + + // si la transaction a été ouverte (pas dans une simulation) + // on la referme + if (mustClose) { + tx.closeContext(); + } + } catch (TopiaException eee1) { + if (log.isWarnEnabled()) { + log.warn("Can't get TopiaContext", eee1); + } + } + } else { + if (log.isDebugEnabled()) { + log.debug("No last read properties, skip sensitivity exports reloading"); + } + } + } + return sensitivityExports; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setSensitivityExport(java.util.List) + */ + @Override + public void setSensitivityExport(List<SensitivityExport> sensitivityExport) { + this.sensitivityExports = sensitivityExport; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getUseAnalysePlan() + */ + @Override + public boolean getUseAnalysePlan() { + + if (useAnalysePlan == null) { + + if (propertiesParameters != null) { + useAnalysePlan = Boolean.valueOf(propertiesParameters.getProperty("useAnalysePlan", "false")); + } else { + useAnalysePlan = Boolean.FALSE; + } + } + return this.useAnalysePlan; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setUseAnalysePlan(boolean) + */ + @Override + public void setUseAnalysePlan(boolean useAnalysePlan) { + this.useAnalysePlan = useAnalysePlan; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getAnalysePlanNumber() + */ + @Override + public int getAnalysePlanNumber() { + + if (analysePlanNumber == null) { + + if (propertiesParameters != null) { + analysePlanNumber = Integer.valueOf(propertiesParameters.getProperty("analysePlanNumber", "-1")); + } else { + analysePlanNumber = Integer.valueOf(-1); + } + } + + return this.analysePlanNumber.intValue(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setAnalysePlanNumber(int) + */ + @Override + public void setAnalysePlanNumber(int analysePlanNumber) { + this.analysePlanNumber = analysePlanNumber; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getNumberOfYear() + */ + @Override + public int getNumberOfYear() { + + if (numberOfYear == null) { + + if (propertiesParameters != null) { + numberOfYear = Integer.valueOf(propertiesParameters.getProperty("numberOfYear", "1")); + } else { + numberOfYear = Integer.valueOf(1); + } + } + return numberOfYear.intValue(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setNumberOfYear(int) + */ + @Override + public void setNumberOfYear(int numberOfYear) { + this.numberOfYear = numberOfYear; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getUsePreScript() + */ + @Override + public boolean getUsePreScript() { + + if (usePreScript == null) { + + if (propertiesParameters != null) { + usePreScript = Boolean.valueOf(propertiesParameters.getProperty("usePreScript", "false")); + } else { + usePreScript = Boolean.FALSE; + } + } + + return usePreScript.booleanValue(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setUsePreScript(boolean) + */ + @Override + public void setUsePreScript(boolean usePreScript) { + this.usePreScript = usePreScript; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getPreScript() + */ + @Override + public String getPreScript() { + + if (preScript == null) { + + if (propertiesParameters != null) { + preScript = propertiesParameters.getProperty("preScript", ""); + } else { + preScript = ""; + } + } + + return preScript; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setPreScript(java.lang.String) + */ + @Override + public void setPreScript(String preScript) { + this.preScript = preScript; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getRegionName() + */ + @Override + public String getRegionName() { + + if (regionName == null) { + if (propertiesParameters != null) { + regionName = propertiesParameters.getProperty("regionName", ""); + } else { + // defaut value + regionName = ""; + } + } + + return regionName; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setRegionName(java.lang.String) + */ + @Override + public void setRegionName(String regionName) { + this.regionName = regionName; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getSimulatorName() + */ + @Override + public String getSimulatorName() { + + if (simulatorName == null) { + if (propertiesParameters != null) { + simulatorName = propertiesParameters.getProperty( + "simulatorName", "DefaultSimulator.java"); + } else { + simulatorName = "DefaultSimulator.java"; + } + } + return simulatorName; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setSimulatorName(java.lang.String) + */ + @Override + public void setSimulatorName(String simulatorName) { + this.simulatorName = simulatorName; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getResultEnabled() + */ + @Override + public Collection<String> getResultEnabled() { + + if (resultEnabled == null) { + + resultEnabled = new LinkedList<String>(); + + if (propertiesParameters != null) { + String[] resultList = propertiesParameters.getProperty("resultNames", "").split(","); + for (String name : resultList) { + if (name != null && !"".equals(name)) { + resultEnabled.add(name); + } + } + } + } + return resultEnabled; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setResultEnabled(java.util.Collection) + */ + @Override + public void setResultEnabled(Collection<String> resultEnabled) { + this.resultEnabled = resultEnabled; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getTagValue() + */ + @Override + public Map<String, String> getTagValue() { + + if (tagValue == null) { + tagValue = new LinkedHashMap<String, String>(); + + if (propertiesParameters != null) { + for (Object k : propertiesParameters.keySet()) { + if (k.toString().startsWith("tagValue.")) { + String key = k.toString().substring("tagValue.".length()); + String value = propertiesParameters.getProperty(k.toString()); + getTagValue().put(key, value); + } + } + } + } + + return tagValue; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setTagValue(java.util.Map) + */ + @Override + public void setTagValue(Map<String, String> tagValue) { + this.tagValue = tagValue; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getSimulLogLevel() + */ + @Override + public String getSimulLogLevel() { + + if (simulLogLevel == null) { + + if (propertiesParameters != null) { + simulLogLevel = propertiesParameters.getProperty("simulLogLevel", "info"); + } else { + simulLogLevel = "info"; + } + } + + return simulLogLevel; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setSimulLogLevel(java.lang.String) + */ + @Override + public void setSimulLogLevel(String logLevel) { + if (log.isDebugEnabled()) { + log.debug(_("isisfish.params.changeLogLev", simulLogLevel, + logLevel)); + } + this.simulLogLevel = logLevel; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getScriptLogLevel() + */ + @Override + public String getScriptLogLevel() { + + if (scriptLogLevel == null) { + if (propertiesParameters != null) { + scriptLogLevel = propertiesParameters.getProperty( + "scriptLogLevel", "info"); + } else { + scriptLogLevel = "info"; + } + } + + return scriptLogLevel; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setScriptLogLevel(java.lang.String) + */ + @Override + public void setScriptLogLevel(String logLevel) { + if (log.isDebugEnabled()) { + log.debug(_("isisfish.params.changeLogLev", scriptLogLevel, + logLevel)); + } + this.scriptLogLevel = logLevel; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#getLibLogLevel() + */ + @Override + public String getLibLogLevel() { + if (libLogLevel == null) { + if (propertiesParameters != null) { + libLogLevel = propertiesParameters.getProperty("libLogLevel", + "error"); + } else { + libLogLevel = "info"; + } + } + + return libLogLevel; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#setLibLogLevel(java.lang.String) + */ + @Override + public void setLibLogLevel(String logLevel) { + if (log.isDebugEnabled()) { + log.debug(_("isisfish.params.changeLogLev", libLogLevel, logLevel)); + } + this.libLogLevel = logLevel; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isSimulErrorLevel() + */ + @Override + public boolean isSimulErrorLevel() { + return "error".equals(simulLogLevel); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isSimulWarnLevel() + */ + @Override + public boolean isSimulWarnLevel() { + return "warn".equals(simulLogLevel); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isSimulInfoLevel() + */ + @Override + public boolean isSimulInfoLevel() { + return "info".equals(simulLogLevel); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isSimulDebugLevel() + */ + @Override + public boolean isSimulDebugLevel() { + return "debug".equals(simulLogLevel); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isScriptErrorLevel() + */ + @Override + public boolean isScriptErrorLevel() { + return "error".equals(scriptLogLevel); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isScriptWarnLevel() + */ + @Override + public boolean isScriptWarnLevel() { + return "warn".equals(scriptLogLevel); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isScriptInfoLevel() + */ + @Override + public boolean isScriptInfoLevel() { + return "info".equals(scriptLogLevel); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isScriptDebugLevel() + */ + @Override + public boolean isScriptDebugLevel() { + return "debug".equals(scriptLogLevel); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isLibErrorLevel() + */ + @Override + public boolean isLibErrorLevel() { + return "error".equals(libLogLevel); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isLibWarnLevel() + */ + @Override + public boolean isLibWarnLevel() { + return "warn".equals(libLogLevel); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isLibInfoLevel() + */ + @Override + public boolean isLibInfoLevel() { + return "info".equals(libLogLevel); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#isLibDebugLevel() + */ + @Override + public boolean isLibDebugLevel() { + return "debug".equals(libLogLevel); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#copy() + */ + @Override + public SimulationParameter copy() { + SimulationParameterImpl result = new SimulationParameterImpl(); + + if (propertiesParameters != null) { + result.propertiesParameters = new SortedProperties(); + // I think that iteration work better than parameters in contructor + result.propertiesParameters.putAll(propertiesParameters); + } + + // still needed to be copied, if there is no propertiesParameters + result.isisFishVersion = getIsisFishVersion(); + result.description = getDescription(); + result.regionName = getRegionName(); + result.numberOfYear = getNumberOfYear(); + result.simulatorName = getSimulatorName(); + result.useOptimization = getUseOptimization(); + result.useStatistic = getUseStatistic(); + result.usePreScript = getUsePreScript(); + result.preScript = getPreScript(); + result.useAnalysePlan = getUseAnalysePlan(); + result.analysePlanNumber = getAnalysePlanNumber(); + if (exportNames != null) { + result.exportNames = new LinkedList<String>(exportNames); + } + if (strategies != null) { + result.strategies = new LinkedList<Strategy>(strategies); + } + if (populations != null) { + result.populations = new LinkedList<Population>(populations); + } + if (rules != null) { + result.rules = new LinkedList<Rule>(rules); + } + if (analysePlans != null) { + result.analysePlans = new LinkedList<AnalysePlan>(analysePlans); + } + if (resultEnabled != null) { + result.resultEnabled = new LinkedList<String>(resultEnabled); + } + if (numbers != null) { + result.numbers = new HashMap<Population, MatrixND>(numbers); + } + if (tagValue != null) { + result.tagValue = new HashMap<String, String>(tagValue); + } + result.simulLogLevel = getSimulLogLevel(); + result.scriptLogLevel = getScriptLogLevel(); + result.libLogLevel = getLibLogLevel(); + result.numberOfSensitivitySimulation = getNumberOfSensitivitySimulation(); + if (sensitivityExports != null) { + result.sensitivityExports = new LinkedList<SensitivityExport>(sensitivityExports); + } + result.sensitivityCalculator = sensitivityCalculator; + + return result; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#deepCopy() + */ + @Override + public SimulationParameter deepCopy() { + Properties props = toProperties(); + SimulationParameter newInstance = new SimulationParameterImpl(); + newInstance.fromProperties(props); + return newInstance; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#toString() + */ + @Override + public String toString() { + StringBuffer result = new StringBuffer(); + result.append( + _("isisfish.params.toString.simulation.done", + getIsisFishVersion())).append('\n'); + result.append("--------------------\n"); + result.append(getDescription()).append('\n'); + result.append("--------------------\n"); + + if (getUseAnalysePlan()) { + result.append(_("isisfish.params.toString.plan.number", + getAnalysePlanNumber())); + } + + RegionStorage region = getRegion(); + result.append(_("isisfish.params.toString.fishery", region.getName())); + result.append(_("isisfish.params.toString.number.years", + getNumberOfYear())); + + // startegies + List<Strategy> strs = getStrategies(); + result.append(_("isisfish.params.toString.strategies")); + String sep = ""; + for (Strategy str : strs) { + result.append(sep).append(str.getName()); + sep = ","; + } + result.append("\n\n"); + + // populations + result.append(_("isisfish.params.toString.populations")); + sep = ""; + for (Population pop : getPopulations()) { + result.append(sep).append(pop.getName()); + sep = ","; + } + result.append("\n\n"); + + // rules + for (Rule rule : getRules()) { + String name = RuleStorage.getName(rule); + String param = ""; + try { + param = RuleStorage.getParamAsString(rule); + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't convert rule parameter to string for " + + name, eee); + } + } + result.append(_("isisfish.params.toString.rule", name)); + result.append('\n'); + result.append(param); + result.append("\n"); + + } + result.append("\n\n"); + + // analyse plans + for (AnalysePlan plan : getAnalysePlans()) { + String name = RuleStorage.getName(plan); + String param = ""; + try { + param = AnalysePlanStorage.getParamAsString(plan); + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't convert plan parameter to string for " + + name, eee); + } + } + result.append(_("isisfish.params.toString.plan", name)); + result.append('\n'); + result.append(param); + result.append('\n'); + + } + result.append('\n'); + result.append(_("isisfish.params.toString.script.presimulation")) + .append(":\n"); + result.append(getPreScript()); + result.append('\n'); + result.append(_("isisfish.params.toString.simul.logger.level", + simulLogLevel)); + result.append('\n'); + result.append(_("isisfish.params.toString.script.logger.level", + scriptLogLevel)); + result.append('\n'); + result.append(_("isisfish.params.toString.lib.logger.level", + libLogLevel)); + result.append('\n'); + return result.toString(); + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#toProperties() + */ + @Override + public Properties toProperties() { + Properties result = new SortedProperties(); + + result.setProperty("isisFishVersion", getIsisFishVersion()); + result.setProperty("description", getDescription()); + result.setProperty("regionName", getRegionName()); + result.setProperty("numberOfYear", String.valueOf(getNumberOfYear())); + result.setProperty("simulatorName", getSimulatorName()); + result.setProperty("useOptimization", String.valueOf(getUseOptimization())); + result.setProperty("useStatistic", String.valueOf(getUseStatistic())); + + // strategies + if (strategies != null) { + String strategyList = ""; + for (Strategy str : getStrategies()) { + strategyList += str.getName() + ","; + } + result.setProperty("strategies", StringUtil.substring(strategyList, 0, -1)); + } else { + if (propertiesParameters != null + && propertiesParameters.containsKey("strategies")) { + result.setProperty("strategies", propertiesParameters.getProperty("strategies")); + } + } + + // populations + if (populations != null) { + String populationList = ""; + for (Population pop : getPopulations()) { + populationList += pop.getName() + ","; + MatrixND number = getNumberOf(pop); + String numberAsString = String.valueOf(number.toList()); + result.setProperty("population." + pop.getName() + ".number", numberAsString); + } + result.setProperty("populations", StringUtil.substring( + populationList, 0, -1)); + } else { + if (propertiesParameters != null + && propertiesParameters.containsKey("populations")) { + result.setProperty("populations", propertiesParameters.getProperty("populations")); + for (String key : propertiesParameters.stringPropertyNames()) { + if (key.startsWith("population.")) { + result.setProperty(key, propertiesParameters.getProperty(key)); + } + } + } + } + + // rules + if (rules != null) { + String ruleList = ""; + int ruleIndex = 0; + for (Rule rule : getRules()) { + ruleList += RuleStorage.getName(rule) + ","; + Properties ruleProp = ruleParametertoProperties(ruleIndex++, rule); + result.putAll(ruleProp); + } + result.setProperty("rules", ruleList); + } else { + if (propertiesParameters != null + && propertiesParameters.containsKey("rules")) { + result.setProperty("rules", propertiesParameters + .getProperty("rules")); + for (String key : propertiesParameters.stringPropertyNames()) { + if (key.startsWith("rule.")) { + result.setProperty(key, propertiesParameters + .getProperty(key)); + } + } + } + } + + // anaylyse plans + if (analysePlans != null) { + String planList = ""; + int planIndex = 0; + for (AnalysePlan plan : getAnalysePlans()) { + planList += AnalysePlanStorage.getName(plan) + ","; + Properties planProp = planParametertoProperties(planIndex++, plan); + result.putAll(planProp); + } + result.setProperty("plans", planList); + } else { + if (propertiesParameters != null + && propertiesParameters.containsKey("plans")) { + result.setProperty("plans", propertiesParameters + .getProperty("plans")); + for (String key : propertiesParameters.stringPropertyNames()) { + if (key.startsWith("plan.")) { + result.setProperty(key, propertiesParameters.getProperty(key)); + } + } + } + } + + // export names + String exportList = ""; + for (String export : getExportNames()) { + exportList += export + ","; + + } + result.setProperty("exports", exportList); + + // number of sensitivity simulation + result.setProperty("numberOfSensitivitySimulation", String + .valueOf(getNumberOfSensitivitySimulation())); + + // calculator name + if (sensitivityCalculator != null) { + String calculatorName = SensitivityStorage + .getName(getSensitivityCalculator()); + result.setProperty("sensitivitycalculator", calculatorName); + + // calculator parameter + Properties calculatorParams = sensitivityCalculatorParametertoProperties( + 0, getSensitivityCalculator()); + result.putAll(calculatorParams); + } else { + if (propertiesParameters != null + && propertiesParameters.containsKey("sensitivitycalculator")) { + result.setProperty("sensitivitycalculator", + propertiesParameters.getProperty("sensitivitycalculator")); + for (String key : propertiesParameters.stringPropertyNames()) { + if (key.startsWith("sensitivity.")) { + result.setProperty(key, propertiesParameters.getProperty(key)); + } + } + } + } + + // sensitivity exports + if (sensitivityExports != null) { + String sensitivityExportList = ""; + int sensitivityExportIndex = 0; + for (SensitivityExport sensitivityExport : getSensitivityExport()) { + sensitivityExportList += SensitivityExportStorage + .getName(sensitivityExport) + ","; + Properties exportProp = sensitivityExportParametertoProperties( + sensitivityExportIndex++, sensitivityExport); + result.putAll(exportProp); + } + result.setProperty("sensitivityexports", sensitivityExportList); + } else { + if (propertiesParameters != null + && propertiesParameters.containsKey("sensitivityexports")) { + result.setProperty("sensitivityexports", propertiesParameters + .getProperty("sensitivityexports")); + for (String key : propertiesParameters.stringPropertyNames()) { + if (key.startsWith("sensitivityexport.")) { + result.setProperty(key, propertiesParameters.getProperty(key)); + } + } + } + } + + result.setProperty("usePreScript", String.valueOf(getUsePreScript())); + result.setProperty("preScript", getPreScript()); + result.setProperty("useAnalysePlan", String.valueOf(getUseAnalysePlan())); + result.setProperty("analysePlanNumber", String.valueOf(getAnalysePlanNumber())); + + String resultList = ""; + for (String r : getResultEnabled()) { + resultList += r + ","; + } + result.setProperty("resultNames", resultList); + + for (Map.Entry<String, String> e : getTagValue().entrySet()) { + result.setProperty("tagValue." + e.getKey(), e.getValue()); + } + + result.setProperty("simulLogLevel", getSimulLogLevel()); + result.setProperty("scriptLogLevel", getScriptLogLevel()); + result.setProperty("libLogLevel", getLibLogLevel()); + return result; + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#fromProperties(java.util.Properties) + */ + @Override + public void fromProperties(Properties props) { + + // save properties (use full to read again parameter) + // for exports, or rules.... + this.propertiesParameters = props; + + } + + /* + * @see fr.ifremer.isisfish.simulator.SimulationParameter2#reloadContextParameters() + */ + @Override + public void reloadContextParameters() throws TopiaException { + + // On verifie tout d'abord que l'on ai pas dans une simulation + // si on y es, on utilise le context static non null du thread local + // Resoud les lazy exceptions des parametres des regles + boolean mustClose = false; + TopiaContext tx = SimulationContext.get().getDB(); + + if (tx == null) { + // not in simulation, create transaction + tx = getRegion().getStorage().beginTransaction(); + mustClose = true; + } + + // reload rules + if (log.isDebugEnabled()) { + log.debug("Reloading rules"); + } + for (Rule rule : getRules()) { + try { + for (Field field : rule.getClass().getFields()) { + // le champ ne doit pas être privé + if (Modifier.isPublic(field.getModifiers())) { + // si le type est topia entity (ou sous classe) + if (TopiaEntity.class.isAssignableFrom(field.getType())) { + TopiaEntity entity = (TopiaEntity) field.get(rule); + // il est possible que les parametres soient null + // dans ce cas, il ne faut pas essayer de les recharger + if (entity != null) { + // reloading + TopiaEntity newEntity = tx.findByTopiaId(entity + .getTopiaId()); + field.set(rule, newEntity); + } + } + } + } + } catch (IllegalArgumentException e) { + if (log.isErrorEnabled()) { + log.error("Can't refresh rule field", e); + } + } catch (IllegalAccessException e) { + if (log.isErrorEnabled()) { + log.error("Can't access rule field", e); + } + } + } + + // si la transaction a été ouverte (pas dans une simulation) + // on la referme + if (mustClose) { + tx.commitTransaction(); + tx.closeContext(); + } + } +} Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java 2010-04-29 13:16:36 UTC (rev 3033) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationItem.java 2010-04-29 16:14:25 UTC (rev 3034) @@ -23,6 +23,7 @@ import fr.ifremer.isisfish.simulator.SimulationControl; import fr.ifremer.isisfish.simulator.SimulationParameter; +import fr.ifremer.isisfish.simulator.SimulationParameterCache; /** * Objet representant une simulation qui doit être faite. @@ -101,7 +102,7 @@ */ public SimulationItem(SimulationControl control, SimulationParameter param) { this.control = control; - this.parameter = param; + this.parameter = new SimulationParameterCache(param); } /** Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java 2010-04-29 13:16:36 UTC (rev 3033) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java 2010-04-29 16:14:25 UTC (rev 3034) @@ -31,6 +31,7 @@ import java.rmi.RemoteException; import java.text.DateFormat; import java.text.SimpleDateFormat; +import java.util.AbstractMap.SimpleEntry; import java.util.Comparator; import java.util.Date; import java.util.LinkedList; @@ -39,7 +40,6 @@ import java.util.SortedSet; import java.util.Timer; import java.util.TreeSet; -import java.util.AbstractMap.SimpleEntry; import org.apache.commons.io.FileUtils; import org.apache.commons.io.IOUtils; @@ -52,6 +52,7 @@ import fr.ifremer.isisfish.datastore.SimulationStorage; import fr.ifremer.isisfish.simulator.SimulationControl; import fr.ifremer.isisfish.simulator.SimulationParameter; +import fr.ifremer.isisfish.simulator.SimulationParameterImpl; import fr.ifremer.isisfish.simulator.launcher.SimulationJob.PostAction; import fr.ifremer.isisfish.simulator.sensitivity.SensitivityCalculator; import fr.ifremer.isisfish.simulator.sensitivity.SensitivityException; @@ -246,7 +247,7 @@ // - un launcher // - un zip (pour relancement) // Et il est relance avec un parametre "checkonly" - SimulationParameter params = new SimulationParameter(); + SimulationParameter params = new SimulationParameterImpl(); SimulationControl control = new SimulationControl(simulationId); SimulationItem item = new SimulationItem(control, params); Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java 2010-04-29 13:16:36 UTC (rev 3033) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java 2010-04-29 16:14:25 UTC (rev 3034) @@ -66,6 +66,7 @@ import fr.ifremer.isisfish.rule.Rule; import fr.ifremer.isisfish.simulator.AnalysePlan; import fr.ifremer.isisfish.simulator.SimulationParameter; +import fr.ifremer.isisfish.simulator.SimulationParameterImpl; import fr.ifremer.isisfish.simulator.launcher.SimulationService; import fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher; import fr.ifremer.isisfish.simulator.sensitivity.DesignPlan; @@ -125,7 +126,7 @@ log.debug("Init "); } try { - param = new SimulationParameter(); + param = new SimulationParameterImpl(); List<String> resultNames = getResultNames(); // put default value in param param.setSimulatorName(IsisFish.config.getSimulatorClassfile()); Modified: isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/SimulationParameterTest.java =================================================================== --- isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/SimulationParameterTest.java 2010-04-29 13:16:36 UTC (rev 3033) +++ isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/SimulationParameterTest.java 2010-04-29 16:14:25 UTC (rev 3034) @@ -51,7 +51,7 @@ */ @Test public void testDefaultProperties() { - SimulationParameter params = new SimulationParameter(); + SimulationParameter params = new SimulationParameterImpl(); Assert.assertEquals(IsisConfig.getVersion(), params.getIsisFishVersion()); Assert.assertEquals("", params.getDescription()); @@ -91,14 +91,14 @@ @Test public void testToPropertiesFromProperties() { - SimulationParameter params = new SimulationParameter(); + SimulationParameter params = new SimulationParameterImpl(); params.setIsisFishVersion("3.2.0.4"); params.setDescription("desc"); params.setResultEnabled(Collections.singleton("bakh")); // make transform Properties props = params.toProperties(); - SimulationParameter params2 = new SimulationParameter(); + SimulationParameter params2 = new SimulationParameterImpl(); params2.fromProperties(props); Assert.assertEquals("3.2.0.4", params2.getIsisFishVersion()); @@ -122,7 +122,7 @@ Properties props = new SortedProperties(); props.load(basicFileStream); - SimulationParameter param = new SimulationParameter(); + SimulationParameterImpl param = new SimulationParameterImpl(); param.fromProperties(props); Assert.assertEquals("3.2.0.6", param.getIsisFishVersion()); @@ -154,11 +154,11 @@ Properties props = new SortedProperties(); props.load(basicFileStream); - SimulationParameter param = new SimulationParameter(); + SimulationParameterImpl param = new SimulationParameterImpl(); param.fromProperties(props); Properties props2 = param.toProperties(); - SimulationParameter param2 = new SimulationParameter(); + SimulationParameter param2 = new SimulationParameterImpl(); param2.fromProperties(props2); // test rules @@ -187,11 +187,11 @@ Properties props = new SortedProperties(); props.load(basicFileStream); - SimulationParameter param = new SimulationParameter(); + SimulationParameterImpl param = new SimulationParameterImpl(); param.fromProperties(props); Properties props2 = param.toProperties(); - SimulationParameter param2 = new SimulationParameter(); + SimulationParameterImpl param2 = new SimulationParameterImpl(); param2.fromProperties(props2); // test analyse plans @@ -212,7 +212,7 @@ Properties props = new SortedProperties(); props.load(basicFileStream); - SimulationParameter param = new SimulationParameter(); + SimulationParameter param = new SimulationParameterImpl(); param.fromProperties(props); // force some properties instantiation @@ -242,7 +242,7 @@ Properties props = new SortedProperties(); props.load(basicFileStream); - SimulationParameter param = new SimulationParameter(); + SimulationParameter param = new SimulationParameterImpl(); param.fromProperties(props); String toString = param.toString(); @@ -256,7 +256,7 @@ */ @Test public void testCopyWithoutPropertiesLoad() { - SimulationParameter params = new SimulationParameter(); + SimulationParameter params = new SimulationParameterImpl(); params.setIsisFishVersion("3.2.0.4"); params.setDescription("desc"); params.setResultEnabled(Collections.singleton("bakh")); Modified: isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/SimulationPreScriptTest.java =================================================================== --- isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/SimulationPreScriptTest.java 2010-04-29 13:16:36 UTC (rev 3033) +++ isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/SimulationPreScriptTest.java 2010-04-29 16:14:25 UTC (rev 3034) @@ -116,7 +116,7 @@ // init simulation SimulationContext context = SimulationContext.get(); - SimulationParameter params = new SimulationParameter(); + SimulationParameter params = new SimulationParameterImpl(); SimulationStorage simulation = SimulationStorage.create("test_1_int", params); TopiaContext storageContext = simulation.getStorage(); storageContext.createSchema(); @@ -216,7 +216,7 @@ // init simulation SimulationContext context = SimulationContext.get(); - SimulationParameter params = new SimulationParameter(); + SimulationParameter params = new SimulationParameterImpl(); SimulationStorage simulation = SimulationStorage.create("test_2_matrix", params); TopiaContext storageContext = simulation.getStorage(); storageContext.createSchema(); Modified: isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitorTest.java =================================================================== --- isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitorTest.java 2010-04-29 13:16:36 UTC (rev 3033) +++ isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitorTest.java 2010-04-29 16:14:25 UTC (rev 3034) @@ -18,18 +18,18 @@ package fr.ifremer.isisfish.simulator.launcher; +import java.util.AbstractMap.SimpleEntry; import java.util.Comparator; import java.util.Date; import java.util.SortedSet; import java.util.TreeSet; -import java.util.AbstractMap.SimpleEntry; import org.junit.Assert; import org.junit.Test; import fr.ifremer.isisfish.AbstractIsisFishTest; import fr.ifremer.isisfish.simulator.SimulationControl; -import fr.ifremer.isisfish.simulator.SimulationParameter; +import fr.ifremer.isisfish.simulator.SimulationParameterImpl; /** * Test de la class SimulationMonitor. @@ -61,11 +61,11 @@ SimulationService service = SimulationService.getService(); SimulationControl control1 = new SimulationControl("test1"); - SimulationItem item1 = new SimulationItem(control1, new SimulationParameter()); + SimulationItem item1 = new SimulationItem(control1, new SimulationParameterImpl()); SimulationJob job1 = new SimulationJob(service, item1, 0); SimulationControl control2 = new SimulationControl("test2"); - SimulationItem item2 = new SimulationItem(control2, new SimulationParameter()); + SimulationItem item2 = new SimulationItem(control2, new SimulationParameterImpl()); SimulationJob job2 = new SimulationJob(service, item2, 0); Date d = new Date(); Modified: isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SimulationServiceTest.java =================================================================== --- isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SimulationServiceTest.java 2010-04-29 13:16:36 UTC (rev 3033) +++ isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SimulationServiceTest.java 2010-04-29 16:14:25 UTC (rev 3034) @@ -36,6 +36,7 @@ import fr.ifremer.isisfish.entities.StrategyImpl; import fr.ifremer.isisfish.entities.Zone; import fr.ifremer.isisfish.simulator.SimulationParameter; +import fr.ifremer.isisfish.simulator.SimulationParameterImpl; import fr.ifremer.isisfish.simulator.sensitivity.DesignPlan; import fr.ifremer.isisfish.simulator.sensitivity.Factor; import fr.ifremer.isisfish.simulator.sensitivity.SensitivityCalculator; @@ -156,7 +157,7 @@ @Test(timeout=120 * 1000) public void testRunSensivitySimulation() { - SimulationParameter params = new SimulationParameter(); + SimulationParameter params = new SimulationParameterImpl(); // set params region params.setRegionName("DemoRegion"); // set population

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r3033 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore
by chatellier＠users.labs.libre-entreprise.org April 29, 2010

April 29, 2010

Author: chatellier Date: 2010-04-29 13:16:36 +0000 (Thu, 29 Apr 2010) New Revision: 3033 Log: Fix javadoc Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/RegionStorage.java Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/RegionStorage.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/RegionStorage.java 2010-04-26 15:41:31 UTC (rev 3032) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/RegionStorage.java 2010-04-29 13:16:36 UTC (rev 3033) @@ -212,8 +212,6 @@ * Recupere le TopiaContext d'une region. * * @param name le nom de la region a recuperer - * @param inSimulation this is a hack to known if simulation is requested - * from a simulation or not * @return Le TopiaContext contenant la region, si la region n'existait null * est retourné */

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r3032 - isis-fish/trunk
by chatellier＠users.labs.libre-entreprise.org April 26, 2010

April 26, 2010

Author: chatellier Date: 2010-04-26 15:41:31 +0000 (Mon, 26 Apr 2010) New Revision: 3032 Log: [maven-release-plugin] prepare for next development iteration Modified: isis-fish/trunk/pom.xml Modified: isis-fish/trunk/pom.xml =================================================================== --- isis-fish/trunk/pom.xml 2010-04-26 15:41:28 UTC (rev 3031) +++ isis-fish/trunk/pom.xml 2010-04-26 15:41:31 UTC (rev 3032) @@ -10,7 +10,7 @@ <groupId>ifremer</groupId> <artifactId>isis-fish</artifactId> - <version>3.3.0.3</version> + <version>3.3.0.4-SNAPSHOT</version>  <dependencies> @@ -683,9 +683,9 @@   <scm> - <connection>scm:svn:svn://anonymous at labs.libre-entreprise.org/svnroot/isis-fish/isis-fish/tags/isis-fish-3.3.0.3</connection> - <developerConnection>scm:svn:svn+ssh://chatellier at labs.libre-entreprise.org/svnroot/isis-fish/isis-fish/tags/isis-fish-3.3.0.3</developerConnection> - <url>https://labs.libre-entreprise.org/scm/viewvc.php/isis-fish/tags/isis-fish-3…</url> + <connection>scm:svn:svn://anonymous at labs.libre-entreprise.org/svnroot/isis-fish/isis-fish/trunk</connection> + <developerConnection>scm:svn:svn+ssh://chatellier at labs.libre-entreprise.org/svnroot/isis-fish/isis-fish/trunk</developerConnection> + <url>https://labs.libre-entreprise.org/scm/viewvc.php/isis-fish/trunk/?root=isis…</url> </scm> <repositories>

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r3031 - isis-fish/tags
by chatellier＠users.labs.libre-entreprise.org April 26, 2010

April 26, 2010

Author: chatellier Date: 2010-04-26 15:41:28 +0000 (Mon, 26 Apr 2010) New Revision: 3031 Log: [maven-scm] copy for tag isis-fish-3.3.0.3 Added: isis-fish/tags/isis-fish-3.3.0.3/

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r3030 - isis-fish/trunk
by chatellier＠users.labs.libre-entreprise.org April 26, 2010

April 26, 2010

Author: chatellier Date: 2010-04-26 15:41:23 +0000 (Mon, 26 Apr 2010) New Revision: 3030 Log: [maven-release-plugin] prepare release isis-fish-3.3.0.3 Modified: isis-fish/trunk/pom.xml Modified: isis-fish/trunk/pom.xml =================================================================== --- isis-fish/trunk/pom.xml 2010-04-26 14:41:07 UTC (rev 3029) +++ isis-fish/trunk/pom.xml 2010-04-26 15:41:23 UTC (rev 3030) @@ -10,7 +10,7 @@ <groupId>ifremer</groupId> <artifactId>isis-fish</artifactId> - <version>3.3.0.3-SNAPSHOT</version> + <version>3.3.0.3</version>  <dependencies> @@ -683,9 +683,9 @@   <scm> - <connection>scm:svn:svn://anonymous at labs.libre-entreprise.org/svnroot/isis-fish/isis-fish/trunk</connection> - <developerConnection>scm:svn:svn+ssh://chatellier at labs.libre-entreprise.org/svnroot/isis-fish/isis-fish/trunk</developerConnection> - <url>https://labs.libre-entreprise.org/scm/viewvc.php/isis-fish/trunk/?root=isis…</url> + <connection>scm:svn:svn://anonymous at labs.libre-entreprise.org/svnroot/isis-fish/isis-fish/tags/isis-fish-3.3.0.3</connection> + <developerConnection>scm:svn:svn+ssh://chatellier at labs.libre-entreprise.org/svnroot/isis-fish/isis-fish/tags/isis-fish-3.3.0.3</developerConnection> + <url>https://labs.libre-entreprise.org/scm/viewvc.php/isis-fish/tags/isis-fish-3…</url> </scm> <repositories>

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