[Coser-commits] r1135 - trunk/coser-business/src/main/java/fr/ifremer/coser/services

Author: tchemit Date: 2014-03-08 08:25:34 +0100 (Sat, 08 Mar 2014) New Revision: 1135 Url: http://forge.codelutin.com/projects/coser/repository/revisions/1135 Log: remove duplicate WebService Removed: trunk/coser-business/src/main/java/fr/ifremer/coser/services/WebService2.java Deleted: trunk/coser-business/src/main/java/fr/ifremer/coser/services/WebService2.java =================================================================== --- trunk/coser-business/src/main/java/fr/ifremer/coser/services/WebService2.java 2014-03-07 23:12:11 UTC (rev 1134) +++ trunk/coser-business/src/main/java/fr/ifremer/coser/services/WebService2.java 2014-03-08 07:25:34 UTC (rev 1135) @@ -1,3027 +0,0 @@ -/* - * #%L - * Coser :: Business - * %% - * Copyright (C) 2010 - 2013 Ifremer, Codelutin, Chatellier Eric - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Lesser General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Lesser Public License for more details. - * - * You should have received a copy of the GNU General Lesser Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/lgpl-3.0.html>. - * #L% - */ - -package fr.ifremer.coser.services; - -import static org.nuiton.i18n.I18n.t; -import static org.nuiton.i18n.I18n.l; - -import java.io.File; -import java.io.FileFilter; -import java.io.FileInputStream; -import java.io.FileOutputStream; -import java.io.IOException; -import java.io.InputStream; -import java.io.OutputStream; -import java.io.StringWriter; -import java.io.Writer; -import java.nio.charset.Charset; -import java.text.DateFormat; -import java.text.SimpleDateFormat; -import java.util.ArrayList; -import java.util.Collection; -import java.util.Collections; -import java.util.Date; -import java.util.HashMap; -import java.util.Iterator; -import java.util.LinkedHashMap; -import java.util.List; -import java.util.Locale; -import java.util.Map; -import java.util.Map.Entry; -import java.util.Properties; -import java.util.Set; -import java.util.SortedSet; -import java.util.TreeMap; -import java.util.TreeSet; -import java.util.regex.Matcher; - -import fr.ifremer.coser.bean.IndicatorMap; -import fr.ifremer.coser.bean.ZoneMap; -import org.apache.commons.collections4.CollectionUtils; -import org.apache.commons.collections4.MapUtils; -import org.apache.commons.collections4.keyvalue.MultiKey; -import org.apache.commons.collections4.map.MultiKeyMap; -import org.apache.commons.io.FileUtils; -import org.apache.commons.io.IOUtils; -import org.apache.commons.lang3.StringEscapeUtils; -import org.apache.commons.lang3.StringUtils; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.apache.commons.mail.EmailException; -import org.apache.commons.mail.MultiPartEmail; -import org.apache.http.HttpResponse; -import org.apache.http.client.ClientProtocolException; -import org.apache.http.client.HttpClient; -import org.apache.http.client.methods.HttpPost; -import org.apache.http.entity.mime.HttpMultipartMode; -import org.apache.http.entity.mime.MultipartEntity; -import org.apache.http.entity.mime.content.StringBody; -import org.apache.http.impl.client.DefaultHttpClient; -import org.nuiton.util.FileUtil; -import org.nuiton.util.StringUtil; -import org.nuiton.util.ZipUtil; -import org.w3c.dom.Document; -import org.xhtmlrenderer.pdf.ITextRenderer; - -import com.itextpdf.text.DocumentException; - -import fr.ifremer.coser.CoserBusinessConfig; -import fr.ifremer.coser.CoserBusinessException; -import fr.ifremer.coser.CoserConstants; -import fr.ifremer.coser.CoserConstants.Category; -import fr.ifremer.coser.CoserUtils; -import fr.ifremer.coser.bean.Project; -import fr.ifremer.coser.bean.RSufiResult; -import fr.ifremer.coser.bean.RSufiResultPath; -import fr.ifremer.coser.bean.Selection; -import fr.ifremer.coser.storage.DataStorage; -import fr.ifremer.coser.util.DataType; -import fr.ifremer.coser.util.InputStreamKnownSizeBody; -import fr.ifremer.coser.util.ProgressMonitor; -import fr.ifremer.coser.util.ProgressStream; -import freemarker.cache.ClassTemplateLoader; -import freemarker.ext.beans.BeansWrapper; -import freemarker.template.Configuration; -import freemarker.template.Template; -import freemarker.template.TemplateException; - -/** - * Service specifique à l'interface web de visualisation et à la partie UI - * qui sert a envoyer les resultats vers l'interface web. - * - * Ce service, contrairement aux autres a un état, les indicateurs et zones - * chargées persistent après chargement, car elle ne peuvent pas changer - * tant que l'application est en cours d'utilisation. - * - * Il faut garder à l'esprit que les projets n'ont pas forcement - * de données publiées, donc le chargement du projet est possible, mais - * pas les données de controle et les données de selection (donc plutot - * travailler sur les fichiers estcomind/estpopind que sur les 4 tables). - * - * @author chatellier - * @version $Revision$ - * - * Last update : $Date$ - * By : $Author$ - */ -public class WebService2 { - - private static final Log log = LogFactory.getLog(WebService.class); - - protected CoserBusinessConfig config; - - protected CommonService commonService; - - protected ProjectService projectService; - - protected PublicationService publicationService; - - /** Indicator map (id, locale > translation, id, "unit" > unit) (etat du service). */ -// protected MultiKeyMap indicatorsMap; - protected IndicatorMap indicatorsMap; - - /** Zones map (etat du service). */ -// protected DataStorage zonesMap; - protected ZoneMap zonesMap; - - /** Freemarker */ - protected Configuration freemarkerConfiguration; - - public WebService2(CoserBusinessConfig config) { - this.config = config; - - commonService = new CommonService(config); - projectService = new ProjectService(config); - publicationService = new PublicationService(config); - - freemarkerConfiguration = new Configuration(); - - // needed to overwrite "Defaults to default system encoding." - // fix encoding issue on some systems - freemarkerConfiguration.setEncoding(Locale.getDefault(), "UTF-8"); - - // specific template loader to get template from jars (classpath) - ClassTemplateLoader templateLoader = new ClassTemplateLoader(WebService.class, "/ftl"); - freemarkerConfiguration.setTemplateLoader(templateLoader); - - // pour les maps dans les template (entre autre) - freemarkerConfiguration.setObjectWrapper(new BeansWrapper()); - } - - protected IndicatorMap getIndicatorsMap() { - if (indicatorsMap == null) { - indicatorsMap = new IndicatorMap(config.getWebIndicatorsFile()); - } - return indicatorsMap; - } -// /** -// * Charge les indicateurs disponible depuis le fichier des indicateurs. -// * (indid, indname) -// * -// * @return indicators map -// * @throws CoserBusinessException -// */ -// protected MultiKeyMap getIndicatorsMap() throws CoserBusinessException { -// -// if (indicatorsMap == null) { -// indicatorsMap = new MultiKeyMap(); -// File indicatorsFile = config.getWebIndicatorsFile(); -// DataStorage indicatorsStorage = commonService.loadCSVFile(indicatorsFile); -// Iterator<String[]> iteratorInd = indicatorsStorage.iterator(true); -// while (iteratorInd.hasNext()) { -// // "id";"label_fr";"label_en";"label_es";"unit" -// String[] indicator = iteratorInd.next(); -// indicatorsMap.put(indicator[0], "fr", indicator[1]); -// indicatorsMap.put(indicator[0], "en", indicator[2]); -// indicatorsMap.put(indicator[0], "es", indicator[3]); -// indicatorsMap.put(indicator[0], "unit", indicator[4]); -// } -// } -// -// return indicatorsMap; -// } - -// /** -// * Get indicator translation by checking correct locale. -// * -// * @param indicator indicator code -// * @param localeCode locale -// * @return indicator translation -// */ -// protected String getIndicatorValue(String indicator, String localeCode) throws CoserBusinessException { -// String localLocaleCode = localeCode; -// if (!"fr".equals(localLocaleCode) && !"es".equals(localLocaleCode) -// && !"unit".equals(localLocaleCode)) { -// localLocaleCode = "en"; // en by default -// } -// return (String)getIndicatorsMap().get(indicator, localLocaleCode); -// } - -// /** -// * Charge les zones disponibles depuis le fichier des zones. -// * (zoneid, zonename) -// * -// * @return zones map -// * @throws CoserBusinessException -// */ -// public DataStorage getZonesMap() throws CoserBusinessException { -// -// if (zonesMap == null) { -// File zoneFile = config.getWebZonesFile(); -// -// // l'operation n'est pas obligatoire pour tous les clients -// // lourd, le fichier peut donc ne pas exister -// if (zoneFile.isFile()) { -// zonesMap = commonService.loadCSVFile(zoneFile); -// } -// else { -// // fait volontairement un return new, n'affecte pas l'etat du -// // service -// return new MemoryDataStorage(); -// } -// } -// -// return zonesMap; -// } - - /** - * Charge les zones disponibles depuis le fichier des zones. - * (zoneid, zonename) - * - * @return zones map - */ - public ZoneMap getZonesMap() { - - if (zonesMap == null) { - File zoneFile = config.getWebZonesFile(); - - // l'operation n'est pas obligatoire pour tous les clients - // lourd, le fichier peut donc ne pas exister - if (zoneFile.isFile()) { - zonesMap = new ZoneMap(zoneFile); - } - else { - // fait volontairement un return new, n'affecte pas l'etat du - // service - return new ZoneMap(null); - } - } - - return zonesMap; - } - - /** - * Retourne les nom d'une zone (avec la facade, l'année et la serie) en - * fonction de l'id de la zone. - * - * @param zoneId zone id - * @return zone name (or {@code null} if not found) - */ - public String getZoneFullName(String zoneId) { - return getZonesMap().getZoneFullName(zoneId); - } - - /** - * Retourne les zones disponible par facade. - * - * @return couple facadeid/list<zoneid> - */ - public Map<String, List<String>> getZoneByFacade() { - return getZonesMap().getZoneByFacade(); - } - - /** - * Recupere la liste des cartes pour chaque id de zone sous forme de Map. - * - * @return zone images map - */ - public Map<String, String> getZonePictures() { - return getZonesMap().getZonePictures(); - } - - /** - * Recupere la liste des meta info pour chaque id de zone sous forme de Map. - * - * @param locale locale - * @return zone meta info map - */ - public Map<String, String> getZoneMetaInfo(Locale locale) { - return getZonesMap().getZoneMetaInfo(locale); - } - - /** - * Get facades list (as facadeid/facadename). - * - * @return facades map - */ - public Map<String, String> getFacades() { - return getZonesMap().getFacades(); - } - - /** - * Pour une zone principale, recupere la liste des couples sous-zone / - * campagne qui sont disponible dans cette zone principale. - * - * @param facade facade (le nom de la facade principale) (can be {@code null} : don't filter on facade) - * @param onlyWithSource retourn zone liste with available source data - * @param forMap look in map directory - * @return couple subzoneid/sub - * @throws CoserBusinessException - */ - public Map<String, String> getZoneForFacade(String facade, boolean onlyWithSource, boolean forMap) throws CoserBusinessException { - Map<String, String> zonesForFacade = new HashMap<String, String>(); - - // get subzone for main zone - Collection<String> subZones = getZonesMap().getZonesForFacade(facade); -// Collection<String> subZones = new ArrayList<String>(); -// Iterator<String[]> itZone = getZonesMap().storage.iterator(true); -// while (itZone.hasNext()) { -// // "id";"facadeid";"facade";"zone";"periode";"serie";"comment";"comment_en";"comment_es";"map" -// String[] tuple = itZone.next(); -// if (facade == null || tuple[1].equals(facade)) { -// subZones.add(tuple[0]); -// } -// } - - File projectsDirectory = null; - if (forMap) { - projectsDirectory = config.getWebMapsProjectsDirectory(); - } - else { - projectsDirectory = config.getWebIndicatorsProjectsDirectory(); - } - - // get survey names in subZones collection - File[] projectFiles = projectsDirectory.listFiles(); - - // project iteration - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - - // selection iteration - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - - // result iteration - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - if (!onlyWithSource || rsufiResult.isDataAllowed()) { - String resultZoneId = rsufiResult.getZone(); - if (subZones.contains(resultZoneId)) { - String zoneid = resultZoneId; - // get zone name -// // "id";"facadeid";"facade";"zone";"periode";"serie";"comment";"comment_en";"map" -// int zoneIndex = getZonesMap().indexOf(zoneid); -// String[] zoneData = getZonesMap().get(zoneIndex); -// String zoneName = zoneData[3] + " - " + zoneData[4] + " - " + zoneData[5]; - String zoneName = getZonesMap().getZoneFullNameWithNoFacade(zoneid); - - zonesForFacade.put(zoneid, zoneName); - } - } - } - } - } - } - } - } - } - } - } - - return zonesForFacade; - } - -// /** -// * Get facades list (as facadeid/facadename). -// * -// * @return facades map -// * @throws CoserBusinessException -// */ -// public Map<String, String> getFacades() throws CoserBusinessException { -// Map<String, String> facades = new LinkedHashMap<String, String>(); -// // "id";"facadeid";"facade";"zone";"periode";"serie";"comment";"comment_en";"comment_es";"map" -// DataStorage zonesMap = getZonesMap(); -// Iterator<String[]> itZone = zonesMap.iterator(true); -// while (itZone.hasNext()) { -// String[] tuple = itZone.next(); -// // on a pas d'id pour les facades -// facades.put(tuple[1], tuple[2]); -// } -// return facades; -// } -// /** -// * Retourne les zones disponible par facade. -// * -// * @return couple facadeid/list<zoneid> -// * @throws CoserBusinessException -// */ -// public Map<String, List<String>> getZoneByFacade() throws CoserBusinessException { -// Map<String, List<String>> zonesByFacade = new HashMap<String, List<String>>(); -// -// // get subzone for main zone -// Iterator<String[]> itZone = getZonesMap().iterator(true); -// while (itZone.hasNext()) { -// // "id";"facadeid";"facade";"zone";"periode";"serie";"comment";"comment_en";"comment_es";"map" -// String[] tuple = itZone.next(); -// String facadeid = tuple[1]; -// String zoneid = tuple[0]; -// List<String> zones = zonesByFacade.get(facadeid); -// if (zones == null) { -// zones = new ArrayList<String>(); -// zonesByFacade.put(facadeid, zones); -// } -// zones.add(zoneid); -// } -// -// return zonesByFacade; -// } -// -// /** -// * Recupere la liste des cartes pour chaque id de zone sous forme de Map. -// * -// * @return zone images map -// * @throws CoserBusinessException -// */ -// public Map<String, String> getZonePictures() throws CoserBusinessException { -// Map<String, String> result = new HashMap<String, String>(); -// -// Iterator<String[]> itZone = getZonesMap().iterator(true); -// while (itZone.hasNext()) { -// // "id";"facadeid";"facade";"zone";"periode";"serie";"comment";"comment_en";"comment_es";"map" -// String[] tuple = itZone.next(); -// result.put(tuple[0], tuple[9]); -// } -// -// return result; -// } -// -// /** -// * Recupere la liste des meta info pour chaque id de zone sous forme de Map. -// * -// * @param locale locale -// * @return zone meta info map -// * @throws CoserBusinessException -// */ -// public Map<String, String> getZoneMetaInfo(Locale locale) throws CoserBusinessException { -// Map<String, String> result = new HashMap<String, String>(); -// -// Iterator<String[]> itZone = getZonesMap().iterator(true); -// while (itZone.hasNext()) { -// // "id";"facadeid";"facade";"zone";"periode";"serie";"comment";"comment_en";"comment_es";"map" -// String[] tuple = itZone.next(); -// if (locale != null && "fr".equals(locale.getLanguage())) { -// result.put(tuple[0], tuple[6]); -// } else if (locale != null && "es".equals(locale.getLanguage())) { -// result.put(tuple[0], tuple[8]); -// } else { -// result.put(tuple[0], tuple[7]); -// } -// } -// -// return result; -// } - -// /** -// * Retourne les nom d'une zone (avec la facade, l'année et la serie) en -// * fonction de l'id de la zone. -// * -// * @param zoneId zone id -// * @return zone name (or {@code null} if not found) -// * @throws CoserBusinessException -// */ -// public String getZoneFullName(String zoneId) throws CoserBusinessException { -// DataStorage localZoneMap = getZonesMap(); -// String resultName = null; -// // "id";"facadeid";"facade";"zone";"periode";"serie";"comment";"comment_en";"comment_es";"map" -// int zoneIndex = localZoneMap.indexOf(zoneId); -// if (zoneIndex != -1) { -// resultName = localZoneMap.get(zoneIndex)[2]; -// resultName += " - " + localZoneMap.get(zoneIndex)[3]; -// resultName += " - " + localZoneMap.get(zoneIndex)[4]; -// resultName += " - " + localZoneMap.get(zoneIndex)[5]; -// } -// return resultName; -// } - - /** - * Retourne tous les projets qui ont des résultats. - * - * De la forme d'une liste de de path (à la tree path) : - * ProjetName/SelectionName/ResultName - * - * @param beginDate begin date (can be null) - * @param endDate end date (can be null) - * @param onlyPubliableResult select only publiable results - * - * @return results paths - * @throws CoserBusinessException - */ - public List<RSufiResultPath> findAllProjectWithResult(Date beginDate, Date endDate, boolean onlyPubliableResult) throws CoserBusinessException { - List<RSufiResultPath> results = findAllProjectWithResult(config.getProjectsDirectory(), - beginDate, - endDate, - onlyPubliableResult); - return results; - } - - /** - * Retourne tous les projets qui ont des résultats. - * - * De la forme d'une liste de de path (à la tree path) : - * ProjetName/SelectionName/ResultName - * - * @param projectsDirectory where to search for projects - * @param beginDate begin date (can be null) - * @param endDate end date (can be null) - * @param onlyPubliableResult select only publiable results - * - * @return results paths - * @throws CoserBusinessException - */ - public List<RSufiResultPath> findAllProjectWithResult(File projectsDirectory, Date beginDate, Date endDate, boolean onlyPubliableResult) throws CoserBusinessException { - List<RSufiResultPath> results = new ArrayList<RSufiResultPath>(); - - // loop on projets - File[] projects = projectsDirectory.listFiles(); - if (projects != null) { - for (File existingProject : projects) { - if (existingProject.isDirectory()) { - String projectName = existingProject.getName(); - Project p = new Project(projectName); - - // loop on selections - File selectionsDirectory = new File(existingProject, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selections = selectionsDirectory.listFiles(); - if (selections != null) { - for (File existingSelection : selections) { - if (existingSelection.isDirectory()) { - String selectionName = existingSelection.getName(); - Selection s = new Selection(selectionName); - - // loop on result - File rsufisDirectory = new File(existingSelection, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] rSufiResults = rsufisDirectory.listFiles(); - if (rSufiResults != null) { - for (File rSufiResult : rSufiResults) { - if (rSufiResult.isDirectory()) { - RSufiResult r = projectService.getRSufiResult(rSufiResult); - - boolean candidate = isCandidateResult(r, beginDate, endDate, onlyPubliableResult); - if (candidate) { - RSufiResultPath result = new RSufiResultPath(p, s, r); - results.add(result); - } - } - } - } - } - } - } - } - } - } - - return results; - } - - /** - * Test if result is valid with filtering. - * - * @param rsufiResult rsufi result to test - * @param beginDate begin date (can be null) - * @param endDate end date (can be null) - * @param onlyPubliableResult select only publiable results - * @return if result is valid candidate - */ - protected boolean isCandidateResult(RSufiResult rsufiResult, Date beginDate, - Date endDate, boolean onlyPubliableResult) { - - boolean result = true; - - if (beginDate != null) { - result &= rsufiResult.getCreationDate().compareTo(beginDate) >= 0; - } - - if (endDate != null) { - result &= rsufiResult.getCreationDate().compareTo(endDate) <= 0; - } - - if (onlyPubliableResult) { - result &= rsufiResult.isPubliableResult(); - } - - return result; - } - - /** - * Extract directory to custom directory. - * - * @param selectedResults selected result paths - * @param extractDirectory extract directory (can be null) - * @param publishDataResults result paths flaged with results export - * @return extracted file (no automatically deleted) - * @throws CoserBusinessException - */ - public File performResultExtract(Collection<RSufiResultPath> selectedResults, Collection<RSufiResultPath> publishDataResults, File extractDirectory) throws CoserBusinessException { - File prepareZip = null; - try { - - // create zip file name not random name - if (extractDirectory == null) { - prepareZip = File.createTempFile("Coserextract-", ".zip"); - } - else { - // cas extraction vers un répertoire specifique - DateFormat dateFormat = new SimpleDateFormat("yyyyMMdd"); - String zipName = "Coserextract" + dateFormat.format(new Date()) + ".zip"; - prepareZip = new File(extractDirectory, zipName); - } - - // copy selectively all data to target directory - MultipleFileFilter mFileFilters = new MultipleFileFilter(); - for (RSufiResultPath path : selectedResults) { - // load projet, needed to known source data file name - Project project = path.getProject(); - project = projectService.openProject(project.getName()); - - OneResultFileFilter oneRFF = new OneResultFileFilter(config.getProjectsDirectory(), - project, path.getSelection(), path.getRsufiResult(), publishDataResults.contains(path)); - mFileFilters.add(oneRFF); - } - - // create zip temp file - File projectsDirectory = config.getProjectsDirectory(); - - //ZipUtil.compress(prepareZip, projectsDirectory, mFileFilters); - // compress les projets à la racines de l'archive - // sans le dossier "projects" - Collection<File> files = FileUtil.getFilteredElements(projectsDirectory, mFileFilters, true); - ZipUtil.compressFiles(prepareZip, projectsDirectory, files, false); - } catch (IOException ex) { - throw new CoserBusinessException("Can't prepare upload data", ex); - } - - return prepareZip; - } - - /** - * Upload user selected result to coser web front-end using common http - * client. - * - * TODO remove les 4 listes s'il y a mieux. - * - * @param selectedResults selected result (collection of project/selection/rsufiresult) - * @param indicatorsResults results selected as indicator results - * @param mapResults results selected as map result - * @param publishDataResults results selected as results published with data - * @param login remote admin login - * @param password remote admin password - * @param progress progress monitor - * @return upload error status or {@code null} if no error - * @throws CoserBusinessException - */ - public String performResultUpload(Collection<RSufiResultPath> selectedResults, - Collection<RSufiResultPath> indicatorsResults, Collection<RSufiResultPath> mapResults, - Collection<RSufiResultPath> publishDataResults, String login, - String password, ProgressMonitor progress) throws CoserBusinessException { - - String uploadStatus = null; - - // first copy prepare directory with only necessary data - // ie project with only selected selections - // and selection with only selected results - - progress.setCurrent(0); - progress.setText(t("coser.business.uploadresult.modifyResultOptions")); - modifyRSufiResults(selectedResults, indicatorsResults, mapResults, publishDataResults); - - progress.setText(t("coser.business.uploadresult.checkcollision")); - checkDataCollision(selectedResults); - - progress.setText(t("coser.business.uploadresult.preparezip")); - - // default extract to temp directory with data sources - File prepareZip = performResultExtract(selectedResults, publishDataResults, null); - - progress.setText(t("coser.business.uploadresult.sendzip")); - progress.setTotal((int)prepareZip.length()); - - // then upload zip file to website - try { - HttpClient httpclient = new DefaultHttpClient(); - MultipartEntity reqEntity = new MultipartEntity(HttpMultipartMode.BROWSER_COMPATIBLE); - - // login/password param (password encoded) - StringBody loginBody = new StringBody(login, Charset.forName("UTF-8")); - reqEntity.addPart("login", loginBody); - String sha1password = StringUtil.encodeSHA1(password); - StringBody passwordBody = new StringBody(sha1password, Charset.forName("UTF-8")); - reqEntity.addPart("sha1Password", passwordBody); - - // file param - ProgressStream stream = new ProgressStream(new FileInputStream(prepareZip), progress); - InputStreamKnownSizeBody fileBody = new InputStreamKnownSizeBody(stream, prepareZip.length(), - "application/zip", prepareZip.getName()); - reqEntity.addPart("resultFile", fileBody); - - HttpPost httppost = new HttpPost(config.getWebUploadURL()); - httppost.setEntity(reqEntity); - - if (log.isInfoEnabled()) { - log.info("Uploading " + prepareZip + " to " + httppost.getURI()); - } - - HttpResponse response = httpclient.execute(httppost); - - if (response.getStatusLine().getStatusCode() != 200) { - uploadStatus = response.getStatusLine().getReasonPhrase(); - } - } catch (ClientProtocolException ex) { - throw new CoserBusinessException("Can't upload file", ex); - } catch (IOException ex) { - throw new CoserBusinessException("Can't upload file", ex); - } - - prepareZip.delete(); - - return uploadStatus; - } - - /** - * Modifie les types et options de certains résultats rsufi (map result, - * data sources result). - * - * @param selectedResults selected result (collection of project/selection/rsufiresult) - * @param indicatorsResults results selected as indicator results - * @param mapResults map results - * @param publishDataResults publish data results - * @throws CoserBusinessException - */ - protected void modifyRSufiResults(Collection<RSufiResultPath> selectedResults, - Collection<RSufiResultPath> indicatorsResults, Collection<RSufiResultPath> mapResults, - Collection<RSufiResultPath> publishDataResults) throws CoserBusinessException { - - // TODO echatellier 20110117 revoir ce code - - // attention, il faut sauver tout les resultats, sinon, les - // decochage de type map / publish result ne seront pas pris en compte - - // reset type map and data source for all - for (RSufiResultPath selectedResult : selectedResults) { - RSufiResult rsufiResult = selectedResult.getRsufiResult(); - rsufiResult.setIndicatorsResult(false); - rsufiResult.setMapsResult(false); - rsufiResult.setDataAllowed(false); - } - - // set map type - for (RSufiResultPath indicatorsResult : indicatorsResults) { - RSufiResult rsufiResult = indicatorsResult.getRsufiResult(); - rsufiResult.setIndicatorsResult(true); - } - - // set map type - for (RSufiResultPath mapResult : mapResults) { - RSufiResult rsufiResult = mapResult.getRsufiResult(); - rsufiResult.setMapsResult(true); - } - - // set data type - for (RSufiResultPath publishDataResult : publishDataResults) { - RSufiResult rsufiResult = publishDataResult.getRsufiResult(); - rsufiResult.setDataAllowed(true); - } - - // save all selected results - for (RSufiResultPath selectedResult : selectedResults) { - Project project = selectedResult.getProject(); - Selection selection = selectedResult.getSelection(); - RSufiResult rsufiResult = selectedResult.getRsufiResult(); - - File projectDirectory = new File(config.getProjectsDirectory(), project.getName()); - File selectionsDirectory = new File(projectDirectory, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File selectionDirectory = new File(selectionsDirectory, selection.getName()); - File resultsDirectory = new File(selectionDirectory, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File resultDirectory = new File(resultsDirectory, rsufiResult.getName()); - - projectService.saveRSufiResult(resultDirectory, rsufiResult); - } - } - - /** - * Met à jour les fichiers de propriétés des resultats (maps, dataSource) - * and check for duplicated couple (zoneid/resulttype (map) upload). - * - * @param selectedResults result id to check - * @throws CoserBusinessException - */ - protected void checkDataCollision(Collection<RSufiResultPath> selectedResults) throws CoserBusinessException { - - Collection<String> resultZoneTypeIds = new ArrayList<String>(); - - for (RSufiResultPath selectedResult : selectedResults) { - Project project = selectedResult.getProject(); - Selection selection = selectedResult.getSelection(); - RSufiResult rsufiResult = selectedResult.getRsufiResult(); - - // on creer une clé composé pour l'id du resultat - String resultZoneTypeId = rsufiResult.getZone() + String.valueOf(rsufiResult.isMapsResult()); - if (resultZoneTypeIds.contains(resultZoneTypeId)) { - throw new CoserBusinessException(t("coser.business.resultupload.duplicatedresult", - project.getName(), selection.getName(), rsufiResult.getName(), rsufiResult.getZone())); - } else { - resultZoneTypeIds.add(resultZoneTypeId); - } - } - } - - /** - * Aggrege plusieurs file filters. - */ - protected static class MultipleFileFilter implements FileFilter { - protected Collection<FileFilter> fileFilters = new ArrayList<FileFilter>(); - - public void add(FileFilter f) { - fileFilters.add(f); - } - - /* - * @see java.io.FileFilter#accept(java.io.File) - */ - @Override - public boolean accept(File pathname) { - - boolean result = false; - Iterator<FileFilter> it = fileFilters.iterator(); - while (it.hasNext() && !result) { - result = it.next().accept(pathname); - } - return result; - } - } - - /** - * Filter pour un resultat donné. - * - * Attention, implémentation que ne doit fonctionner que avec ZipUtil - * car meme si on refuse en répertoire, il redemande quand même - * les fils (et il faut qu'il les demande) - */ - protected class OneResultFileFilter implements FileFilter { - protected File projectsDirectory; - - /** Doit etre un project chargé avec nom de fichier originaux. */ - protected Project project; - protected Selection selection; - protected RSufiResult rsufi; - protected boolean exportWithData; - - public OneResultFileFilter(File projectsDirectory, Project project, Selection selection, RSufiResult rsufi, boolean exportWithData) { - this.projectsDirectory = projectsDirectory; - this.project = project; - this.selection = selection; - this.rsufi = rsufi; - this.exportWithData = exportWithData; - } - - /* - * @see java.io.FileFilter#accept(java.io.File) - */ - @Override - public boolean accept(File pathname) { - - boolean result = false; - - try { - String currentPathName = pathname.getCanonicalPath() + File.separator; - - File projectDirectory = new File(projectsDirectory, project.getName()); - File selectionsDirectory = new File(projectDirectory, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File selectionDirectory = new File(selectionsDirectory, selection.getName()); - File resultsDirectory = new File(selectionDirectory, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File resultDirectory = new File(resultsDirectory, rsufi.getName()); - - String projectPath = projectDirectory.getCanonicalPath() + File.separator; - String selectionsPath = selectionsDirectory.getCanonicalPath() + File.separator; - String selectionPath = selectionDirectory.getCanonicalPath() + File.separator; - String resultsPath = resultsDirectory.getCanonicalPath() + File.separator; - String resultPath = resultDirectory.getCanonicalPath() + File.separator; - - // on prend - // - tout ce qu'il y a dans le projet - // - sauf le répertoire "selections" - // - ou la selection entierement - // - sauf le répertoire result - // - ou le resultat entierrement - result = (currentPathName.startsWith(projectPath) - && !currentPathName.startsWith(selectionsPath)) - || (currentPathName.startsWith(selectionPath) - && !currentPathName.startsWith(resultsPath)) - || currentPathName.startsWith(resultPath); - - // cas ou les données sources ne doivent pas être exporter - // condition sur les noms de fichiers ? - if (!exportWithData) { - String fileName = pathname.getName(); - - // on exclu tout les fichiers qui commencent - // par les memes noms de fichiers que ceux du projet - // (les noms de fichiers sont personnalisables) - for (Category category : Category.values()) { - if (category.isDataCategory()) { - String sourceFileName = commonService.getDataStorageFileName(project, category, null); - Matcher matcher = CoserUtils.FILENAME_SUFFIX_PATTERN.matcher(sourceFileName); - if (matcher.matches()) { - result &= !(fileName.startsWith(matcher.group(1)) && fileName.endsWith(matcher.group(2))); - } else { - result &= !fileName.startsWith(sourceFileName); - } - } - } - } - } catch (IOException ex) { - throw new RuntimeException("Can't get system canonical path"); - } - - return result; - } - } - - /** - * Traite le fichier uploade par l'application client et l'enregistre - * dans le stockage coté web. - * - * Le nouveau fichier uploadé est mergé avec l'ancien, c'est à dire: - * <ul> - * <li>dezipage dans un fichier temporaire - * <li>recuperation des noms de zones des nouveau fichiers (par type, carte/indicateur) - * <li>suppression dans l'ancien répertoire des resultats deja presents dans le nouveau (pour les conflits zone) - * <li>suppression des selections vides - * <li>suppression des projets vides - * <li>copie (avec ecrasement) des nouveaux fichiers dans l'ancien répertoire - * mais seulement pour ceux des zones concernés (partie difficile) - * </ul> - * - * TODO chatellier 20110125 l'algorithme n'est pour l'instant pas performant - * et contient pas mal de code dupliqué, mais pour la v1.0 ca ira. - * - * @param login user login - * @param archiveFile uploaded file - * @throws CoserBusinessException - */ - public void registerNewUploadedResults(String login, File archiveFile) throws CoserBusinessException { - - try { - - // dezipage dans un fichier temporaire - File tempDirectory = FileUtil.createTempDirectory("coser-upload-", "-tmp"); - ZipUtil.uncompress(archiveFile, tempDirectory); - - File projectsDirectory = config.getWebIndicatorsProjectsDirectory(); - File mapsDirectory = config.getWebMapsProjectsDirectory(); - - // recuperer les resultats actuels pour le mail de mise à jour - Map<String, String> indicatorResults = getZonesIds(projectsDirectory, true, null, null); - Map<String, String> mapsResults = getZonesIds(mapsDirectory, null, true, null); - Map<String, String> dataResults = getZonesIds(projectsDirectory, null, null, true); - - // suppression des resultats qui ont été envoyé mais - // ne sont ni maps result, ni indicator result - Map<String, String> noIndicatorsResultZoneIds = getZonesIds(tempDirectory, false, null, null); - cleanCurrentProjectDirectory(projectsDirectory, noIndicatorsResultZoneIds.keySet()); - Map<String, String> noMapsResultZoneIds = getZonesIds(tempDirectory, null, false, null); - cleanCurrentProjectDirectory(mapsDirectory, noMapsResultZoneIds.keySet()); - Map<String, String> noDataResultZoneIds = getZonesIds(tempDirectory, null, null, false); - - // recuperation des noms zone des nouveau fichiers - Map<String, String> indicatorsResultZoneIds = getZonesIds(tempDirectory, true, null, null); - // suppression dans l'ancien répertoire des resultat deja present - // dans le nouveau (pour les conflits) - cleanCurrentProjectDirectory(projectsDirectory, indicatorsResultZoneIds.keySet()); - // creation du filter qui copiera juste ce qu'il faut - FileFilter indicatorsFileFilter = getCopyFileFilter(tempDirectory, false); - // copie (avec ecrasement) des nouveaux fichiers dans l'ancien répertoire - customCopyDirectory(tempDirectory, projectsDirectory, indicatorsFileFilter); - - // recuperation des noms zone des nouveau fichiers - Map<String, String> mapsResultZoneIds = getZonesIds(tempDirectory, null, true, null); - // suppression dans l'ancien répertoire des resultat deja present - // dans le nouveau (pour les conflits) - cleanCurrentProjectDirectory(mapsDirectory, mapsResultZoneIds.keySet()); - // creation du filter qui copiera juste ce qu'il faut - FileFilter mapsFileFilter = getCopyFileFilter(tempDirectory, true); - // copie (avec ecrasement) des nouveaux fichiers dans l'ancien répertoire - customCopyDirectory(tempDirectory, mapsDirectory, mapsFileFilter); - - // recuperation des nom de resultat data - Map<String, String> dataResultZoneIds = getZonesIds(tempDirectory, null, null, true); - - FileUtils.deleteDirectory(tempDirectory); - - if (log.isInfoEnabled()) { - log.info("Unzipping file " + archiveFile + " to " + projectsDirectory); - } - - // generate email content - StringBuilder content = new StringBuilder(); - - int count = 0; - content.append(t("coser.business.notificationmail.mapsresults") + "\n"); - for (Map.Entry<String, String> noMapsResultZoneId : noMapsResultZoneIds.entrySet()) { - if (mapsResults.containsValue(noMapsResultZoneId.getValue())) { - content.append(" - " + t("coser.business.notificationmail.deleted", - getZoneFullName(noMapsResultZoneId.getKey()), - noMapsResultZoneId.getValue()) + "\n"); - count++; - } - } - for (Map.Entry<String, String> mapsResultZoneId : mapsResultZoneIds.entrySet()) { - if (!mapsResults.containsValue(mapsResultZoneId.getValue())) { - content.append(" - " + t("coser.business.notificationmail.added", - getZoneFullName(mapsResultZoneId.getKey()), - mapsResultZoneId.getValue()) + "\n"); - count++; - } - } - content.append("\n"); - - content.append(t("coser.business.notificationmail.indicatorsresults") + "\n"); - for (Map.Entry<String, String> noIndicatorsResultZoneId : noIndicatorsResultZoneIds.entrySet()) { - if (indicatorResults.containsValue(noIndicatorsResultZoneId.getValue())) { - content.append(" - " + t("coser.business.notificationmail.deleted", - getZoneFullName(noIndicatorsResultZoneId.getKey()), - noIndicatorsResultZoneId.getValue()) + "\n"); - count++; - } - - } - for (Map.Entry<String, String> indicatorsResultZoneId : indicatorsResultZoneIds.entrySet()) { - if (!indicatorResults.containsValue(indicatorsResultZoneId.getValue())) { - content.append(" - " + t("coser.business.notificationmail.added", - getZoneFullName(indicatorsResultZoneId.getKey()), - indicatorsResultZoneId.getValue()) + "\n"); - count++; - } - } - content.append("\n"); - - content.append(t("coser.business.notificationmail.dataresults") + "\n"); - for (Map.Entry<String, String> noDataResultZoneId : noDataResultZoneIds.entrySet()) { - if (dataResults.containsValue(noDataResultZoneId.getValue())) { - content.append(" - " + t("coser.business.notificationmail.deleted", - getZoneFullName(noDataResultZoneId.getKey()), - noDataResultZoneId.getValue()) + "\n"); - count++; - } - - } - for (Map.Entry<String, String> dataResultZoneId : dataResultZoneIds.entrySet()) { - if (!dataResults.containsValue(dataResultZoneId.getValue())) { - content.append(" - " + t("coser.business.notificationmail.added", - getZoneFullName(dataResultZoneId.getKey()), - dataResultZoneId.getValue()) + "\n"); - count++; - } - } - content.append("\n"); - - // send notification mails - sendNewResultNotifications(login, count, content.toString()); - - // update data date - updateDataProperties(); - } catch (IOException ex) { - throw new CoserBusinessException("Can't uncompress file", ex); - } - } - - /** - * N'utilise pas la methode de commons-fileutils, car lorsqu'un répertoire - * est refusé, il ne descend pas dans les sous répertoire alors que dans - * notre cas il le faut. - * - * @param srcDir source directory to copy - * @param destDir destination directory - * @param indicatorsFileFilter file filter for file to copy - * @throws IOException - */ - protected void customCopyDirectory(File srcDir, - File destDir, FileFilter indicatorsFileFilter) throws IOException { - List<File> files = FileUtil.getFilteredElements(srcDir, null, true); - for (File file : files) { - if (indicatorsFileFilter.accept(file)) { - String path = file.getPath().substring(srcDir.getPath().length()); - - File destFile = new File(destDir, path); - if (file.isDirectory()) { - destFile.mkdirs(); - } - else { - FileUtils.copyFile(file, destFile); - } - } - } - } - - /** - * Met à jour certaines proprietes apres la mise à jour des données. - * - * @throws CoserBusinessException - */ - protected void updateDataProperties() throws CoserBusinessException { - - File webProperties = config.getWebPropertiesFile(); - - Properties props = new Properties(); - InputStream iStream = null; - OutputStream oStream = null; - try { - if (webProperties.isFile()) { - iStream = new FileInputStream(webProperties); - props.load(iStream); - } - - props.setProperty("updateDate", String.valueOf(new Date().getTime())); - oStream = new FileOutputStream(webProperties); - props.store(oStream, "Update data"); - } catch (IOException ex) { - throw new CoserBusinessException("Can't save properties file", ex); - } - finally { - IOUtils.closeQuietly(iStream); - IOUtils.closeQuietly(oStream); - } - } - - /** - * Retourne la date de dernière mise à jour des données du site web. - * - * Retourne une date bidon, si pas de dernière mise à jour. - * - * @return last data update date - * @throws CoserBusinessException - */ - public Date getLastDataUpdateDate() throws CoserBusinessException { - Date dataUpdateDate = null; - File webProperties = config.getWebPropertiesFile(); - if (webProperties.isFile()) { - // get update date - Properties props = new Properties(); - InputStream stream = null; - try { - stream = new FileInputStream(webProperties); - props.load(stream); - - if (props.containsKey("updateDate")) { - String date = props.getProperty("updateDate"); - long time = Long.parseLong(date); - dataUpdateDate = new Date(time); - } - - } catch (IOException ex) { - throw new CoserBusinessException("Can't read properties file", ex); - } - finally { - IOUtils.closeQuietly(stream); - } - } - - if (dataUpdateDate == null) { - dataUpdateDate = new Date(0); - } - - return dataUpdateDate; - } - - /** - * Recupere dans un repertoire donné, les zoneid des resultat avec - * pour chaque id, le nom du projet associé. - * - * Les boolean sont des grands {@code Boolean} car si la valeur - * est {@code null}, on ne tient pas compte du critere lors de la recherche. - * - * @param scanDirectory le repertoire a scanner - * @param indicatorResults if true get indicator results - * @param mapResults if true get map results - * @param dataResults if true get data allowed result - * @return une map de resultid/nom visuel des projets - * @throws CoserBusinessException - */ - protected Map<String, String> getZonesIds(File scanDirectory, Boolean indicatorResults, - Boolean mapResults, Boolean dataResults) throws CoserBusinessException { - - Map<String, String> resultIds = new HashMap<String, String>(); - File[] projectFiles = scanDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - // return result depending on result type - if ( ( indicatorResults == null || rsufiResult.isIndicatorsResult() == indicatorResults ) - && - ( mapResults == null || rsufiResult.isMapsResult() == mapResults ) - && - ( dataResults == null || rsufiResult.isDataAllowed() == dataResults)) { - String resultResultId = rsufiResult.getZone(); - if (StringUtils.isNotBlank(resultResultId)) { - String resultPath = projectFile.getName() + "/" + - selectionFile.getName() + "/" + - resultFile.getName(); - resultIds.put(resultResultId, resultPath); - } - } - } - } - } - } - } - } - } - } - } - - return resultIds; - } - - /** - * Retourne un file filter qui ne copiera que les dossiers resultat - * correspondant au type demandé. Pour un resultat, le filtre devra - * egalement copier les dossiers projet et selection correspondants. - * - * @param scanDirectory directory containing result to copy - * @param mapResults result type to get - * @return aggragated file filter - * @throws CoserBusinessException - */ - protected FileFilter getCopyFileFilter(File scanDirectory, boolean mapResults) throws CoserBusinessException { - - MultipleFileFilter aggregateFileFilter = new MultipleFileFilter(); - - File[] projectFiles = scanDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - // return result depending on result type - if ( (mapResults && rsufiResult.isMapsResult()) || - (!mapResults && rsufiResult.isIndicatorsResult())) { - - Project p = new Project(projectFile.getName()); - Selection s = new Selection(selectionFile.getName()); - - OneResultFileFilter resultFileFilter = new OneResultFileFilter(scanDirectory, p, s, rsufiResult, true); - aggregateFileFilter.add(resultFileFilter); - } - } - } - } - } - } - } - } - } - } - - return aggregateFileFilter; - } - - /** - * Fait le menage dans le dossier courant des projets en supprimant - * tout les resulat qui ont un result id present dans la liste - * {@code newResultIds}. - * - * Supprime egalement les selections qui n'ont plus de résultats et - * les projets qui n'ont plus de selection. - * - * @param projectsDirectory projectsDirectory - * @param newResultIds new ids - * @throws CoserBusinessException - */ - protected void cleanCurrentProjectDirectory(File projectsDirectory, Collection<String> newResultIds) throws CoserBusinessException { - - try { - File[] projectFiles = projectsDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - int projectSelectionCount = 0; - - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - int selectionResultCount = 0; - - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - String resultResultId = rsufiResult.getZone(); - if (newResultIds.contains(resultResultId)) { - // un nouveau resulat utilsera ce resultid - FileUtils.deleteDirectory(resultFile); - } else { - // un resultat valid trouvé, selection non a supprimer - selectionResultCount++; - } - } - } - } - - // si aucun resultat valide, suppression de la seletion - if (selectionResultCount == 0) { - FileUtils.deleteDirectory(selectionFile); - } else { - projectSelectionCount++; - } - } - } - } - - // si aucune selection avec resultat, suppression du projet - if (projectSelectionCount == 0) { - FileUtils.deleteDirectory(projectFile); - } - } - } - } - } catch (IOException ex) { - throw new CoserBusinessException("Can't delete directory", ex); - } - } - - /** - * Envoi un mail de notification apres la publication des resultat à la - * liste des adresses email renseignées dans la configuration. - * - * @param login user login - * @param count updated data count - * @param detail body mail detail - */ - protected void sendNewResultNotifications(String login, int count, String detail) { - List<String> emails = config.getNewResultNotificationList(); - - for (String email : emails) { - try { - MultiPartEmail emailPart = new MultiPartEmail(); - emailPart.setHostName(config.getSmtpHost()); - emailPart.addTo(email); - emailPart.setFrom("noreply-coser@ifremer.fr", "Coser"); - emailPart.setSubject(t("coser.business.notificationmail.subject", count)); - emailPart.setContent(t("coser.business.notificationmail.body", login, detail), "text/plain; charset=ISO-8859-9"); - - // send mail - emailPart.send(); - } catch (EmailException ex) { - if (log.isErrorEnabled()) { - log.error("Can't send mail", ex); - } - } - } - } - - /** - * Recuperer la liste des populations pour une zone donnée. - * - * @param zone zone id - * @return map species nom info>nom officiel - * @param forMap for map directory - * @throws CoserBusinessException - */ - public Map<String, String> getSpecies(String zone, boolean forMap) throws CoserBusinessException { - return getSpecies(Collections.singleton(zone), forMap); - } - - /** - * Recuperer la liste des populations pour un ensemble de zones donnée. - * - * @param zones zones ids - * @return map species nom info>nom officiel - * @param forMap for map directory - * @throws CoserBusinessException - */ - public Map<String, String> getSpecies(Collection<String> zones, boolean forMap) throws CoserBusinessException { - - Map<String, String> result = new TreeMap<String, String>(); - - File projectsDirectory = null; - if (forMap) { - projectsDirectory = config.getWebMapsProjectsDirectory(); - } - else { - projectsDirectory = config.getWebIndicatorsProjectsDirectory(); - } - - File[] projectFiles = projectsDirectory.listFiles(); - - // parcours des resultats disponibles - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - - // selection iteration - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - - // result iteration - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - // extraction des especes pour le résultat demandé - if (rsufiResult.getZone() != null && zones.contains(rsufiResult.getZone())) { - - // load project (without data to get reftax data) - Project project = projectService.openProject(projectFile.getName(), projectsDirectory); - - Map<String, String> resultSpecies = getRsufiResultSpecies(project, resultFile, rsufiResult); - result.putAll(resultSpecies); - } - } - } - } - } - } - } - } - } - } - - return result; - } - - /** - * Recupere la liste de toutes les especes nom sci et nom off à partir - * d'un resultat. - * - * @param project project - * @param resultDirectory rsufi result directory - * @param rsufiResult rsufi result - * @return map with each species code/species name - * @throws CoserBusinessException - */ - protected Map<String, String> getRsufiResultSpecies(Project project, File resultDirectory, RSufiResult rsufiResult) throws CoserBusinessException { - Map<String, String> result = new HashMap<String, String>(); - - // load reftax in memory - Map<String, String> speciesNames = new HashMap<String, String>(); - Iterator<String[]> reftax = project.getRefTaxSpecies().iterator(true); - while (reftax.hasNext()) { - String[] tuple = reftax.next(); - - // "C_Perm","NumSys","NivSys","C_VALIDE","L_VALIDE","AA_VALIDE","C_TxP\u00E8re","Taxa" - String speciesCode = tuple[3]; - // nom + auteur (sans ajout de parenthese : important) - String speciesName = tuple[4] + " " + tuple[5]; - - speciesNames.put(speciesCode, speciesName); - } - - // un peu lourd mais reconstruit le path jusqu'au fichier estcomind - File estPopIndFile = new File(resultDirectory, rsufiResult.getEstPopIndName()); - - // Campagne Indicateur Liste Espece Strate Annee Estimation EcartType CV - DataStorage dataStorage = commonService.loadCSVFile(estPopIndFile, CoserConstants.CSV_RESULT_SEPARATOR_CHAR); - - Iterator<String[]> estPopIndIterator = dataStorage.iterator(true); - while (estPopIndIterator.hasNext()) { - String[] tuple = estPopIndIterator.next(); - - String specyCode = tuple[3]; - String specyName = speciesNames.get(specyCode); - - if (StringUtils.isNotEmpty(specyName)) { - result.put(specyCode, specyName); - } - } - - return result; - } - - /** - * Retourne les indicateurs calculés avec leurs traductions scientifique - * pour la zone et l'especes souhaitées. - * - * @param zone zone id - * @param species especes (if {@code null} look for com indicators) - * @param locale locale - * @return la liste des indicateurs - * @throws CoserBusinessException - */ - public Map<String, String> getIndicators(String zone, String species, Locale locale) throws CoserBusinessException { - Map<String, String> indicators = new TreeMap<String, String>(); - - // parcours des resultats disponibles - File projectsDirectory = config.getWebIndicatorsProjectsDirectory(); - File[] projectFiles = projectsDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - - // selection iteration - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - - // result iteration - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - // extraction des especes pour le résultat demandé - if (rsufiResult.getZone() != null && rsufiResult.getZone().equals(zone)) { - - Map<String, String> resultIndicators = null; - - if (species == null) { - resultIndicators = getRsufiResultComIndicators(resultFile, rsufiResult, locale); - } - else { - resultIndicators = getRsufiResultPopIndicators(resultFile, rsufiResult, species, locale); - } - indicators.putAll(resultIndicators); - break; - } - } - } - } - } - } - } - } - } - } - - return indicators; - } - - /** - * Retourne les indicateurs calculés avec leurs traductions scientifique - * pour les zones souhaitées. Retournes les indicateurs de populations - * de de communauté à la fois. - * - * @param zones zones id - * @param dataType data type - * @param locale locale - * @return la liste des indicateurs - * @throws CoserBusinessException - * @since 1.4 - */ - public Map<String, String> getIndicators(Collection<String> zones, DataType dataType, Locale locale) throws CoserBusinessException { - Map<String, String> indicators = new TreeMap<String, String>(); - - // parcours des resultats disponibles - File projectsDirectory = config.getWebIndicatorsProjectsDirectory(); - File[] projectFiles = projectsDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - - // selection iteration - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - - // result iteration - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - // extraction des especes pour le résultat demandé - if (zones.contains(rsufiResult.getZone())) { - - Map<String, String> resultIndicators = null; - if (dataType == DataType.COMMUNITY) { - resultIndicators = getRsufiResultComIndicators(resultFile, rsufiResult, locale); - indicators.putAll(resultIndicators); - } - if (dataType == DataType.POPULATION) { - resultIndicators = getRsufiResultPopIndicators(resultFile, rsufiResult, null, locale); - indicators.putAll(resultIndicators); - } - } - } - } - } - } - } - } - } - } - } - - return indicators; - } - - /** - * Recupere la liste de toutes les especes nom sci et nom off à partir - * d'un resultat. - * - * @param resultDirectory rsufi result directory - * @param rsufiResult result - * @param species to get indicator (can be {@code null} to not filter on species) - * @param locale locale - * @return indicator for species - * @throws CoserBusinessException - */ - protected Map<String, String> getRsufiResultPopIndicators(File resultDirectory, RSufiResult rsufiResult, String species, Locale locale) throws CoserBusinessException { - - Map<String, String> result = new HashMap<String, String>(); - - IndicatorMap indicatorsMap = getIndicatorsMap(); - - // le fichier estcomind - File estPopIndFile = new File(resultDirectory, rsufiResult.getEstPopIndName()); - - // Campagne Indicateur Liste Espece Strate Annee Estimation EcartType CV - DataStorage dataStorage = commonService.loadCSVFile(estPopIndFile, CoserConstants.CSV_RESULT_SEPARATOR_CHAR); - - Iterator<String[]> estPopIndIterator = dataStorage.iterator(true); - while (estPopIndIterator.hasNext()) { - String[] tuple = estPopIndIterator.next(); - - String specyCode = tuple[3]; - if (species == null || specyCode.equals(species)) { - - String indicatorCode = tuple[1]; - String translations = indicatorsMap.getIndicatorValue(indicatorCode, locale); -// String translations = getIndicatorValue(indicatorCode, locale.getLanguage()); -// if (translations == null) { -// translations = "##" + indicatorCode + "##" + locale.getLanguage(); -// } - result.put(indicatorCode, translations); - } - } - - return result; - } - - /** - * Recupere la liste de toutes les especes nom sci et nom off à partir - * d'un resultat. - * - * @param resultDirectory rsufi result directory - * @param rsufiResult result - * @param locale locale - * @return indicator for species - * @throws CoserBusinessException - */ - protected Map<String, String> getRsufiResultComIndicators(File resultDirectory, RSufiResult rsufiResult, Locale locale) throws CoserBusinessException { - - Map<String, String> result = new HashMap<String, String>(); - - IndicatorMap indicatorsMap = getIndicatorsMap(); - - // le fichier estcomind - File estComIndFile = new File(resultDirectory, rsufiResult.getEstComIndName()); - - // Campagne Indicateur Liste Strate Annee Estimation EcartType CV - DataStorage dataStorage = commonService.loadCSVFile(estComIndFile, CoserConstants.CSV_RESULT_SEPARATOR_CHAR); - - Iterator<String[]> estPopIndIterator = dataStorage.iterator(true); - while (estPopIndIterator.hasNext()) { - String[] tuple = estPopIndIterator.next(); - - String indicatorCode = tuple[1]; - String translations = indicatorsMap.getIndicatorValue(indicatorCode, locale); -// String translations = getIndicatorValue(indicatorCode, locale.getLanguage()); -// if (translations == null) { -// translations = "##" + indicatorCode + "##" + locale.getLanguage(); -// } - result.put(indicatorCode, translations); - } - - return result; - } - - /** - * Retourne les listes sur lequel l'indicateur fournit a ete calculé. - * - * @param zone zone id - * @param indicator indicator - * @param locale locale - * @return la liste des indicateurs - * @throws CoserBusinessException - */ - public Map<String, String> getIndicatorLists(String zone, String indicator, Locale locale) throws CoserBusinessException { - // linked hash map (doit respecter l'ordre d'insertion) - Map<String, String> indicators = new LinkedHashMap<String, String>(); - - // parcours des resultats disponibles - File projectsDirectory = config.getWebIndicatorsProjectsDirectory(); - File[] projectFiles = projectsDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - - // selection iteration - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - - // result iteration - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - // extraction des especes pour le résultat demandé - if (rsufiResult.getZone() != null && rsufiResult.getZone().equals(zone)) { - - // le fichier contenant le code type espece (utile - // pour les traductions des list d'indicateur) - File codeTypeEspecesFile = new File(projectFile, CoserConstants.Category.TYPE_ESPECES.getStorageFileName()); - - Map<String, String> resultIndicators = getRsufiResultComIndicatorLists(resultFile, - rsufiResult, codeTypeEspecesFile, indicator, locale); - indicators.putAll(resultIndicators); - break; - } - } - } - } - } - } - } - } - } - } - - return indicators; - } - - /** - * Recupere les nom des listes sur lesquelle ont été calculé les - * indicateurs avec leurs traductions. - * - * @param resultDirectory rsufi result directory - * @param rsufiResult result - * @param indicator indicator - * @param locale locale - * @return indicator for species - * @throws CoserBusinessException - */ - protected Map<String, String> getRsufiResultComIndicatorLists(File resultDirectory, - RSufiResult rsufiResult, File codeTypeEspecesFile, String indicator, Locale locale) throws CoserBusinessException { - - // linked hash map (doit respecter l'ordre d'insertion) - Map<String, String> result = new LinkedHashMap<String, String>(); - - // le fichier estcomind - File estComIndFile = new File(resultDirectory, rsufiResult.getEstComIndName()); - - // Campagne Indicateur Liste Strate Annee Estimation EcartType CV - DataStorage dataStorage = commonService.loadCSVFile(estComIndFile, CoserConstants.CSV_RESULT_SEPARATOR_CHAR); - DataStorage dataStorageType = commonService.loadCSVFile(codeTypeEspecesFile, CoserConstants.CSV_SEPARATOR_CHAR); - - Iterator<String[]> estPopIndIterator = dataStorage.iterator(true); - while (estPopIndIterator.hasNext()) { - String[] tuple = estPopIndIterator.next(); - - String indicatorCode = tuple[1]; - if (indicatorCode.equals(indicator)) { - String list = tuple[2]; - - // recherche de la traduction de l'id de liste - // les liste sont a1, T1, T2 ... - String listLetter = String.valueOf(list.charAt(0)); - String translation = "## " + list + " not found ##"; - Iterator<String[]> typeIterator = dataStorageType.iterator(true); - while (typeIterator.hasNext()) { - // "Types";"Commentaire";"NumSys min";"NumSys max";"Code" - String[] tupleType = typeIterator.next(); - if (tupleType[4].equals(listLetter)) { - - // gestion du groupe "Tous" - // cas special, c'est la seule valeur du fichier - // code type espece qui a besoin d'une traduction - if (tupleType[4].equalsIgnoreCase("T")) { - if (locale != null && "fr".equals(locale.getLanguage())) { - translation = "Tous Liste " + list.charAt(1); - } else if (locale != null && "en".equals(locale.getLanguage())) { - translation = "Todo Lista " + list.charAt(1); - } else { - translation = "All List " + list.charAt(1); - } - } - else { - // ajout de la traduction du nom de liste plus le numéro - if (locale != null && "fr".equals(locale.getLanguage())) { - translation = tupleType[0] + " Liste " + list.charAt(1); - } else if (locale != null && "en".equals(locale.getLanguage())) { - translation = tupleType[0] + " Lista " + list.charAt(1); - } else { - translation = tupleType[0] + " List " + list.charAt(1); - } - } - break; - } - } - result.put(list, translation); - } - } - - return result; - } - - /** - * Retourne les indicateurs calculés avec leurs traductions scientifique - * pour la zone et l'especes souhaitées. - * - * @param zone zone id - * @param species especes (if {@code null} look for com indicators - * @param indicator indicator - * @param list indicator's list (if {@code null} look for pop indicators or no list selected - * @param locale locale - * @return la liste des indicateurs - * @throws CoserBusinessException - */ - public File getChart(String zone, String species, String indicator, String list, Locale locale) throws CoserBusinessException { - File result = null; - - IndicatorMap indicatorsMap = getIndicatorsMap(); - - // parcours des resultats disponibles - File projectsDirectory = config.getWebIndicatorsProjectsDirectory(); - File[] projectFiles = projectsDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - - // selection iteration - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - - // result iteration - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - // extraction des especes pour le résultat demandé - if (rsufiResult.getZone() != null && rsufiResult.getZone().equals(zone)) { - - // load project (without data to get reftax data) - Project project = projectService.openProject(projectFile.getName(), projectsDirectory); -// String indicatorName = getIndicatorValue(indicator, locale.getLanguage()); -// String unit = getIndicatorValue(indicator, "unit"); - String indicatorName = indicatorsMap.getIndicatorValue(indicator, locale); - String unit = indicatorsMap.getIndicatorUnit(indicator); - -// String zoneDisplayName = getZoneFullName(zone); - String zoneDisplayName = getZonesMap().getZoneFullName(zone); - - if (species == null) { - // le fichier contenant le code type espece (utile - // pour les traductions des list d'indicateur) - File codeTypeEspecesFile = new File(projectFile, CoserConstants.Category.TYPE_ESPECES.getStorageFileName()); - - // title = surveyName - indicateur - result = publicationService.getRsufiResultComChart(project, resultFile, - rsufiResult, codeTypeEspecesFile, indicator, list, - zoneDisplayName, indicatorName, unit, locale); - } - else { - // title = surveyName - indicateur - species - result = publicationService.getRsufiResultPopChart(project, resultFile, - rsufiResult, species, indicator, zoneDisplayName, indicatorName, - unit, locale); - } - break; - } - } - } - } - } - } - } - } - } - } - - return result; - } - - /** - * Retourne les indicateurs calculés avec leurs traductions scientifique - * pour la zone et l'especes souhaitées. - * - * @param zone zone id - * @param species especes (if {@code null} look for com indicators - * @param indicator indicator - * @param list indicator's list (if {@code null} look for pop indicators or no list selected - * @param locale locale - * @return la liste des indicateurs - * @throws CoserBusinessException - */ - public File getChartData(String zone, String species, String indicator, String list, Locale locale) throws CoserBusinessException { - File result = null; - - // parcours des resultats disponibles - File projectsDirectory = config.getWebIndicatorsProjectsDirectory(); - File[] projectFiles = projectsDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - - // selection iteration - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - - // result iteration - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - // extraction des especes pour le résultat demandé - if (rsufiResult.getZone() != null && rsufiResult.getZone().equals(zone)) { - result = getChartDataFile(projectsDirectory, projectFile, selectionFile, resultFile, rsufiResult, species, indicator, list, locale); - break; - } - } - } - } - } - } - } - } - } - } - - return result; - } - - /** - * Generate chart data (as csv for population and as zip for community). - * - * @param projectsDirectory projects storage directory - * @param projectDirectory current project directory - * @param selectionDirectory selection directory - * @param resultDirectory rsufi result directory - * @param rSufiResult rsufi result - * @param species species (can be null for community) - * @param indicator indicator - * @param list indicator's list (if {@code null} look for pop indicators or no list selected - * @param locale locale - * @return generated file (auto delete when jvm shutdown) - * @throws CoserBusinessException - */ - protected File getChartDataFile(File projectsDirectory, File projectDirectory, File selectionDirectory, - File resultDirectory, RSufiResult rSufiResult, String species, String indicator, String list, - Locale locale) throws CoserBusinessException { - - File result = null; - - try { - // cas community (zip avec fichier meta) - if (species == null) { - File tempDir = FileUtil.createTempDirectory("coser-chartdata-", "-tmp"); - - String surveyName = projectService.getProjectSurveyName(resultDirectory, rSufiResult); - File baseDir = new File(tempDir, surveyName); - baseDir.mkdirs(); - - File csvFile = publicationService.getRsufiResultComChartData(resultDirectory, rSufiResult, indicator, list); - File csvFileCopied = new File(baseDir, indicator + ".csv"); - FileUtils.copyFile(csvFile, csvFileCopied); - csvFile.delete(); - - // ajout du fichier d'information sur les espèces incluses dans - // les calculs des indicateurs de communautés - // load project (without data to get reftax data) - Project project = projectService.openProject(projectDirectory.getName(), projectsDirectory); - Selection selection = project.getSelections().get(selectionDirectory.getName()); - File metaFile = generateMetaFilePDF(project, selection, resultDirectory, rSufiResult, indicator, locale); - File metaFileCopied = new File(baseDir, "Information.pdf"); - FileUtils.copyFile(metaFile, metaFileCopied); - - // make zip - result = File.createTempFile("coser-chartdata-", ".zip"); - result.deleteOnExit(); - ZipUtil.compress(result, baseDir); - - // clean directory - FileUtils.deleteDirectory(tempDir); - } - else { - // cas pop, fichier csv brut - result = publicationService.getRsufiResultPopChartData(resultDirectory, rSufiResult, species, indicator); - } - - } catch (IOException ex) { - throw new CoserBusinessException("Can't generate chart data file", ex); - } - - return result; - } - - /** - * Recupere le fichier image de la carte demandées en fonction de la zone - * et de l'espece. - * - * Retourne également la repartition globale sur la zone si le nom de - * l'espece est {@code null}. - * - * @param zone zone (zoneid) - * @param species species or (null to get <survey>_Repartition-stations.png map file) - * @return map file - * @throws CoserBusinessException - */ - public File getMapFile(String zone, String species) throws CoserBusinessException { - - File result = null; - - // parcours des resultats disponibles - File projectsDirectory = config.getWebMapsProjectsDirectory(); - File[] projectFiles = projectsDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - - // selection iteration - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - - // result iteration - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - // extraction des especes pour le résultat demandé - if (rsufiResult.getZone() != null && rsufiResult.getZone().equals(zone) && rsufiResult.isMapsResult()) { - // get survey name (other condition) - String surveyName = projectService.getProjectSurveyName(resultFile, rsufiResult); - - String mapName = null; - if (species != null) { - mapName = surveyName + "_" + species.toUpperCase() + ".png"; - } - else { - mapName = surveyName + "_Repartition-stations.png"; - } - - File mapsDirectory = new File(resultFile, CoserConstants.STORAGE_MAPS_DIRECTORY); - result = new File(mapsDirectory, mapName); - } - } - } - } - } - } - } - } - } - } - - return result; - } - - /** - * Genere un fichier zip des sources d'un projet. - * - * Contient: - * <ul> - * <li>les 4 fichiers apres sélection - * <li>un fichier de décharge (pdf) - * </ul> - * - * @param zone zone (zoneid-surveyname) - * @param locale locale - * @return zip source file (auto delete when jvm shutdown) - * @throws CoserBusinessException - */ - public File getSourceZip(String zone, Locale locale) throws CoserBusinessException { - - File result = null; - - // parcours des resultats disponibles - File projectsDirectory = config.getWebIndicatorsProjectsDirectory(); - File[] projectFiles = projectsDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - - // selection iteration - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - - // result iteration - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - // extraction des especes pour le résultat demandé - if (rsufiResult.getZone() != null && rsufiResult.getZone().equals(zone)) { - - // load project (with data to get original file names) - Project project = projectService.openProject(projectFile.getName(), projectsDirectory); - - // load selection data (to do data export rsufi) - Selection selection = project.getSelections().get(selectionFile.getName()); - - // be sure that data are available for this project - // or it will fail - projectService.loadSelectionData(projectsDirectory, project, selection); - - result = generateSourceZip(project, selection, resultFile, rsufiResult, locale); - } - } - } - } - } - } - } - } - } - } - - return result; - } - - /** - * Generate zip for selection. - * - * Be sure that data are available for this project. - * - * @param project project - * @param selection selection with loaded data - * @param resultDirectory rsufi result directory - * @param rSufiResult rsufi result - * @param locale generated pdf locale - * @return generated zip file (auto delete when jvm shutdown) - * @throws CoserBusinessException - */ - protected File generateSourceZip(Project project, Selection selection, File resultDirectory, - RSufiResult rSufiResult, Locale locale) throws CoserBusinessException { - - if (!rSufiResult.isDataAllowed()) { - throw new CoserBusinessException("Can't download source for non allowed result"); - } - - File resultZip = null; - - try { - File tempDir = FileUtil.createTempDirectory("coser-source-", "-tmp"); - - // il ne faut pas les fichiers de selection, mais leurs - // export rsufi (sans les lignes, et les quotes) - File archiveDir = projectService.extractRSUfiData(project, selection, tempDir, true); - - // add decharge file - String filename = null; - if (locale != null && "fr".equals(locale.getLanguage())) { - filename = "DechargeDonnees.pdf"; - } else if (locale != null && "es".equals(locale.getLanguage())) { - filename = "DatosDeExencionDeResponsabilidad.pdf"; - } else { - filename = "DataDisclaimer.pdf"; - } - File dechargePDF = new File(archiveDir, filename); - generateDechargePDF(dechargePDF, resultDirectory, rSufiResult, locale); - - // ajout du reftax dans le zip - File projectsDirectory = config.getWebIndicatorsProjectsDirectory(); - File projectDirectory = new File(projectsDirectory, project.getName()); - File reftaxFile = new File(projectDirectory, CoserConstants.Category.REFTAX_SPECIES.getStorageFileName()); - FileUtils.copyFileToDirectory(reftaxFile, archiveDir); - - // make zip - resultZip = File.createTempFile("coser-source-", ".zip"); - resultZip.deleteOnExit(); - ZipUtil.compress(resultZip, archiveDir); - - // clean directory - FileUtils.deleteDirectory(tempDir); - } catch (IOException ex) { - throw new CoserBusinessException("Can't create zip file", ex); - } - - return resultZip; - } - - /** - * Genere le PDF dynamique de decharge à partir du template freemarker. - * - * @param disclamerPdf pdf file to generate - * @param resultDirectory rsufi result directory - * @param rSufiResult rsufi result - * @param locale generated pdf locale - * @return le fichier généré - * @throws CoserBusinessException - */ - protected File generateDechargePDF(File disclamerPdf, File resultDirectory, RSufiResult rSufiResult, Locale locale) throws CoserBusinessException { - - File result = null; - - OutputStream os = null; - - try { - // get some info to put into pdf - Date updateDate = getLastDataUpdateDate(); - - // il se peut que pour l'extraction un fichier de décharge ne soit - // pas généré pour une campagne en particulier - // on passe un nom vide a freemarker - String surveyName = ""; - if (resultDirectory != null && rSufiResult != null) { - surveyName = projectService.getProjectSurveyName(resultDirectory, rSufiResult); - } - - // render freemarker template - Template mapTemplate = freemarkerConfiguration.getTemplate("decharge.ftl", locale); - - Map<String, Object> root = new HashMap<String, Object>(); - root.put("updateDate", updateDate); - root.put("surveyName", surveyName); - - Writer out = new StringWriter(); - mapTemplate.process(root, out); - out.flush(); - - // get content as w3c document - Document document = CoserUtils.parseDocument(out.toString()); - - // render template output as pdf - os = new FileOutputStream(disclamerPdf); - - ITextRenderer renderer = new ITextRenderer(); - renderer.setDocument(document, null); - renderer.layout(); - renderer.createPDF(os); - - os.close(); - } catch (IOException ex) { - throw new CoserBusinessException("Can't generate decharge file", ex); - } catch (TemplateException ex) { - throw new CoserBusinessException("Can't generate decharge file", ex); - } catch (DocumentException ex) { - throw new CoserBusinessException("Can't generate decharge file", ex); - } finally { - IOUtils.closeQuietly(os); - } - - return result; - } - - /** - * Genere le fichier PDF d'information sur les espèces incluses dans les - * calculs des indicateurs de communautés, à jointe à chaque téléchargement. - * - * @param project project - * @param selection selection - * @param resultDirectory result directory - * @param rsufiResult rsufi result - * @param indicator indicator - * @param locale locale - * @return generated pdf file - * @throws CoserBusinessException - */ - protected File generateMetaFilePDF(Project project, Selection selection, File resultDirectory, - RSufiResult rsufiResult, String indicator, Locale locale) throws CoserBusinessException { - - File result = null; - - // chargement du reftax et des code types especes pour connaitre - // le type des especes de poissons - // parcourt du fichier des types de données - Map<String, Integer> refTaxSpeciesNumSys = new HashMap<String, Integer>(); - Map<String, String> refTaxSpeciesName = new HashMap<String, String>(); - Iterator<String[]> itReftax = project.getRefTaxSpecies().iterator(true); - while (itReftax.hasNext() ) { - String[] tuple = itReftax.next(); - // "C_Perm","NumSys","NivSys","C_VALIDE","L_VALIDE","AA_VALIDE","C_TxP\u00E8re","Taxa" - String speciesCode = tuple[3]; - Integer iNumSys = Integer.valueOf(tuple[1]); - refTaxSpeciesNumSys.put(speciesCode, iNumSys); - - // fix html entities bug - String speciesSciName = StringEscapeUtils.escapeXml(tuple[4]); - String speciesAuthor = StringEscapeUtils.escapeXml(tuple[5]); - - // TODO little hack for italic species - refTaxSpeciesName.put(speciesCode, "<span style='font-style:italic'>" + speciesSciName + "</span> " + speciesAuthor); - } - - // code type / especes - Map<String, Integer[]> specyTypes = new HashMap<String, Integer[]>(); - Iterator<String[]> itTypeSpecies = project.getTypeEspeces().iterator(true); - while (itTypeSpecies.hasNext()) { - // "Types";"Commentaire";"NumSys min";"NumSys max","Code" - String[] tuple = itTypeSpecies.next(); - String specyTypeCode = tuple[4]; - - Integer iMinNumSys = Integer.valueOf(tuple[2]); - Integer iMaxNumSys = Integer.valueOf(tuple[3]); - specyTypes.put(specyTypeCode, new Integer[]{iMinNumSys, iMaxNumSys}); - } - - // le fichier estpopind - File estComIndFile = new File(resultDirectory, rsufiResult.getEstComIndName()); - - // donnees intermediare (map liste id > liste des indicateurs) - Map<String, SortedSet<String>> indicatorMap = new HashMap<String, SortedSet<String>>(); - - // le resutat sera une map complexe - // map liste id > liste des especes (nom complet) - Map<String, SortedSet<String>> speciesMap = new HashMap<String, SortedSet<String>>(); - - IndicatorMap indicatorsMap = getIndicatorsMap(); - - // Campagne Indicateur Liste Strate Annee Estimation EcartType CV - DataStorage dataStorage = commonService.loadCSVFile(estComIndFile, CoserConstants.CSV_RESULT_SEPARATOR_CHAR); - Iterator<String[]> estComIndIterator = dataStorage.iterator(true); - while (estComIndIterator.hasNext()) { - String[] tuple = estComIndIterator.next(); - - String indicatorCode = tuple[1]; - String listIdCode = tuple[2]; // c1, p2, T3 ... - - String listNumber = listIdCode.substring(1); // 1, 2, 3 - - // get indicator list - SortedSet<String> indicatorList = indicatorMap.get(listNumber); - if (indicatorList == null) { - indicatorList = new TreeSet<String>(); - indicatorMap.put(listNumber, indicatorList); - } - - // get indicator full name - String indicatorName = indicatorsMap.getIndicatorValue(indicatorCode, locale.getLanguage()); -// String indicatorName = getIndicatorValue(indicatorCode, locale.getLanguage()); - // peut arriver pour les indicateurs inconnu par coser - if (indicatorName != null) { - indicatorList.add(indicatorName); - } - } - - // seconde pass, remplit la map speciesMap avec les listes configurées - // dans la selection - for (String listNumber : indicatorMap.keySet()) { - List<String> selectionSpeciesList = null; - if ("1".equals(listNumber)) { - selectionSpeciesList = selection.getSelectedSpecies(); - } - else if ("2".equals(listNumber)) { - selectionSpeciesList = selection.getSelectedSpeciesOccDens(); - } - else if ("3".equals(listNumber)) { - selectionSpeciesList = selection.getSelectedSpeciesSizeAllYear(); - } - else if ("4".equals(listNumber)) { - selectionSpeciesList = selection.getSelectedSpeciesMaturity(); - } - - if (selectionSpeciesList != null) { - SortedSet<String> speciesList = new TreeSet<String>(); - - for (String speciesCode : selectionSpeciesList) { - // get species full name - String speciesName = refTaxSpeciesName.get(speciesCode); - - // recupere le code type de l'espece, "m", "c", "p" ... - Integer speciesNumSys = refTaxSpeciesNumSys.get(speciesCode); - for (Map.Entry<String, Integer[]> speciesTypeEntry : specyTypes.entrySet()) { - String speciesTypeCode = speciesTypeEntry.getKey(); - Integer[] bound = speciesTypeEntry.getValue(); - - if (speciesNumSys >= bound[0] && speciesNumSys <= bound[1]) { - speciesName = "(" + speciesTypeCode + ") " + speciesName; - break; - } - } - // end code type espece - - speciesList.add(speciesName); - } - speciesMap.put(listNumber, speciesList); - } - else { - if (log.isWarnEnabled()) { - log.warn("Can't get species list for list id " + listNumber); - } - } - } - - OutputStream os = null; - try { - // render freemarker template - Template mapTemplate = freemarkerConfiguration.getTemplate("metainfo.ftl", locale); - - Map<String, Object> root = new HashMap<String, Object>(); - root.put("indicatorsMap", indicatorMap); - root.put("speciesMap", speciesMap); - - Writer out = new StringWriter(); - mapTemplate.process(root, out); - out.flush(); - - // get content as w3c document - Document document = CoserUtils.parseDocument(out.toString()); - - // render template output as pdf - result = File.createTempFile("coser-metainfo-", ".pdf"); - result.deleteOnExit(); - os = new FileOutputStream(result); - - ITextRenderer renderer = new ITextRenderer(); - renderer.setDocument(document, null); - renderer.layout(); - renderer.createPDF(os); - - os.close(); - } catch (IOException ex) { - throw new CoserBusinessException("Can't generate meta info file", ex); - } catch (TemplateException ex) { - throw new CoserBusinessException("Can't generate meta info file", ex); - } catch (DocumentException ex) { - throw new CoserBusinessException("Can't generate meta info file", ex); - } finally { - IOUtils.closeQuietly(os); - } - - return result; - } - - /** - * Recupere dans le repertoire des projets d'indicateur les resultats - * disponible par zone (il ne peut y en avoir qu'un par zone). - * - * @return une map avec par zone, son resultat associé (ProjectName/SelectionName) - * @throws CoserBusinessException - */ - public Map<String, String> getIndicatorsResultsPerZone() throws CoserBusinessException { - return getResultsPerZone(config.getWebIndicatorsProjectsDirectory()); - } - - /** - * Recupere dans le repertoire des projets d'indicateur les resultats - * disponible par zone (il ne peut y en avoir qu'un par zone). - * - * @return une map avec par zone, son resultat associé (ProjectName/SelectionName) - * @throws CoserBusinessException - */ - public Map<String, String> getMapsResultsPerZone() throws CoserBusinessException { - return getResultsPerZone(config.getWebMapsProjectsDirectory()); - } - - /** - * Recupere dans le repertoire des projets d'indicateur les resultats - * disponible par zone (il ne peut y en avoir qu'un par zone). - * - * @param scanDirectory le repertoire a scanner - * @return une map avec par zone, son resultat associé (ProjectName/SelectionName/RSUfiName) - * @throws CoserBusinessException - */ - protected Map<String, String> getResultsPerZone(File scanDirectory) throws CoserBusinessException { - - Map<String, String> resultIds = new HashMap<String, String>(); - File[] projectFiles = scanDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - String resultResultId = rsufiResult.getZone(); - String name = projectFile.getName() + "/" + selectionFile.getName() - + "/" + resultFile.getName(); - resultIds.put(resultResultId, name); - } - } - } - } - } - } - } - } - } - - return resultIds; - } - - /** - * Supprime des résultats par leur identifiant de zone de ratachement (car - * un seul resultat par zone). - * - * Utilisé par l'interface d'admin. - * @param deleteZoneId - * @throws CoserBusinessException - */ - public void deleteIndicatorsResult(List<String> deleteZoneId) throws CoserBusinessException { - cleanCurrentProjectDirectory(config.getWebIndicatorsProjectsDirectory(), deleteZoneId); - } - - /** - * Supprime des résultats par leur identifiant de zone de ratachement (car - * un seul resultat par zone). - * - * Utilisé par l'interface d'admin. - * @param deleteZoneId - * @throws CoserBusinessException - */ - public void deleteMapsResult(List<String> deleteZoneId) throws CoserBusinessException { - cleanCurrentProjectDirectory(config.getWebMapsProjectsDirectory(), deleteZoneId); - } - -// /** -// * Extrait de toutes les données les informations demandées restreintes -// * sur certaines zone, certaines espèces et certains indicateurs. -// * -// * Ajout en plus dans le zip les cartes, les sources... suivant les -// * types selectionnés. -// * -// * @param zones zones -// * @param types types -// * @param species species -// * @param comIndicators indicators -// * @param popIndicators indicators -// * @return le zip -// * @since 1.4 -// */ -// public File extractData(List<String> zones, List<DataType> types, List<String> species, -// List<String> comIndicators, List<String> popIndicators, Locale locale) throws CoserBusinessException { -// -// File resultZip = null; -// File tempDir = null; -// try { -// tempDir = FileUtil.createTempDirectory("coser-extract-", "-tmp"); -// -// File subDir = new File(tempDir, "Indicateurs_Ifremer"); -// subDir.mkdirs(); -// -// // les sources se retrouve dans le zip a cote du pdf -// if (types.contains(DataType.SOURCE)) { -// if (log.isDebugEnabled()) { -// log.debug("Extracting sources"); -// } -// File srcDir = new File(subDir, "sources"); -// extractSource(zones, srcDir); -// } -// -// // les cartes doivent se retrouver dans le pdf -// MultiKeyMap pdfMaps = null; -// if (types.contains(DataType.MAP)) { -// if (log.isDebugEnabled()) { -// log.debug("Extracting maps"); -// } -// pdfMaps = extractDataMap(zones, species); -// } -// -// // les graphiques sont également dans le pdf -// MultiKeyMap pdfCharts = null; -// if (CollectionUtils.isNotEmpty(comIndicators) || CollectionUtils.isNotEmpty(popIndicators)) { -// if (log.isDebugEnabled()) { -// log.debug("Extracting charts"); -// } -// pdfCharts = extractCharts(zones, species, comIndicators, popIndicators, locale); -// } -// -// // generate pdf if necessary -// if (MapUtils.isNotEmpty(pdfMaps) || MapUtils.isNotEmpty(pdfCharts)) { -// generateExtractPDF(subDir, zones, pdfMaps, pdfCharts, locale); -// } -// -// // fichier de décharge en pdf -// String filename = null; -// if (locale != null && "fr".equals(locale.getLanguage())) { -// filename = "DechargeDonnees.pdf"; -// } else if (locale != null && "es".equals(locale.getLanguage())) { -// filename = "DatosDeExencionDeResponsabilidad.pdf"; -// } else { -// filename = "DataDisclaimer.pdf"; -// } -// File dechargePDF = new File(subDir, filename); -// generateDechargePDF(dechargePDF, null, null, locale); -// -// // make zip -// resultZip = File.createTempFile("coser-extract-", ".zip"); -// resultZip.deleteOnExit(); -// ZipUtil.compress(resultZip, subDir); -// -// // clean directory -// FileUtils.deleteDirectory(tempDir); -// } catch (IOException ex) { -// throw new CoserBusinessException("Can't create zip file", ex); -// } finally { -// // clean directory -// FileUtils.deleteQuietly(tempDir); -// } -// return resultZip; -// } - - /** - * Extrait les cartes. - * - * @param zones zones (zoneid) - * @param species species - * @return map file (zone/speciesname/mapfile) - * @throws CoserBusinessException - * @throws IOException - * @since 1.4 - */ - protected MultiKeyMap extractDataMap(Collection<String> zones, Collection<String> species) throws CoserBusinessException, IOException { - - MultiKeyMap mapForZoneAndSpecies = new MultiKeyMap(); - - // parcours des resultats disponibles - File projectsDirectory = config.getWebMapsProjectsDirectory(); - File[] projectFiles = projectsDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - - // selection iteration - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - - // result iteration - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - // extraction des especes pour le résultat demandé - if (rsufiResult.isMapsResult() && zones.contains(rsufiResult.getZone())) { - - // load project (to get user display species name) - Project project = projectService.openProject(projectFile.getName(), projectsDirectory); - - // get survey name (other condition) - String surveyName = projectService.getProjectSurveyName(resultFile, rsufiResult); - - File mapsDirectory = new File(resultFile, CoserConstants.STORAGE_MAPS_DIRECTORY); - for (String aSpecies : species) { - String mapName = surveyName + "_" + aSpecies.toUpperCase() + ".png"; - File mapFile = new File(mapsDirectory, mapName); - if (mapFile.isFile()) { - String speciesName = project.getDisplaySpeciesText(aSpecies); - mapForZoneAndSpecies.put(rsufiResult.getZone(), speciesName, mapFile); - } - } - } - } - } - } - } - } - } - } - } - } - - return mapForZoneAndSpecies; - } - - /** - * Genere un fichier zip des sources d'un projet. - * - * Contient: - * <ul> - * <li>les 4 fichiers apres sélection - * </ul> - * - * @param zones zone (zoneid-surveyname) - * @return zip source file (auto delete when jvm shutdown) - * @throws CoserBusinessException - * @since 1.4 - */ - protected File extractSource(Collection<String> zones, File directory) throws CoserBusinessException { - - File result = null; - - // parcours des resultats disponibles - File projectsDirectory = config.getWebIndicatorsProjectsDirectory(); - File[] projectFiles = projectsDirectory.listFiles(); - if (projectFiles != null) { - for (File projectFile : projectFiles) { - if (projectFile.isDirectory()) { - File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); - File[] selectionFiles = selectionsDirectory.listFiles(); - - // selection iteration - if (selectionFiles != null) { - for (File selectionFile : selectionFiles) { - if (selectionFile.isDirectory()) { - File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); - File[] resultFiles = resultsDirectory.listFiles(); - - // result iteration - if (resultFiles != null) { - for (File resultFile : resultFiles) { - if (resultFile.isDirectory()) { - RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); - - // extraction des especes pour le résultat demandé - if (rsufiResult.isDataAllowed() && zones.contains(rsufiResult.getZone())) { - - // load project (with data to get original file names) - Project project = projectService.openProject(projectFile.getName(), projectsDirectory); - - // load selection data (to do data export rsufi) - Selection selection = project.getSelections().get(selectionFile.getName()); - - // be sure that data are available for this project - // or it will fail - projectService.loadSelectionData(projectsDirectory, project, selection); - - // il ne faut pas les fichiers de selection, mais leurs - // export rsufi (sans les lignes, et les quotes) - File zoneDirectory = new File(directory, rsufiResult.getZone()); - zoneDirectory.mkdirs(); - projectService.extractRSUfiData(project, selection, zoneDirectory, true); - } - } - } - } - } - } - } - } - } - } - - return result; - } - -// /** -// * Retourne les indicateurs calculés avec leurs traductions scientifique -// * pour la zone et l'especes souhaitées. -// * -// * @param zones zones -// * @param species especes (if {@code null} look for com indicators -// * @param comIndicators comIndicators -// * @param popIndicators popIndicators -// * @param locale locale -// * @return la liste des indicateurs (zone, speciesname, [graphfile, graphdata]) -// * @throws CoserBusinessException -// */ -// protected MultiKeyMap extractCharts(Collection<String> zones, Collection<String> species, -// Collection<String> comIndicators, Collection<String> popIndicators, Locale locale) throws CoserBusinessException { -// -// MultiKeyMap chartFileAndDatas = new MultiKeyMap(); -// -// // parcours des resultats disponibles -// File projectsDirectory = config.getWebIndicatorsProjectsDirectory(); -// File[] projectFiles = projectsDirectory.listFiles(); -// if (projectFiles != null) { -// for (File projectFile : projectFiles) { -// if (projectFile.isDirectory()) { -// File selectionsDirectory = new File(projectFile, CoserConstants.STORAGE_SELECTION_DIRECTORY); -// File[] selectionFiles = selectionsDirectory.listFiles(); -// -// // selection iteration -// if (selectionFiles != null) { -// for (File selectionFile : selectionFiles) { -// if (selectionFile.isDirectory()) { -// File resultsDirectory = new File(selectionFile, CoserConstants.STORAGE_RESULTS_DIRECTORY); -// File[] resultFiles = resultsDirectory.listFiles(); -// -// // result iteration -// if (resultFiles != null) { -// for (File resultFile : resultFiles) { -// if (resultFile.isDirectory()) { -// RSufiResult rsufiResult = projectService.getRSufiResult(resultFile); -// -// // extraction des especes pour le résultat demandé -// if (zones.contains(rsufiResult.getZone())) { -// -// if (log.isDebugEnabled()) { -// log.debug("Extracting charts for result " + resultFile); -// } -// -// // load project (without data to get reftax data) -// Project project = projectService.openProject(projectFile.getName(), projectsDirectory); -// String zone = rsufiResult.getZone(); -//// String zoneDisplayName = getZoneFullName(zone); -// String zoneDisplayName = getZonesMap().getZoneFullName(zone); -// -// // le fichier contenant le code type espece (utile -// // pour les traductions des list d'indicateur) -// File codeTypeEspecesFile = new File(projectFile, CoserConstants.Category.TYPE_ESPECES.getStorageFileName()); -// -// if (CollectionUtils.isNotEmpty(comIndicators)) { -// Map<String, Object[]> chartFileAndDataCom = publicationService.getRsufiResultComCharts(project, -// resultFile, rsufiResult, codeTypeEspecesFile, comIndicators, -// zoneDisplayName, getIndicatorsMap(), locale, 650, 430); -// // put in multimap as zone,speciesname, data -// for (Entry<String, Object[]> entry : chartFileAndDataCom.entrySet()) { -// chartFileAndDatas.put(zone, entry.getKey(), entry.getValue()); -// } -// } -// -// if (CollectionUtils.isNotEmpty(popIndicators)) { -// Map<String, Object[]> chartFileAndDataPop = publicationService.getRsufiResultPopCharts(project, -// resultFile, rsufiResult, species, popIndicators, -// zoneDisplayName, getIndicatorsMap(), locale, 650, 430); -// // put in multimap as zone,speciesname, data -// for (Entry<String, Object[]> entry : chartFileAndDataPop.entrySet()) { -// chartFileAndDatas.put(zone, entry.getKey(), entry.getValue()); -// } -// } -// } -// } -// } -// } -// } -// } -// } -// } -// } -// } -// -// return chartFileAndDatas; -// } - - /** - * Generate pdf file filled with maps and charts. - * - * @param directory directory to generate pdf to - * @param zones zones ids - * @param pdfMaps pdf maps (can be {@code null}) - * @param pdfCharts pdf charts (can be {@code null}) - * @throws CoserBusinessException - */ - protected void generateExtractPDF(File directory, List<String> zones, - MultiKeyMap pdfMaps, MultiKeyMap pdfCharts, Locale locale) throws CoserBusinessException { - - for (String zone : zones) { - Collection<File> toDelete = new ArrayList<File>(); - OutputStream os = null; - - try { - StringBuilder htmlContent = new StringBuilder(); - htmlContent.append("<html><head>"); - htmlContent.append("<title>" + l(locale, "coser.business.extract.extracttitle")+ "</title>"); - htmlContent.append("<meta http-equiv='Content-Type' content='text/html; charset=utf-8' />"); - htmlContent.append("</head><body>"); - - if (pdfMaps != null) { - for (Entry<MultiKey, File> mapEntry : (Set<Entry<MultiKey, File>>)pdfMaps.entrySet()) { - String zoneId = (String)mapEntry.getKey().getKey(0); - if (zoneId.equals(zone)) { - String speciesName = (String)mapEntry.getKey().getKey(1); - File file = mapEntry.getValue(); - -// String zoneName = getZoneFullName(zoneId); - String zoneName = getZonesMap().getZoneFullName(zoneId); - htmlContent.append("<div style='page-break-after: always'>"); - htmlContent.append("<p>" + zoneName + " - " + speciesName + "</p>"); - htmlContent.append("<img src='file://" + file.getAbsolutePath() + "' />"); - htmlContent.append("</div>"); - } - } - } - - if (pdfCharts != null) { - for (Entry<MultiKey, Object[]> chartFileAndData : (Set<Entry<MultiKey, Object[]>>)pdfCharts.entrySet()) { - String zoneId = (String)chartFileAndData.getKey().getKey(0); - if (zoneId.equals(zone)) { - File chartFile = (File)chartFileAndData.getValue()[0]; - String content = (String)chartFileAndData.getValue()[1]; - - htmlContent.append("<div style='page-break-after: always'>"); - htmlContent.append("<img src='file://" + chartFile.getAbsolutePath() + "' />"); - htmlContent.append("<br />"); - htmlContent.append(l(locale, "coser.business.extract.extractdata") + " :"); - htmlContent.append("<pre>").append(content).append("</pre>"); - htmlContent.append("</div>"); - - // les graphiques ont été générés, a supprimer donc - // a ne surtout pas faire avec les cartes !!! - toDelete.add(chartFile); - } - } - } - - htmlContent.append("</body></html>"); - - // get content as w3c document - Document document = CoserUtils.parseDocument(htmlContent.toString()); - - // render template output as pdf - // remove accents and strange characters from zone display name -// String zoneDisplay = getZoneFullName(zone); - String zoneDisplay = getZonesMap().getZoneFullName(zone); - zoneDisplay = StringUtils.stripAccents(zoneDisplay); - zoneDisplay = zoneDisplay.replaceAll("[^\\w- ]", "_"); - File pdfFile = new File(directory, zoneDisplay + ".pdf"); - os = new FileOutputStream(pdfFile); - - ITextRenderer renderer = new ITextRenderer(); - renderer.setDocument(document, null); - renderer.layout(); - renderer.createPDF(os); - - os.close(); - } catch (IOException ex) { - throw new CoserBusinessException("Can't generate log pdf", ex); - } catch (DocumentException ex) { - throw new CoserBusinessException("Can't generate log pdf", ex); - } finally { - IOUtils.closeQuietly(os); - - // delete file collection - for (File file : toDelete) { - file.delete(); - } - } - } - } -}