[Isis-fish-commits] r2910 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity

13 Jan 2010

Author: jcouteau
Date: 2010-01-13 15:18:13 +0000 (Wed, 13 Jan 2010)
New Revision: 2910

Modified:
   isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity/AbstractSensitivityCalculator.java
Log:
Factorize some code


Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity/AbstractSensitivityCalculator.java
===================================================================

--- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity/AbstractSensitivityCalculator.java	2010-01-13 14:20:25 UTC (rev 2909)
+++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity/AbstractSensitivityCalculator.java	2010-01-13 15:18:13 UTC (rev 2910)
@@ -19,13 +19,14 @@
 package fr.ifremer.isisfish.simulator.sensitivity;
 
 import java.io.File;
+import java.io.IOException;
 import java.util.Collection;
 import java.util.Iterator;
 import java.util.List;
 
-import fr.ifremer.isisfish.util.ConverterUtil;
+import fr.ifremer.isisfish.datastore.SimulationStorage;
+import fr.ifremer.isisfish.export.SensitivityExport;
 import org.apache.commons.beanutils.BeanUtils;
-import org.apache.commons.beanutils.ConvertUtilsBean;
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
 import org.nuiton.j2r.REngine;
@@ -38,7 +39,10 @@
 import fr.ifremer.isisfish.simulator.sensitivity.domain.MatrixContinuousDomain;
 import org.nuiton.topia.TopiaContext;
 import org.nuiton.topia.persistence.TopiaEntity;
+import org.nuiton.util.FileUtil;
 
+import javax.swing.*;
+
 public abstract class AbstractSensitivityCalculator implements
         SensitivityCalculator {
 
@@ -237,7 +241,6 @@
     }
 
     protected String getNominalValue(Factor factor){
-        ConvertUtilsBean beanUtils = ConverterUtil.getConverter(null);
         String path = factor.getPath();
         String topiaId = path.substring(0,path.lastIndexOf("#"));
         String propertyName=path.substring(path.lastIndexOf("#") + 1);
@@ -251,7 +254,98 @@
         if (value == null){
             return null;
         }
+        log.info("Nominal value :" + value);
         return value.toString();
     }
 
+    protected String editRInstruction(String rCall){
+        JLabel label = new JLabel(
+                    "Modifier le code R envoyé si vous le souhaitez");
+            JTextPane text = new JTextPane();
+            text.setText(rCall);
+            text.setSize(400, 400);
+            text.setPreferredSize(text.getSize());
+
+            Box box = Box.createVerticalBox();
+            box.add(label);
+            box.add(new JScrollPane(text));
+
+            JOptionPane.showMessageDialog(null, box, "R modif",
+                    JOptionPane.QUESTION_MESSAGE);
+            return text.getText();        
+    }
+
+    protected void testNoDiscrete(List<Factor<?,?>> factors) throws SensitivityException{
+        for (Factor factor:factors) {
+            if (factor.getDomain() instanceof DiscreteDomain) {
+                throw new SensitivityException(factor.getName() +
+                        " has a discrete domain, this is not acceptable for " +
+                        "this method.");
+            }
+        }
+    }
+
+    protected String createImportInstruction(
+            SensitivityExport export,
+            List<SimulationStorage> simulationStorages) {
+
+        //the filename to read
+        String name = export.getExportFilename();
+        //the extension to read
+        String extension = export.getExtensionFilename();
+        //the rInstruction
+        String rInstruction = name + "<-c(";
+
+        //iterate on all the simulations and read the value for each one
+        for (int l = 0; l < simulationStorages.size(); l++) {
+
+            SimulationStorage simulationStorage = simulationStorages.get(l);
+            File directory = simulationStorage.getDirectory();
+
+            String directoryPath = directory.toString() + File.separator
+                    + SimulationStorage.RESULT_EXPORT_DIRECTORY;
+
+            File importFile = new File(directoryPath, name + extension);
+
+            String simulResult="";
+            try{
+                simulResult = FileUtil.readAsString(importFile);
+            } catch (IOException ioe) {
+                log.error ("An error occured trying to read a result file : " +
+                        ioe.getMessage());
+            }
+
+
+            double simulationResult = Double.valueOf(simulResult);
+
+            if (l < simulationStorages.size() - 1) {
+                rInstruction += simulationResult + ",";
+            } else {
+                rInstruction += simulationResult;
+            }
+        }
+        rInstruction += ")";
+
+        return rInstruction;
+    }
+
+    protected void renameObjects(REngine engine, String simulationName)
+            throws RException {
+
+        String renameIsisSimule = "%s.isis.simule<-isis.simule";
+        String renameIsisFactorDistribution = "%s.isis.factor.distribution" +
+                "<-isis.factor.distribution";
+        String renameIsisFactor = "%s.isis.factor<-isis.factors";
+        String renameIsisMethodExp = "%s.isis.methodExp<-isis.MethodExp";
+
+        engine.voidEval(String.format(renameIsisSimule, simulationName));
+
+        engine.voidEval(String.format(renameIsisFactorDistribution,
+                simulationName));
+
+        engine.voidEval(String.format(renameIsisFactor, simulationName));
+
+        engine.voidEval(String.format(renameIsisMethodExp, simulationName));
+    }
+
 }

    

[Isis-fish-commits] r2910 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity

jcouteau＠users.labs.libre-entreprise.org