merci pour ta réponse, oui, j'ai bien saisi le facteur de ciblage dans les métiers. chirine ________________________________ De : Stephanie MAHEVAS <Stephanie.Mahevas@ifremer.fr> À : Liste pour les utilisateurs du simulateur <isis-fish-user@lists.labs.libre-entreprise.org> Envoyé le : Jeudi, 7 Mai 2009, 10h10mn 41s Objet : Re: [Isis-fish-user] analyse de sensibilité ll'error : Caused by: java.lang.NullPointerException at analyseplans.Sensibility.beforeSimulation(Sensibility.java:528) at fr.ifremer.isisfish.simulator.PlanGenerator.hasNext(PlanGenerator.java:120) ... 2 more dans le fichier ca correspond à la commande Equation target = season.getSpeciesTargetSpecies(pop.getSpecies()).getTargetFactorEquation(); il ne trouve pas ton facteur de ciblage es-tu sure de l'avoir bien saisi dans le metier? stephanie chirine HUSSEIN a écrit :
Bonjour à tous,
Toujours pour l’analyse de sensibilité , mon plan d’analyse pour 9 paramètres, à priori, j’ai un problème avec un seul (facteur de ciblage) , dans l’interface Editeur de script, le plan d’analyse est correcte, mais les simulations ne tournent pas, et quand j’enlève tous ce qui concerne le facture de ciblage (dans le script), les simulations tournent bien.
Je vous envoie le script du plan d’analyse, et le fichier d’erreur.
Pourrez-vous jeter un coup d’œil.
Merci bien pour l’avance.
Chirine
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jar to search C:\Documents and Settings\hussein\Bureau\isis-fish-3.1.3\isis-fish-3.1.3\lib\h2-1.0.60.jar INFO [main] (Resource.java:296) getURLs - jar to search C:\Documents and Settings\hussein\Bureau\isis-fish-3.1.3\isis-fish-3.1.3\lib\swixat-0.6.0.jar INFO [main] (Resource.java:296) getURLs - jar to search C:\Documents and Settings\hussein\Bureau\isis-fish-3.1.3\isis-fish-3.1.3\lib\cvsclient-20051129.jar INFO [main] (Resource.java:310) getURLs - search URLs pattern: .*18n/.+\.properties in 107 urls in 2,162s INFO [main] (I18nBundleManager.java:97) init - 6 bundle(s) found, [12 file(s)] in 8,252ms INFO [main] (I18nBundleManager.java:167) load - Language <locale: fr_FR, encoding: ISO-8859-1,nbStences:1176>, nbEntries: 6, nbSentences: 1176 in 14,41ms INFO [main] (IsisFish.java:104) main - Lancement Isis-fish ... [] INFO [main] (IsisFish.java:109) main - 06/05/09 16:39 Java version: 1.6.0_10-b33 Isis-fish version: 3.1.3 INFO [main] (Config.java:105) init - [main] INFO [main] (Config.java:105) init - [vcs] INFO [main] (SVNHelper.java:191) findTypeRepo - try svn url svn://labs.libre-entreprise.org/svnroot/isis-fish-data/tags (3.1.3) WARN [main] (SVNHelper.java:197) findTypeRepo - org.codelutin.vcs.VCSException: org.tmatesoft.svn.core.SVNException: svn: labs.libre-entreprise.org INFO [main] (I18nLoader.java:102) close - nb languages loaded : 1 INFO [main] (Language.java:183) close - Language <locale: fr_FR, encoding: ISO-8859-1,nbStences:1176> INFO [main] (I18nBundleManager.java:167) load - Language <locale: fr_FR, encoding: UTF-8,nbStences:1176>, nbEntries: 6, nbSentences: 1176 in 27,924ms INFO [main] (IsisFish.java:182) init - connectionState : ERROR INFO [main] (IsisFish.java:182) init - hasPreviousConfig : true INFO [main] (IsisFish.java:182) init - isTypeChanged : false INFO [main] (IsisFish.java:182) init - needMigration : false INFO [main] (MatrixFactory.java:68) <clinit> - Converter XML pour MatrixND ajoute INFO [main] (MatrixFactory.java:85) <clinit> - librairie topia non presente. Import/Export JDBC impossible INFO [main] (IsisVcsConfig.java:442) validate - [SVN] configuration is init. INFO [main] (IsisVcsConfig.java:443) validate - [SVN] remote : svnroot/isis-fish-data/trunk INFO [main] (IsisVcsConfig.java:444) validate - [SVN] local : C:\Documents and Settings\hussein\isis-database-3 INFO [main] (IsisVcsConfig.java:445) validate - [SVN] state : ERROR INFO [main] (SVNHandler.java:138) initWorkingCopy0 - repositoryURL to use : svn://labs.libre-entreprise.org/svnroot/isis-fish-data/trunk INFO [main] (IsisFish.java:138) main - after init done in 20,65s. INFO [Simulation Thread local] (SimulationManager.java:326) run - Start simulation thread INFO [Simulation Thread remote] (SimulationManager.java:326) run - Start simulation thread INFO [main] (IsisTray.java:96) getInstance - Use System tray: fr.ifremer.isisfish.IsisTray$AWTSystemTray SwixML 1.5 (#144) INFO [main] (Editor.java:124) addEditor - Can't find your editor class: org.codelutin.widget.editor.NetBeansEditor INFO [main] (Editor.java:124) addEditor - Can't find your editor class: org.codelutin.widget.editor.JEditEditor INFO [AWT-EventQueue-0] (Action.java:205) updateVCSContext - can write false INFO [AWT-EventQueue-0] (Action.java:206) updateVCSContext - can commit false INFO [AWT-EventQueue-0] (Action.java:207) updateVCSContext - can update false INFO [AWT-EventQueue-0] (Action.java:208) updateVCSContext - can delete false INFO [AWT-EventQueue-0] (Action.java:209) updateVCSContext - can diff false INFO [Thread-4] (Action.java:116) loadScript - loadScript called [AnalysePlan/AnalysePlan] INFO [Thread-4] (Action.java:205) updateVCSContext - can write false INFO [Thread-4] (Action.java:206) updateVCSContext - can commit false INFO [Thread-4] (Action.java:207) updateVCSContext - can update false INFO [Thread-4] (Action.java:208) updateVCSContext - can delete false INFO [Thread-4] (Action.java:209) updateVCSContext - can diff false **** false *****0 INFO [Thread-6] (Action.java:116) loadScript - loadScript called [AnalysePlan/Sensibility.java] INFO [Thread-6] (Action.java:205) updateVCSContext - can write false INFO [Thread-6] (Action.java:206) updateVCSContext - can commit false INFO [Thread-6] (Action.java:207) updateVCSContext - can update false INFO [Thread-6] (Action.java:208) updateVCSContext - can delete false INFO [Thread-6] (Action.java:209) updateVCSContext - can diff false Installing UI Installing HIGHLIGHT Set to 563 **** false *****0 Set to 521 Set to 720 Set to 230 Set to 125 Set to 68 Set to 75 Set to 105 Set to 470 Set to 471 Set to 462 Set to 463 Set to 464 Set to 480 Set to 478 Set to 565 Set to 548 Set to 547 Set to 546 Set to 702 Set to 703 Set to 483 Set to 482 Set to 481 Set to 480 Set to 481 Set to 482 Set to 479 Set to 478 Exception in thread "AWT-EventQueue-0" org.apache.commons.jxpath.JXPathException: Undefined function: paste at org.apache.commons.jxpath.ri.JXPathContextReferenceImpl.getFunction(JXPathContextReferenceImpl.java:645) at org.apache.commons.jxpath.ri.axes.RootContext.getFunction(RootContext.java:118) at org.apache.commons.jxpath.ri.compiler.ExtensionFunction.computeValue(ExtensionFunction.java:83) at org.apache.commons.jxpath.ri.JXPathContextReferenceImpl.getValue(JXPathContextReferenceImpl.java:314) at org.apache.commons.jxpath.ri.JXPathContextReferenceImpl.getValue(JXPathContextReferenceImpl.java:280) at org.swixat.framework.XPathUtil.applyXPath(XPathUtil.java:154) at org.swixat.framework.XPathUtil.applyXPath(XPathUtil.java:112) at org.swixat.framework.action.XPathAction.doCommand(XPathAction.java:66) at org.swixat.framework.action.ActionManager.doCommand(ActionManager.java:99) at org.swixat.framework.AbstractFrame.executeCommand(AbstractFrame.java:148) at org.swixat.framework.AbstractFrame.actionPerformed(AbstractFrame.java:95) at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.setPressed(Unknown Source) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source) at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source) at java.awt.Component.processMouseEvent(Unknown Source) at javax.swing.JComponent.processMouseEvent(Unknown Source) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Window.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) Exception in thread "AWT-EventQueue-0" org.apache.commons.jxpath.JXPathException: Undefined function: paste at org.apache.commons.jxpath.ri.JXPathContextReferenceImpl.getFunction(JXPathContextReferenceImpl.java:645) at org.apache.commons.jxpath.ri.axes.RootContext.getFunction(RootContext.java:118) at org.apache.commons.jxpath.ri.compiler.ExtensionFunction.computeValue(ExtensionFunction.java:83) at org.apache.commons.jxpath.ri.JXPathContextReferenceImpl.getValue(JXPathContextReferenceImpl.java:314) at org.apache.commons.jxpath.ri.JXPathContextReferenceImpl.getValue(JXPathContextReferenceImpl.java:280) at org.swixat.framework.XPathUtil.applyXPath(XPathUtil.java:154) at org.swixat.framework.XPathUtil.applyXPath(XPathUtil.java:112) at org.swixat.framework.action.XPathAction.doCommand(XPathAction.java:66) at org.swixat.framework.action.ActionManager.doCommand(ActionManager.java:99) at org.swixat.framework.AbstractFrame.executeCommand(AbstractFrame.java:148) at org.swixat.framework.AbstractFrame.actionPerformed(AbstractFrame.java:95) at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.setPressed(Unknown Source) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source) at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source) at java.awt.Component.processMouseEvent(Unknown Source) at javax.swing.JComponent.processMouseEvent(Unknown Source) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Window.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) INFO [AWT-EventQueue-0] (Action.java:380) saveScript - saveScript called [Sensibility.java] org.swixat.model.GenericContext@1f4ba51 INFO [Thread-11] (RegionStorage.java:207) getRegion - Try to open region Banyuls(C:\Documents and Settings\hussein\isis-database-3\regions\Banyuls) INFO [AWT-EventQueue-0] (DataStorage.java:211) getStorage - Create new storage for Banyuls **** false *****0 matrix2D [
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INFO [AWT-EventQueue-0] (SimulationHelper.java:90) message - backup database in progress INFO [AWT-EventQueue-0] (SimulationControl.java:126) setText - backup database in progress INFO [AWT-EventQueue-0] (SimulationHelper.java:90) message - backup database finished INFO [AWT-EventQueue-0] (SimulationControl.java:126) setText - backup database finished INFO [AWT-EventQueue-0] (SimulationHelper.java:90) message - Scripts and rules Compilation INFO [AWT-EventQueue-0] (SimulationControl.java:126) setText - Scripts and rules Compilation Note: C:\DOCUME~1\hussein\LOCALS~1\Temp\isisfish-simultation-1241621794109-preparation\scripts\SiMatrix.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. INFO [AWT-EventQueue-0] (SimulationHelper.java:90) message - Temps de compilation 1.021s INFO [AWT-EventQueue-0] (SimulationControl.java:126) setText - Temps de compilation 1.021s INFO [Simulation Thread local] (SimulationStorage.java:224) getSimulation - Try to open simulation 2009-05-06-16-56_0(C:\Documents and Settings\hussein\isis-database-3\simulations\ 2009-05-06-16-56_0) INFO [Simulation Thread local] (DataStorage.java:211) getStorage - Create new storage for 2009-05-06-16-56_0 mod et ligne : -1 0 result : 0.8 mod et ligne : -1 0 result : 0.8 mod et ligne : -1 0 result : 0.8 mod et ligne : -1 0 result : 0.8 mod et ligne : -1 0 result : 0.8 mod et ligne : -1 0 result : 1.55 WARN [Simulation Thread local] (SimulationManager.java:439) run - Could not save Error during simulation of 2009-05-06-16-56 in his information file fr.ifremer.isisfish.IsisFishRuntimeException: Can''t evaluate plan script at fr.ifremer.isisfish.simulator.PlanGenerator.hasNext(PlanGenerator.java:133) at fr.ifremer.isisfish.simulator.SimulationManager$QueueItem.hasNext(SimulationManager.java:529) at fr.ifremer.isisfish.simulator.SimulationManager$SimulationThread.run(SimulationManager.java:355) Caused by: java.lang.NullPointerException at analyseplans.Sensibility.beforeSimulation(Sensibility.java:528) at fr.ifremer.isisfish.simulator.PlanGenerator.hasNext(PlanGenerator.java:120) ... 2 more INFO [Simulation Thread local] (SimulationDoneQueueModel.java:92) simulationWillBeRemoved - in done model for 2009-05-06-16-56 pos 0 INFO [Simulation Thread local] (SimulationDoneQueueModel.java:95) simulationWillBeRemoved - isStopSimulationRequest : false WARN [Simulation Thread local] (SimulationManager.java:445) run - Error during simulation fr.ifremer.isisfish.IsisFishRuntimeException: Can''t evaluate plan script at fr.ifremer.isisfish.simulator.PlanGenerator.hasNext(PlanGenerator.java:133) at fr.ifremer.isisfish.simulator.SimulationManager$QueueItem.hasNext(SimulationManager.java:529) at fr.ifremer.isisfish.simulator.SimulationManager$SimulationThread.run(SimulationManager.java:355) Caused by: java.lang.NullPointerException at analyseplans.Sensibility.beforeSimulation(Sensibility.java:528) at fr.ifremer.isisfish.simulator.PlanGenerator.hasNext(PlanGenerator.java:120) ... 2 more ------------------------------------------------------------------------
package analyseplans;
import static org.codelutin.i18n.I18n._;
import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory;
import scripts.ResultName;
import java.io.*; import java.io.File; import java.io.FileReader; import java.io.Writer; import java.util.*; import java.util.Arrays; import java.util.Collection; import java.util.Collections; import java.util.HashMap; import java.util.List; import java.util.Map; import java.util.Properties;
import org.codelutin.math.matrix.*; import org.codelutin.util.*; import org.codelutin.topia.*;
import fr.ifremer.isisfish.*; import fr.ifremer.isisfish.types.*; import fr.ifremer.isisfish.rule.Rule; import fr.ifremer.isisfish.rule.RuleHelper; import fr.ifremer.isisfish.simulator.SimulationContext; import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.entities.*; import fr.ifremer.isisfish.simulator.AnalysePlan; import fr.ifremer.isisfish.simulator.AnalysePlanContext; import fr.ifremer.isisfish.simulator.SimulationParameter; import fr.ifremer.isisfish.datastore.RegionStorage; import fr.ifremer.isisfish.datastore.RuleStorage; import fr.ifremer.isisfish.datastore.SimulationStorage; import fr.ifremer.isisfish.datastore.ResultStorage;
/** * Sensibility.java * * Created: 21 décembre 2008 * * @author HUSSEIN chirine <m475chi@yahoo.fr> * */ public class Sensibility implements AnalysePlan {
/** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(Sensibility.class);
static private final String MATRIX = "matrix"; /// Le fichier est donc matrix.txt static private final String VBGF = "growth"; static private final String FECONDITY = "fecondity"; static private final String MIGRATION = "migration"; static private final String MORTALITY = "mortalite"; static private final String CATCHABILITY = "capturabilite"; static private final String FSTD = "facteurStd"; static private final String SELECTIVITY = "selectivity"; static private final String SELECTIVITYFiletMer = "selectivityFiletMer"; static private final String SELECTIVITYFiletEtang = "selectivityFiletEtang";
static private final String SELECTIVITYLignecote = "selectivityLignecote"; static private final String SELECTIVITYLigneemb = "selectivityLigneemb"; static private final String SELECTIVITYChalut = "selectivityChalut"; static private final String SELECTIVITYHarpon = "selectivityHarpon"; static private final String TARGET = "targetFact"; static private final String EFFORT = "effort"; //static private final String AMP = "amp"; //static private final String AMP1 = "ampRPrepro_Lignecote"; //static private final String AMP2 = "ampRPrepro_FiletMer"; ///////////* completer ici avec tous les fichiers .txt des amp public int param_parameterNumber = 9 ; /// ce paramètre n'est normalement pas modifié public int param_first = 0; /// on utilise ce paramètre pour indiquer à quelle ligne /// de la matrice on doit commencer à faire tourner les simulations au cas où on ait dû interompre le plan public int param_simulationNumber = 256;/// ce paramètre n'est normalement pas modifié public String param_directory = "C:/Documents and Settings/hussein/Bureau/isis-fish-3.1.3/isis-fish-3.1.3/SACSarfiles//"; /// Il s'agit du chemin vers le dossier ///contenant les fichier de matrice et paramètres, par défaut le repertoire du go.bat /// donc dans ce cas c'est le dossier Exemple_repertory qui est dans le dossier contenant le go.bat /// Déclaration de la matrice d'expérience private MatrixND matrix = null;
/// Non utilisé pour ce script mais à ne pas effacer public String [] necessaryResult = { // put here all necessary result for this rule // example: // ResultName.MATRIX_BIOMASS, // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, };
public String[] getNecessaryResult() { return this.necessaryResult; }
/** * Permet d'afficher a l'utilisateur une aide sur le plan. * @return L'aide ou la description du plan */ public String getDescription() throws Exception { return _("réalise les expériences d'un plan complet pour 9 parametres à 2 modalités"); } /** * Appel? au d?marrage de la simulation, cette m?thode permet d'initialiser * des valeurs * @param simulation La simulation pour lequel on utilise cette regle */ public void init(AnalysePlanContext context) throws Exception { /// Création de la matrice d'expérience et chargement : File dir = new File(param_directory); File csvFile = new File(dir, MATRIX + ".txt"); log.info("CSV file is : " + csvFile.getAbsolutePath()); if(!csvFile.exists()) { log.warn("File doesn't exists"); }
matrix = MatrixFactory.getInstance().create(new int[]{param_simulationNumber, param_parameterNumber}); matrix.importCSV(new FileReader(csvFile), new int[]{0,0}); matrix.setSemantics(1, Arrays.asList(new String[]{VBGF,FECONDITY,MIGRATION,MORTALITY,CATCHABILITY,FSTD,SELECTIVITY,TARGET,EFFORT})); System.out.println(matrix);
/// ajout des regles qui sont modifiées par le plan //context.getParam().addExtraRules("Cantonnement","Cantonnement","Cantonnement","Cantonnement","Cantonnement","Cantonnement"); ////////////* ecrire cantonnement 11 fois s'il y a 11 regles cantonnement }
/// Création des méthodes qui réccupère dans la matrice la modalité du paramètre pour l'expérience en cours /// Les arguments des méthodes sont le nom du fichier et le numéro de la simulation /// (On détermine l'expérience en cours et donc la ligne de la matrice en sommant le numéro de la simulation et le param_first) /// pour un double private double getDouble(String name, int simulation) throws Exception { File dir = new File(param_directory); Properties prop = new Properties(); prop.load(new BufferedReader(new FileReader(new File(dir, name + ".txt")))); int ligne = simulation + param_first; int mod = (int)matrix.getValue(ligne, name); System.out.println("mod et ligne : "+ mod+" "+ligne); double result = Double.parseDouble(prop.getProperty(""+mod)); System.out.println("result : "+ result); return result; } /// pour une liste de doubles
/** * @param name le nom de l'element a recuperer * @param simulation le numero de la simulation * @return */ private double [] getList(String name, int simulation) throws Exception { File dir = new File(param_directory); Properties prop = new Properties(); prop.load(new BufferedReader(new FileReader(new File(dir, name + ".txt")))); int ligne = simulation + param_first; int mod = (int)matrix.getValue(ligne, name); double [] result = StringUtil.toArrayDouble(prop.getProperty(""+mod).split(";")); // ""+ ca construit une chaine de caractere return result; } /// pour une chaine de characteres (equation) /** * @param name le nom de l'element a recuperer * @param simulation le numero de la simulation * @return */ private String getString(String name,String col, int simulation) throws Exception { File dir = new File(param_directory); Properties prop = new Properties(); prop.load(new BufferedReader(new FileReader(new File(dir, name + ".txt")))); int ligne = simulation + param_first; int mod = (int)matrix.getValue(ligne , col); String result = prop.getProperty(""+mod); return result; } /// pour les paramètres d'une règle de gestion /** * @param name le nom de l'element a recuperer * @param simulation le numero de la simulation * @return */ private Rule getRule(RegionStorage regionStorage, String name, String col, int simulation) throws Exception { File dir = new File(param_directory); Properties prop = new Properties(); prop.load(new BufferedReader(new FileReader(new File(dir, name+".txt")))); int ligne = simulation + param_first; int mod = (int)matrix.getValue(ligne , col); String ruleName = prop.getProperty(""+mod); RuleStorage ruleStorage = RuleStorage.getRule(ruleName); Rule rule = ruleStorage.getNewRuleInstance(); RuleHelper.populateRule(mod, regionStorage, rule, prop); return rule; } /** * Call before each simulation * @param context plan context * @param nextSimulation storage used for next simulation * @return true if we must do next simulation, false to stop plan * @throws Exception */ public boolean beforeSimulation(AnalysePlanContext context, SimulationStorage nextSimulation) throws Exception {
int simNum = context.getNumber()+ param_first; if(simNum < param_simulationNumber+1) { /// On vérifie qu'il reste des expériences à faire
/// On utilise les méthodes crées pour récupérer les valeurs des modalités pour l'expérience en cours double [] croissance = getList (VBGF , simNum); double reproductionRate = getDouble (FECONDITY, simNum); double migration = getDouble (MIGRATION,simNum); String mortality = getString (MORTALITY,MORTALITY, simNum); double catchability = getDouble (CATCHABILITY, simNum); double standardisation = getDouble (FSTD, simNum); //String selectivity = getString (SELECTIVITY, simNum); String selectivityFiletMer = getString (SELECTIVITYFiletMer,SELECTIVITY, simNum); String selectivityFiletEtang = getString (SELECTIVITYFiletEtang,SELECTIVITY, simNum); String selectivityLignecote = getString (SELECTIVITYLignecote,SELECTIVITY, simNum); String selectivityLigneemb = getString (SELECTIVITYLigneemb,SELECTIVITY, simNum); String selectivityChalut = getString (SELECTIVITYChalut,SELECTIVITY, simNum); String selectivityHarpon = getString (SELECTIVITYHarpon,SELECTIVITY, simNum); double targetFactor = getDouble (TARGET, simNum); double effort = getDouble (EFFORT, simNum); //Rule amp1 = getRule(context.getParam().getRegion(), AMP1, AMP, simNum); //Rule amp2 = getRule(context.getParam().getRegion(), AMP2, AMP, simNum); ///////////////* à completer avec le reste des amp*/ /// On peut afficher des informations dans les logs nextSimulation.getInformation().addInformation("Fecondites ("+context.getNumber()+")= " + reproductionRate); //nextSimulation.getInformation().addInformation("Selectivites ("+context.getNumber()+")= " + selectivityEquation);
/// Il faut maintenant modifier la valeur des paramètres dans la base de données et les paramètres des règle de la simulation /// modif les parametres des regles de gestion : // on enleve la regle de la simulation passé (elle est stoquée sous le nom LastAMP) //List<Rule> paramRules = nextSimulation.getParameter().getRules(); //paramRules.remove(context.getValue("lastAMP1")); // on nomme la regle que l'on va ajouter LastAMP (pour pouvoir la retrouver a la simulation suivante) //context.setValue("lastAMP1", amp1); // on ajoute la regle à la simulation // paramRules.add(amp1); //paramRules.remove(context.getValue("lastAMP2")); //context.setValue("lastAMP2", amp2); //paramRules.add(amp2); /////////////////* à completer avec les autres amp */ /// modif les parametres dans la base de données TopiaContext tx = nextSimulation.getStorage().beginTransaction(); /// On récupère les objets ISIS a modifier dans la base de données PopulationDAO popDAO = IsisFishDAOHelper.getPopulationDAO(tx); Population pop = popDAO.findByName("CSar"); List<PopulationGroup> groups = pop.getPopulationGroup(); GearDAO gearDAO = IsisFishDAOHelper.getGearDAO(tx); List<Gear> gears = gearDAO.findAll();
///modif fecondité et borne des classes de taille /// On remplace les bornes par les éléments de la liste
for (PopulationGroup group : groups) { group.setReproductionRate(group.getReproductionRate() * reproductionRate); group.setMinLength(croissance[group.getId()]) ; group.setMaxLength(croissance[group.getId()+1]) ; } // modif du coeff de migration de reproduction
List<PopulationSeasonInfo> saison = pop.getPopulationSeasonInfo(); for(PopulationSeasonInfo sea : saison){ MatrixND mig = sea.getMigrationMatrix(); for (MatrixIterator i = mig.iterator(); i.hasNext();){ i.next(); Object [] sem = i.getSemanticsCoordinates(); PopulationGroup group = (PopulationGroup)sem[0]; Zone Zdep = (Zone)sem[1]; Zone Zarr = (Zone)sem[2]; double multi = 0; if (migration == 0.8) {multi = 1 ; }else if(migration == 1.2){multi = -1 ; }
if (sea.getFirstMonth().equals(Month.APRIL)){ if (group.getId() > 3){ if (Zdep.getName().equals("Spresence")){ if (Zarr.getName().equals("RreproMreserve")){ i.setValue(i.getValue()*migration);
}else if (Zarr.getName().equals("Srepro")){ double v = i.getValue()+ multi*0.0051614 ; if (v > 0){ i.setValue(v); }else { i.setValue(0); } } } if (Zdep.getName().equals("RpresenceMreserve")){ if (Zarr.getName().equals("Srepro")){ i.setValue(i.getValue()*migration); }else if (Zarr.getName().equals("RreproMreserve")){ double v = i.getValue()+ multi*0.02105263 ; if (v > 0){ i.setValue(v); }else { i.setValue(0); } } else if (Zarr.getName().equals("RPrepro")) { double v = i.getValue()+ multi*0.02105263; if (v > 0){ i.setValue(v); }else { i.setValue(0); } } } if (Zdep.getName().equals("RI")){ if (Zarr.getName().equals("RPrepro")){ i.setValue(i.getValue()*migration); }else if (Zarr.getName().equals("RreproMreserve")){ double v = i.getValue()+ multi*0.1 ; if (v > 0){ i.setValue(v); }else { i.setValue(0); } } } if (Zdep.getName().equals("RPjeunes")){ if (Zarr.getName().equals("RPrepro")){ i.setValue(i.getValue()*migration); }else if (Zarr.getName().equals("RreproMreserve")){ double v = i.getValue()+ multi*0.06 ; if (v > 0){ i.setValue(v); }else { i.setValue(0); } } } } // modif du coeff de migration de retour vers les zones de presence en mai if (sea.getFirstMonth().equals(Month.MAY)){ if (group.getId() > 3){ if (Zdep.getName().equals("Srepro")){ if (Zarr.getName().equals("Spresence")){ i.setValue(i.getValue()*migration); }else if (Zarr.getName().equals("RpresenceMreserve")){ double v = i.getValue()+ multi*0.14 ; if (v > 0){ i.setValue(v); }else { i.setValue(0); } } } if (Zdep.getName().equals("RreproMreserve")){ if (Zarr.getName().equals("RpresenceMreserve")){ i.setValue(i.getValue()*migration); }else if (Zarr.getName().equals("Spresence")){ double v = i.getValue()+ multi*0.15384614 ; if (v > 0){ i.setValue(v); }else { i.setValue(0); } } } if (Zdep.getName().equals("RPrepro")){ if (Zarr.getName().equals("RpresenceMreserve")){ i.setValue(i.getValue()*migration); }else if (Zarr.getName().equals("RI")) { double v = i.getValue()+ multi*0.02222 ; if (v > 0){ i.setValue(v); }else { i.setValue(0); } }else if (Zarr.getName().equals("RP")) { double v = i.getValue()+ multi*0.02222 ; if (v > 0){ i.setValue(v); }else { i.setValue(0); } } } } }
// modif du coeff de migration de Novembre-Fevrier if (sea.getFirstMonth().equals(Month.NOVEMBER)){ if (group.getId() > 2){ if (Zdep.getName().equals("Spresence")){ if (Zarr.getName().equals("RpresenceMreserve")){ i.setValue(i.getValue()*migration ); } } } } // modif du coeff de migration SLagune if (sea.getFirstMonth().equals(Month.SEPTEMBER)){ if (group.getId() == 1){ if (Zdep.getName().equals("SLagune")){ if (Zarr.getName().equals("Sjeunes")){ i.setValue(i.getValue()*migration + multi*0.14); } } } } } } }
// modif la mortalité naturelle /// On modifie la valeur de la base en la remplacant par la valeur contenue dans la modalité for (PopulationGroup group : groups) { Equation eq = pop.getNaturalDeathRate(); eq.setContent(mortality); } // modif la capturabilité /// On modifie la valeur de la base en la multipliant par la valeur contenue dans la modalité MatrixND c = pop.getCapturability(); for (MatrixIterator i = c.iterator(); i.hasNext();){ i.next(); i.setValue(i.getValue()* catchability); } /// modif selectivité et facteur de standardisation for (Gear gear : gears) {
if ("FiletMer".equals(gear.getName())) { Selectivity sel = gear.getPopulationSelectivity(pop); Equation eq = sel.getEquation(); eq.setContent(selectivityFiletMer); gear.setStandardisationFactor(gear.getStandardisationFactor()*standardisation); } else if ("FiletEtang".equals(gear.getName())) { Selectivity sel = gear.getPopulationSelectivity(pop); Equation eq = sel.getEquation(); eq.setContent(selectivityFiletEtang); gear.setStandardisationFactor(gear.getStandardisationFactor()*standardisation); }else if ("Lignecote".equals(gear.getName())) { Selectivity sel = gear.getPopulationSelectivity(pop); Equation eq = sel.getEquation(); eq.setContent(selectivityLignecote); gear.setStandardisationFactor(gear.getStandardisationFactor()*standardisation); }else if ("Ligneemb".equals(gear.getName())) { Selectivity sel = gear.getPopulationSelectivity(pop); Equation eq = sel.getEquation(); eq.setContent(selectivityLigneemb); gear.setStandardisationFactor(gear.getStandardisationFactor()*standardisation); }else if ("Chalut".equals(gear.getName())) { Selectivity sel = gear.getPopulationSelectivity(pop); Equation eq = sel.getEquation(); eq.setContent(selectivityChalut); gear.setStandardisationFactor(gear.getStandardisationFactor()*standardisation); }else if ("Harpon".equals(gear.getName())) { Selectivity sel = gear.getPopulationSelectivity(pop); Equation eq = sel.getEquation(); eq.setContent(selectivityHarpon); gear.setStandardisationFactor(gear.getStandardisationFactor()*standardisation); } } // modif le coeff de ciblage MetierDAO metierDAO = IsisFishDAOHelper.getMetierDAO(tx); List<Metier> metiers = metierDAO.findAll(); for(Metier metier : metiers){ if ( !"Chalut".equals(metier.getName())){ //log.info("metier = " + metier.getName()); List<MetierSeasonInfo> seasons = metier.getMetierSeasonInfo(); for(MetierSeasonInfo season : seasons){ Equation target = season.getSpeciesTargetSpecies(pop.getSpecies()).getTargetFactorEquation(); //log.info("ancien target : " + target.getContent()); String [] eqt = target.getContent().split("return ");
//log.info("eqt0 : " + eqt[0]); //log.info("eqt1 : " + eqt[1]); String [] coeff = new String [] {"double mult=" + targetFactor + "; return "}; String coef = (String) coeff[0]; //log.info("coef" + coef); String [] coeff2 = new String [] {coef + eqt[1] } ; String coef2 = (String) coeff2[0] ; //log.info("coef2" + coef2); target.setContent(coef2); } }else if ( !"HameconembReserve".equals(metier.getName())){ //log.info("metier = " + metier.getName()); List<MetierSeasonInfo> seasons = metier.getMetierSeasonInfo(); for(MetierSeasonInfo season : seasons){ Equation target = season.getSpeciesTargetSpecies(pop.getSpecies()).getTargetFactorEquation(); //log.info("ancien target : " + target.getContent()); String [] eqt = target.getContent().split("return ");
//log.info("eqt0 : " + eqt[0]); //log.info("eqt1 : " + eqt[1]); String [] coeff = new String [] {"double mult=" + targetFactor + "; return "}; String coef = (String) coeff[0]; //log.info("coef" + coef); String [] coeff2 = new String [] {coef + eqt[1] } ; String coef2 = (String) coeff2[0] ; //log.info("coef2" + coef2); target.setContent(coef2); } }else if ( !"FiletMer".equals(metier.getName())){ //log.info("metier = " + metier.getName()); List<MetierSeasonInfo> seasons = metier.getMetierSeasonInfo(); for(MetierSeasonInfo season : seasons){ Equation target = season.getSpeciesTargetSpecies(pop.getSpecies()).getTargetFactorEquation(); //log.info("ancien target : " + target.getContent()); String [] eqt = target.getContent().split("return ");
//log.info("eqt0 : " + eqt[0]); //log.info("eqt1 : " + eqt[1]); String [] coeff = new String [] {"double mult=" + targetFactor + "; return "}; String coef = (String) coeff[0]; //log.info("coef" + coef); String [] coeff2 = new String [] {coef + eqt[1] } ; String coef2 = (String) coeff2[0] ; //log.info("coef2" + coef2); target.setContent(coef2); } }else if ( !"Etang".equals(metier.getName())){ //log.info("metier = " + metier.getName()); List<MetierSeasonInfo> seasons = metier.getMetierSeasonInfo(); for(MetierSeasonInfo season : seasons){ Equation target = season.getSpeciesTargetSpecies(pop.getSpecies()).getTargetFactorEquation(); //log.info("ancien target : " + target.getContent()); String [] eqt = target.getContent().split("return ");
//log.info("eqt0 : " + eqt[0]); //log.info("eqt1 : " + eqt[1]); String [] coeff = new String [] {"double mult=" + targetFactor + "; return "}; String coef = (String) coeff[0]; //log.info("coef" + coef); String [] coeff2 = new String [] {coef + eqt[1] } ; String coef2 = (String) coeff2[0] ; //log.info("coef2" + coef2); target.setContent(coef2); } }else if ( !"HameconcoteReserve".equals(metier.getName())){ //log.info("metier = " + metier.getName()); List<MetierSeasonInfo> seasons = metier.getMetierSeasonInfo(); for(MetierSeasonInfo season : seasons){ Equation target = season.getSpeciesTargetSpecies(pop.getSpecies()).getTargetFactorEquation(); //log.info("ancien target : " + target.getContent()); String [] eqt = target.getContent().split("return ");
//log.info("eqt0 : " + eqt[0]); //log.info("eqt1 : " + eqt[1]); String [] coeff = new String [] {"double mult=" + targetFactor + "; return "}; String coef = (String) coeff[0]; //log.info("coef" + coef); String [] coeff2 = new String [] {coef + eqt[1] } ; String coef2 = (String) coeff2[0] ; //log.info("coef2" + coef2); target.setContent(coef2); } }else if ( !"Harpon".equals(metier.getName())){ //log.info("metier = " + metier.getName()); List<MetierSeasonInfo> seasons = metier.getMetierSeasonInfo(); for(MetierSeasonInfo season : seasons){ Equation target = season.getSpeciesTargetSpecies(pop.getSpecies()).getTargetFactorEquation(); //log.info("ancien target : " + target.getContent()); String [] eqt = target.getContent().split("return ");
//log.info("eqt0 : " + eqt[0]); //log.info("eqt1 : " + eqt[1]); String [] coeff = new String [] {"double mult=" + targetFactor + "; return "}; String coef = (String) coeff[0]; //log.info("coef" + coef); String [] coeff2 = new String [] {coef + eqt[1] } ; String coef2 = (String) coeff2[0] ; //log.info("coef2" + coef2); target.setContent(coef2); } }else if ( !"Hameconemb".equals(metier.getName())){ //log.info("metier = " + metier.getName()); List<MetierSeasonInfo> seasons = metier.getMetierSeasonInfo(); for(MetierSeasonInfo season : seasons){ Equation target = season.getSpeciesTargetSpecies(pop.getSpecies()).getTargetFactorEquation(); //log.info("ancien target : " + target.getContent()); String [] eqt = target.getContent().split("return ");
//log.info("eqt0 : " + eqt[0]); //log.info("eqt1 : " + eqt[1]); String [] coeff = new String [] {"double mult=" + targetFactor + "; return "}; String coef = (String) coeff[0]; //log.info("coef" + coef); String [] coeff2 = new String [] {coef + eqt[1] } ; String coef2 = (String) coeff2[0] ; //log.info("coef2" + coef2); target.setContent(coef2); } }else if ( !"FiletReserve".equals(metier.getName())){ //log.info("metier = " + metier.getName()); List<MetierSeasonInfo> seasons = metier.getMetierSeasonInfo(); for(MetierSeasonInfo season : seasons){ Equation target = season.getSpeciesTargetSpecies(pop.getSpecies()).getTargetFactorEquation(); //log.info("ancien target : " + target.getContent()); String [] eqt = target.getContent().split("return ");
//log.info("eqt0 : " + eqt[0]); //log.info("eqt1 : " + eqt[1]); String [] coeff = new String [] {"double mult=" + targetFactor + "; return "}; String coef = (String) coeff[0]; //log.info("coef" + coef); String [] coeff2 = new String [] {coef + eqt[1] } ; String coef2 = (String) coeff2[0] ; //log.info("coef2" + coef2); target.setContent(coef2); } }else if ( !"Hameconcote".equals(metier.getName())){ //log.info("metier = " + metier.getName()); List<MetierSeasonInfo> seasons = metier.getMetierSeasonInfo(); for(MetierSeasonInfo season : seasons){ Equation target = season.getSpeciesTargetSpecies(pop.getSpecies()).getTargetFactorEquation(); //log.info("ancien target : " + target.getContent()); String [] eqt = target.getContent().split("return ");
//log.info("eqt0 : " + eqt[0]); //log.info("eqt1 : " + eqt[1]); String [] coeff = new String [] {"double mult=" + targetFactor + "; return "}; String coef = (String) coeff[0]; //log.info("coef" + coef); String [] coeff2 = new String [] {coef + eqt[1] } ; String coef2 = (String) coeff2[0] ; //log.info("coef2" + coef2); target.setContent(coef2); } } } // modif le nb de jours d inactivité //log.info("INACTIVITY");
StrategyDAO strategyDAO = IsisFishDAOHelper.getStrategyDAO(tx) ; List<Strategy> strategies = strategyDAO.findAll(); for (Strategy strategy : strategies) { List <StrategyMonthInfo> monthInfos = strategy.getStrategyMonthInfo(); for (StrategyMonthInfo month : monthInfos) { double days = month.getMinInactivityDays()*effort; int Days = (int) days ; //log.info("nb j inact = " + Days) ; month.setMinInactivityDays(Days); } } tx.commitTransaction(); return true;
}else { return false; } }
/** * Call before each simulation * @param context plan context * @param nextSimulation storage used for next simulation * @return true if we must do next simulation, false to stop plan * @throws Exception */ public boolean afterSimulation(AnalysePlanContext context, SimulationStorage lastSimulation) throws Exception { return true; }
} ------------------------------------------------------------------------
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-- ...................................................................... Stephanie MAHEVAS (Stephanie.Mahevas@ifremer.fr) IFREMER/EMH (Ecologie et Modèles pour l'Halieutique) Tel: 02 40 37 41 81 Fax: 02 40 37 40 75 o \ o / _ o __| \ / |__ o _ \ o / o /|\ | /\ ___\o \o | o/ o/__ /\ | /|\ / \ / \ | \ /) | ( \ /o\ / ) | (\ / | / \ / \ ...................................................................... _______________________________________________ Isis-fish-user mailing list Isis-fish-user@lists.labs.libre-entreprise.org http://lists.labs.libre-entreprise.org/mailman/listinfo/isis-fish-user