May 2014 - Tutti-commits - mailman.cloud.codelutin.com

r1755 - trunk/tutti-service
by tchemit＠users.forge.codelutin.com 06 May '14

06 May '14

Author: tchemit Date: 2014-05-06 09:20:19 +0200 (Tue, 06 May 2014) New Revision: 1755 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1755 Log: optimize dependencies Modified: trunk/tutti-service/pom.xml Modified: trunk/tutti-service/pom.xml =================================================================== --- trunk/tutti-service/pom.xml 2014-05-06 07:19:53 UTC (rev 1754) +++ trunk/tutti-service/pom.xml 2014-05-06 07:20:19 UTC (rev 1755) @@ -70,6 +70,10 @@ <artifactId>nuiton-decorator</artifactId> </dependency> <dependency> + <groupId>org.nuiton</groupId> + <artifactId>nuiton-config</artifactId> + </dependency> + <dependency> <groupId>org.nuiton.i18n</groupId> <artifactId>nuiton-i18n</artifactId> </dependency>

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r1754 - branches
by tchemit＠users.forge.codelutin.com 06 May '14

06 May '14

Author: tchemit Date: 2014-05-06 09:19:53 +0200 (Tue, 06 May 2014) New Revision: 1754 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1754 Log: remove obsolete branches Removed: branches/3.3.6/ branches/3.4.1/ branches/tutti-3.3.x/ branches/tutti-3.4/ branches/tutti-before-ifremer-shared/

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r1753 - in trunk: tutti-persistence/src/main/java/fr/ifremer/tutti/persistence tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri tutti-service/src/test/resources/pupitri
by tchemit＠users.forge.codelutin.com 05 May '14

05 May '14

Author: tchemit Date: 2014-05-05 17:00:37 +0200 (Mon, 05 May 2014) New Revision: 1753 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1753 Log: merge from refs #5032 (version 3.4.1) Added: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java trunk/tutti-service/src/test/resources/pupitri/ano-5032.car trunk/tutti-service/src/test/resources/pupitri/ano-5032.tnk trunk/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol Removed: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java trunk/tutti-service/src/test/resources/pupitri/ano-3898.car Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2014-05-05 14:59:13 UTC (rev 1752) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -4,6 +4,7 @@ * #%L * Tutti :: Persistence API * $Id$ + * $Id$ * $HeadURL$ * %% * Copyright (C) 2012 Ifremer @@ -622,28 +623,32 @@ Map<String, Species> map = TuttiEntities.splitByTaxonId(allReferentSpecies); - Iterator<SpeciesProtocol> iterator = protocol.getSpecies().iterator(); - while (iterator.hasNext()) { - SpeciesProtocol speciesProtocol = iterator.next(); - String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId()); - Species species = map.get(taxonId); - if (species == null) { - if (log.isWarnEnabled()) { - log.warn("Could not find protocol species " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential."); + if (!protocol.isSpeciesEmpty()) { + Iterator<SpeciesProtocol> iterator = protocol.getSpecies().iterator(); + while (iterator.hasNext()) { + SpeciesProtocol speciesProtocol = iterator.next(); + String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId()); + Species species = map.get(taxonId); + if (species == null) { + if (log.isWarnEnabled()) { + log.warn("Could not find protocol species " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential."); + } + iterator.remove(); } - iterator.remove(); } } - iterator = protocol.getBenthos().iterator(); - while (iterator.hasNext()) { - SpeciesProtocol speciesProtocol = iterator.next(); - String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId()); - Species species = map.get(taxonId); - if (species == null) { - if (log.isWarnEnabled()) { - log.warn("Could not find protocol benthos " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential."); + if (!protocol.isBenthosEmpty()) { + Iterator<SpeciesProtocol> iterator = protocol.getBenthos().iterator(); + while (iterator.hasNext()) { + SpeciesProtocol speciesProtocol = iterator.next(); + String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId()); + Species species = map.get(taxonId); + if (species == null) { + if (log.isWarnEnabled()) { + log.warn("Could not find protocol benthos " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential."); + } + iterator.remove(); } - iterator.remove(); } } return protocol; @@ -917,20 +922,24 @@ Map<Integer, String> surveyCodeByTaxonId = Maps.newTreeMap(); - for (SpeciesProtocol speciesProtocol : protocol.getSpecies()) { - String surveyCode = speciesProtocol.getSpeciesSurveyCode(); - if (StringUtils.isNotBlank(surveyCode)) { - Integer taxonId = - speciesProtocol.getSpeciesReferenceTaxonId(); - surveyCodeByTaxonId.put(taxonId, surveyCode); + if (!protocol.isSpeciesEmpty()) { + for (SpeciesProtocol speciesProtocol : protocol.getSpecies()) { + String surveyCode = speciesProtocol.getSpeciesSurveyCode(); + if (StringUtils.isNotBlank(surveyCode)) { + Integer taxonId = + speciesProtocol.getSpeciesReferenceTaxonId(); + surveyCodeByTaxonId.put(taxonId, surveyCode); + } } } - for (SpeciesProtocol speciesProtocol : protocol.getBenthos()) { - String surveyCode = speciesProtocol.getSpeciesSurveyCode(); - if (StringUtils.isNotBlank(surveyCode)) { - Integer taxonId = - speciesProtocol.getSpeciesReferenceTaxonId(); - surveyCodeByTaxonId.put(taxonId, surveyCode); + if (!protocol.isBenthosEmpty()) { + for (SpeciesProtocol speciesProtocol : protocol.getBenthos()) { + String surveyCode = speciesProtocol.getSpeciesSurveyCode(); + if (StringUtils.isNotBlank(surveyCode)) { + Integer taxonId = + speciesProtocol.getSpeciesReferenceTaxonId(); + surveyCodeByTaxonId.put(taxonId, surveyCode); + } } } for (Species species : speciesList) { Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java 2014-05-05 14:59:13 UTC (rev 1752) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -4,6 +4,7 @@ * #%L * Tutti :: Persistence API * $Id$ + * $Id$ * $HeadURL$ * %% * Copyright (C) 2012 Ifremer @@ -147,6 +148,10 @@ return Multimaps.index(list, GET_REF_TAX_CODE); } + public static Multimap<String, Species> splitBySurveyCode(Iterable<Species> list) { + return Multimaps.index(list, GET_SURVEY_CODE); + } + public static final Function<Species, String> GET_TAXON_ID = new Function<Species, String>() { @Override public String apply(Species input) { @@ -161,6 +166,13 @@ } }; + public static final Function<Species, String> GET_SURVEY_CODE = new Function<Species, String>() { + @Override + public String apply(Species input) { + return String.valueOf(input.getSurveyCode()); + } + }; + public static final Function<TuttiEntity, String> GET_ID = new Function<TuttiEntity, String>() { @Override public String apply(TuttiEntity input) { @@ -515,7 +527,7 @@ public static float roundKiloGram(float value) { BigDecimal sumB = new BigDecimal(value); float result; - if (Math.abs(value - sumB.floatValue())< 0.0001f) { + if (Math.abs(value - sumB.floatValue()) < 0.0001f) { result = value; } else { result = sumB.abs(MATH_CONTEXT_4_DIGIT).floatValue(); Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java 2014-05-05 14:59:13 UTC (rev 1752) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -25,11 +25,7 @@ */ import fr.ifremer.tutti.service.TuttiCsvUtil; -import org.apache.commons.lang3.StringUtils; -import org.nuiton.csv.ValueParser; -import java.text.ParseException; - /** * @author kmorin <kmorin(a)codelutin.com> * @since 1.2 @@ -41,13 +37,7 @@ newMandatoryColumn(CarrouselRow.PROPERTY_OPERATION_CODE); newMandatoryColumn(CarrouselRow.PROPERTY_RIG_NUMBER); - newMandatoryColumn(CarrouselRow.PROPERTY_SPECIES_ID, new ValueParser<String>() { - - @Override - public String parse(String string) throws ParseException { - return StringUtils.remove(string, '-').trim(); - } - }); + newMandatoryColumn(CarrouselRow.PROPERTY_SPECIES_ID); newMandatoryColumn(CarrouselRow.PROPERTY_SIGN); newMandatoryColumn(CarrouselRow.PROPERTY_DIRECTION, TuttiCsvUtil.newEnumByNameParserFormatter(Directions.class)); Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java 2014-05-05 14:59:13 UTC (rev 1752) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -30,7 +30,6 @@ import com.google.common.collect.ListMultimap; import com.google.common.collect.Lists; import com.google.common.collect.Maps; -import com.google.common.collect.Multimaps; import com.google.common.collect.Sets; import fr.ifremer.adagio.core.dao.referential.pmfm.ObjectTypeCode2; import fr.ifremer.adagio.core.dao.referential.pmfm.PmfmId2; @@ -147,7 +146,7 @@ PupitriImportResult result = new PupitriImportResult(trunkFile, carrouselFile); - importPupitriTrunk(result, trunkFile, operation, catchBatch); + importPupitriTrunk(result, trunkFile, operation); importPupitriCarrousel(result, carrouselFile, operation, catchBatch); if (result.isFishingOperationFound()) { @@ -201,9 +200,7 @@ persistenceService.createAttachment(attachment, f); } - protected void importPupitriTrunk(PupitriImportResult result, File file, - FishingOperation operation, - CatchBatch catchBatch) { + protected void importPupitriTrunk(PupitriImportResult result, File file, FishingOperation operation) { if (log.isInfoEnabled()) { log.info("Will import pupitri operation [" + operation.toString() + @@ -272,22 +269,9 @@ // prepare import - //FIXME tchemit-2013-12-02 Explain what does it do ? - // get the map of species by survey code + // get the map of species by survey code or reftax code ListMultimap<String, Species> speciesBySurveyCode = ArrayListMultimap.create(); - - speciesBySurveyCode.putAll( - Multimaps.index(dataContext.getReferentSpeciesWithSurveyCode(), - new Function<Species, String>() { - @Override - public String apply(Species input) { - String surveyCode = String.valueOf(input.getSurveyCode()); - int end = Math.min(surveyCode.length(), 7); - return surveyCode.substring(0, end); - } - } - ) - ); + speciesBySurveyCode.putAll(TuttiEntities.splitBySurveyCode(dataContext.getReferentSpeciesWithSurveyCode())); speciesBySurveyCode.putAll(TuttiEntities.splitByRefTaxCode(dataContext.getReferentSpecies())); // import the batches Copied: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java (from rev 1735, trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java) =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java (rev 0) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -0,0 +1,137 @@ +package fr.ifremer.tutti.service.pupitri; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.TuttiConfigurationOption; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.DecoratorService; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.ServiceDbResource; +import fr.ifremer.tutti.service.TuttiServiceContext; +import org.junit.Assert; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; +import org.nuiton.decorator.Decorator; + +import java.io.File; +import java.io.IOException; + +/** + * @author tchemit <chemit(a)codelutin.com> + * @since 3.0-rc-2 + */ +public class PupitriImportServiceAno3898Test { + + @ClassRule + public static final ServiceDbResource dbResource = + ServiceDbResource.writeDb("dbExport"); + + public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; + + public static final String CRUISE_ID = "100003"; + + public static final String OPERATION_1_ID = "100112"; + + public static final String OPERATION_2_ID = "100113"; + + public static final String OPERATION_3_ID = "100115"; + + protected PupitriImportExportService service; + + protected PersistenceService persistenceService; + + protected DecoratorService decoratorService; + + protected ServiceDbResource.DataContext dataContext; + + @Before + public void setUp() throws Exception { + + TuttiServiceContext serviceContext = dbResource.getServiceContext(); + + persistenceService = serviceContext.getService(PersistenceService.class); + + decoratorService = serviceContext.getService(DecoratorService.class); + + dbResource.openDataContext(); + + service = serviceContext.getService(PupitriImportExportService.class); + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 3, + OPERATION_2_ID, + OPERATION_1_ID, + OPERATION_3_ID); + } + + @Test + public void importPupitri() throws IOException { + + File trunk = dbResource.copyClassPathResource("pupitri/ano-3898.tnk", "pupitri.tnk"); + File carroussel = dbResource.copyClassPathResource("pupitri/ano-3898.car", "pupitri.car"); + File protocol = dbResource.copyClassPathResource("pupitri/ano-3898.tuttiProtocol", "ano-3898.tuttiProtocol"); + dbResource.getConfig().getApplicationConfig().setOption(TuttiConfigurationOption.DB_PROTOCOL_DIRECTORY.getKey(), protocol.getParentFile().getAbsolutePath()); + TuttiProtocol protocol1 = persistenceService.getProtocol("ano-3898"); + persistenceService.setProtocol(protocol1); + + FishingOperation operation = dataContext.operations.get(1); + CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation(operation.getId()); + catchBatch.setFishingOperation(operation); + + BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(operation.getId(), false); + Assert.assertEquals(3, rootSpeciesBatch.sizeChildren()); + int nbNotAdded = service.importPupitri(trunk, carroussel, operation, catchBatch).getNbCarrousselNotImported(); + Assert.assertEquals(0, nbNotAdded); + BatchContainer<SpeciesBatch> rootSpeciesBatchAfter = persistenceService.getRootSpeciesBatch(operation.getId(), false); + Assert.assertEquals(31, rootSpeciesBatchAfter.sizeChildren()); + + Decorator<Species> speciesDecorator = decoratorService.getDecoratorByType(Species.class); + + for (SpeciesBatch speciesBatch : rootSpeciesBatchAfter.getChildren()) { + + Integer nbChildren = null; + // species 17003 (MELAAEG) has two childs (SMALL - BIG) + if (17003 == speciesBatch.getSpecies().getIdAsInt()) { + nbChildren = 2; + // species 37312 (LOLIFOR) has no childs (in puttitri has some DEFAULT AND SMALL) + } else if (37312 == speciesBatch.getSpecies().getIdAsInt()) { + nbChildren = 0; + // species 17005 (MERNMER) has no childs (in puttitri has some DEFAULT AND SMALL) + } else if (17005 == speciesBatch.getSpecies().getIdAsInt()) { + nbChildren = 0; + } + + if (nbChildren != null) { + Assert.assertEquals("SpeciesBatch with species " + speciesDecorator.toString(speciesBatch.getSpecies()) + " should have with " + nbChildren + " but had " + speciesBatch.sizeChildBatchs(), nbChildren.intValue(), speciesBatch.sizeChildBatchs()); + } + + } + } +} Added: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java (rev 0) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -0,0 +1,152 @@ +package fr.ifremer.tutti.service.pupitri; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL: https://svn.codelutin.com/tutti/branches/3.3.6/tutti-service/src/test/java/… $ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.collect.Sets; +import fr.ifremer.tutti.TuttiConfigurationOption; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.DecoratorService; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.ServiceDbResource; +import fr.ifremer.tutti.service.TuttiServiceContext; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.junit.Assert; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; +import org.nuiton.decorator.Decorator; + +import java.io.File; +import java.io.IOException; +import java.util.Set; + +/** + * @author tchemit <chemit(a)codelutin.com> + * @since 3.0-rc-2 + */ +public class PupitriImportServiceAno5032Test { + + /** Logger. */ + private static final Log log = LogFactory.getLog(PupitriImportServiceAno5032Test.class); + + @ClassRule + public static final ServiceDbResource dbResource = + ServiceDbResource.writeDb("dbExport"); + + public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; + + public static final String CRUISE_ID = "100003"; + + public static final String OPERATION_1_ID = "100112"; + + public static final String OPERATION_2_ID = "100113"; + + public static final String OPERATION_3_ID = "100115"; + + protected PupitriImportExportService service; + + protected PersistenceService persistenceService; + + protected DecoratorService decoratorService; + + protected ServiceDbResource.DataContext dataContext; + + @Before + public void setUp() throws Exception { + + TuttiServiceContext serviceContext = dbResource.getServiceContext(); + + persistenceService = serviceContext.getService(PersistenceService.class); + + decoratorService = serviceContext.getService(DecoratorService.class); + + dbResource.openDataContext(); + + service = serviceContext.getService(PupitriImportExportService.class); + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 3, + OPERATION_2_ID, + OPERATION_1_ID, + OPERATION_3_ID); + } + + @Test + public void importPupitri() throws IOException { + + File trunk = dbResource.copyClassPathResource("pupitri/ano-5032.tnk", "pupitri.tnk"); + File carroussel = dbResource.copyClassPathResource("pupitri/ano-5032.car", "pupitri.car"); + File protocol = dbResource.copyClassPathResource("pupitri/ano-5032.tuttiProtocol", "ano-5032.tuttiProtocol"); + dbResource.getConfig().getApplicationConfig().setOption(TuttiConfigurationOption.DB_PROTOCOL_DIRECTORY.getKey(), protocol.getParentFile().getAbsolutePath()); + TuttiProtocol protocol1 = persistenceService.getProtocol("ano-5032"); + persistenceService.setProtocol(protocol1); + + FishingOperation operation = dataContext.operations.get(1); + CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation(operation.getId()); + catchBatch.setFishingOperation(operation); + + BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(operation.getId(), false); + Assert.assertEquals(3, rootSpeciesBatch.sizeChildren()); + int nbNotAdded = service.importPupitri(trunk, carroussel, operation, catchBatch).getNbCarrousselNotImported(); + Assert.assertEquals(4, nbNotAdded); + BatchContainer<SpeciesBatch> rootSpeciesBatchAfter = persistenceService.getRootSpeciesBatch(operation.getId(), false); + Assert.assertEquals(4, rootSpeciesBatchAfter.sizeChildren()); + + Set<Integer> unexpectedSpecies = Sets.newHashSet( + ); + Set<Integer> expectedSpecies = Sets.newHashSet( + 17005, // MERNMER + 17186, // ACATPAL + 16328, // ACAPPEL + 20788 // ASRNATL + ); + + Decorator<Species> speciesDecorator = decoratorService.getDecoratorByType(Species.class); + + for (SpeciesBatch speciesBatch : rootSpeciesBatchAfter.getChildren()) { + + Species species = speciesBatch.getSpecies(); + Integer speciesId = species.getIdAsInt(); + boolean remove = expectedSpecies.remove(speciesId); + if (log.isInfoEnabled()) { + log.info("Species : " + speciesId + " : " + speciesDecorator.toString(species)); + } + if (!remove) { + unexpectedSpecies.add(speciesId); + if (log.isWarnEnabled()) { + log.warn("Unexpected Species " + speciesId); + } + } + } + + Assert.assertTrue("Expected species not found: " + expectedSpecies, expectedSpecies.isEmpty()); + Assert.assertTrue("Unexpected species found: " + unexpectedSpecies, unexpectedSpecies.isEmpty()); + } +} Property changes on: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision Added: svn:eol-style + native Deleted: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java 2014-05-05 14:59:13 UTC (rev 1752) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java 2014-05-05 15:00:37 UTC (rev 1753) @@ -1,138 +0,0 @@ -package fr.ifremer.tutti.service.pupitri; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.TuttiConfigurationOption; -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.service.DecoratorService; -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.ServiceDbResource; -import fr.ifremer.tutti.service.TuttiServiceContext; -import org.junit.Assert; -import org.junit.Before; -import org.junit.ClassRule; -import org.junit.Test; -import org.nuiton.decorator.Decorator; - -import java.io.File; -import java.io.IOException; - -/** - * @author tchemit <chemit(a)codelutin.com> - * @since 3.0-rc-2 - */ -public class PupitriImportServiceTest { - - @ClassRule - public static final ServiceDbResource dbResource = - ServiceDbResource.writeDb("dbExport"); - - public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; - - public static final String CRUISE_ID = "100003"; - - public static final String OPERATION_1_ID = "100112"; - - public static final String OPERATION_2_ID = "100113"; - - public static final String OPERATION_3_ID = "100115"; - - protected PupitriImportExportService service; - - protected PersistenceService persistenceService; - - protected DecoratorService decoratorService; - - protected ServiceDbResource.DataContext dataContext; - - @Before - public void setUp() throws Exception { - - TuttiServiceContext serviceContext = dbResource.getServiceContext(); - - persistenceService = serviceContext.getService(PersistenceService.class); - - decoratorService = serviceContext.getService(DecoratorService.class); - - dbResource.openDataContext(); - - service = serviceContext.getService(PupitriImportExportService.class); - - dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 3, - OPERATION_2_ID, - OPERATION_1_ID, - OPERATION_3_ID); - } - - @Test - public void importPupitriANO3898() throws IOException { - - File trunk = dbResource.copyClassPathResource("pupitri/ano-3898.tnk", "pupitri.tnk"); - File carroussel = dbResource.copyClassPathResource("pupitri/ano-3898.car", "pupitri.car"); - File protocol = dbResource.copyClassPathResource("pupitri/ano-3898.tuttiProtocol", "ano-3898.tuttiProtocol"); - dbResource.getConfig().getApplicationConfig().setOption(TuttiConfigurationOption.DB_PROTOCOL_DIRECTORY.getKey(), protocol.getParentFile().getAbsolutePath()); - TuttiProtocol protocol1 = persistenceService.getProtocol("ano-3898"); - persistenceService.setProtocol(protocol1); - - FishingOperation operation = dataContext.operations.get(1); - CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation(operation.getId()); - catchBatch.setFishingOperation(operation); - - BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(operation.getId(), false); - Assert.assertEquals(3, rootSpeciesBatch.sizeChildren()); - int nbNotAdded = service.importPupitri(trunk, carroussel, operation, catchBatch).getNbCarrousselNotImported(); - Assert.assertEquals(0, nbNotAdded); - BatchContainer<SpeciesBatch> rootSpeciesBatchAfter = persistenceService.getRootSpeciesBatch(operation.getId(), false); - Assert.assertEquals(31, rootSpeciesBatchAfter.sizeChildren()); - - Decorator<Species> speciesDecorator = decoratorService.getDecoratorByType(Species.class); - -// int index = 0; - for (SpeciesBatch speciesBatch : rootSpeciesBatchAfter.getChildren()) { - - Integer nbChildren = null; - // species 17003 (MELAAEG) has two childs (SMALL - BIG) - if (17003 == speciesBatch.getSpecies().getIdAsInt()) { - nbChildren = 2; - // species 37312 (LOLIFOR) has no childs (in puttitri has some DEFAULT AND SMALL) - } else if (37312 == speciesBatch.getSpecies().getIdAsInt()) { - nbChildren = 0; - // species 17005 (MERNMER) has no childs (in puttitri has some DEFAULT AND SMALL) - }else if (17005== speciesBatch.getSpecies().getIdAsInt()) { - nbChildren = 0; - } - - if (nbChildren != null) { - Assert.assertEquals("SpeciesBatch with species " + speciesDecorator.toString(speciesBatch.getSpecies()) + " should have with " + nbChildren + " but had " + speciesBatch.sizeChildBatchs(), nbChildren.intValue(), speciesBatch.sizeChildBatchs()); - } - - } - } -} Modified: trunk/tutti-service/src/test/resources/pupitri/ano-3898.car =================================================================== --- trunk/tutti-service/src/test/resources/pupitri/ano-3898.car 2014-05-05 14:59:13 UTC (rev 1752) +++ trunk/tutti-service/src/test/resources/pupitri/ano-3898.car 2014-05-05 15:00:37 UTC (rev 1753) @@ -1,381 +1,381 @@ -$TSMES,27/11/13,09:12:04.612,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.6, 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+$TSMES,27/11/13,19:26:47.870,BLCAR, 0,R0484,1,001,GLYPCYN,0,VAT,0000.2, +$TSMES,27/11/13,19:27:09.223,BLCAR, 0,R0484,1,001,TRISMIN,0,VAT,0000.6, +$TSMES,27/11/13,19:27:29.741,BLCAR, 0,R0484,1,001,ARGESPH,0,VAT,0000.2, +$TSMES,27/11/13,19:27:54.743,BLCAR, 0,R0484,1,001,TRACTRU,0,VAT,0000.2, +$TSMES,27/11/13,19:28:15.821,BLCAR, 0,R0484,1,002,NEPHNOR,0,VAT,0004.3, +$TSMES,27/11/13,19:28:40.581,BLCAR, 0,R0484,1,001,SEPIOLZ,0,VAT,0000.1, +$TSMES,27/11/13,19:29:00.043,BLCAR, 0,R0484,1,001,LOLIFOR,0,VAT,0000.1, +$TSMES,27/11/13,19:29:34.076,BLCAR, 0,R0484,1,001,ROSSMAC,0,VAT,0000.1, +$TSMES,27/11/13,19:30:00.792,BLCAR, 0,R0484,1,001,ELEDCIR,0,VAT,0000.6, +$TSMES,27/11/13,19:30:27.478,BLCAR, 0,R0484,1,001,TODAEBL,0,VAT,0000.1, Copied: trunk/tutti-service/src/test/resources/pupitri/ano-5032.car (from rev 1747, branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.car) =================================================================== --- trunk/tutti-service/src/test/resources/pupitri/ano-5032.car (rev 0) +++ trunk/tutti-service/src/test/resources/pupitri/ano-5032.car 2014-05-05 15:00:37 UTC (rev 1753) @@ -0,0 +1,8 @@ +$TSMES,27/11/13,09:12:04.612,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.6, +$TSMES,27/11/13,09:13:21.994,BLCAR, 0,A,1,002,MERLMNG,0,VAT,0018.9, +$TSMES,27/11/13,09:15:12.588,BLCAR, 0,A,1,002,ACAN-PEL,0,VAT,0021.4, +$TSMES,27/11/13,09:15:58.396,BLCAR, 0,A,1,002,ACANPEL,0,VAT,0017.9, +$TSMES,27/11/13,09:17:11.714,BLCAR, 0,A,1,002,ACANPAL,0,VAT,0017.2, +$TSMES,27/11/13,09:17:40.272,BLCAR, 0,A,1,002,ACAN-PAL,0,VAT,0021.1, +$TSMES,27/11/13,09:18:48.818,BLCAR, 0,A,1,002,ASRNATL,0,VAT,0018.0, +$TSMES,27/11/13,09:19:33.335,BLCAR, 0,A,1,002,ASRN-ATL,0,VAT,0016.6, \ No newline at end of file Copied: trunk/tutti-service/src/test/resources/pupitri/ano-5032.tnk (from rev 1747, branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.tnk) =================================================================== --- trunk/tutti-service/src/test/resources/pupitri/ano-5032.tnk (rev 0) +++ trunk/tutti-service/src/test/resources/pupitri/ano-5032.tnk 2014-05-05 15:00:37 UTC (rev 1753) @@ -0,0 +1,149 @@ +$TSMES,27/11/13,09:08:45.130,BLTNK, 0,A,1,VAT,0045.4, +$TSMES,27/11/13,09:10:10.522,BLTNK, 0,A,1,VAT,0045.0, +$TSMES,27/11/13,09:12:14.730,BLTNK, 0,A,1,VAT,0043.9, +$TSMES,27/11/13,09:14:06.033,BLTNK, 0,A,1,VAT,0044.0, +$TSMES,27/11/13,09:16:08.907,BLTNK, 0,A,1,VAT,0042.4, +$TSMES,27/11/13,09:17:47.515,BLTNK, 0,A,1,VAT,0044.3, +$TSMES,27/11/13,09:19:44.039,BLTNK, 0,A,1,VAT,0043.6, +$TSMES,27/11/13,09:21:49.166,BLTNK, 0,A,1,VAT,0044.2, +$TSMES,27/11/13,09:26:57.681,BLTNK, 0,A,1,VAT,0045.9, +$TSMES,27/11/13,09:29:20.020,BLTNK, 0,A,1,VAT,0045.8, +$TSMES,27/11/13,09:30:37.535,BLTNK, 0,A,1,VAT,0047.0, +$TSMES,27/11/13,09:32:16.153,BLTNK, 0,A,1,VAT,0046.6, +$TSMES,27/11/13,09:33:30.882,BLTNK, 0,A,1,VAT,0044.4, +$TSMES,27/11/13,09:34:50.649,BLTNK, 0,A,1,VAT,0044.5, +$TSMES,27/11/13,09:36:36.933,BLTNK, 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0,R0484,1,VAT,0046.7, +$TSMES,27/11/13,18:54:15.725,BLTNK, 0,R0484,1,VNT,0045.1, +$TSMES,27/11/13,18:55:55.559,BLTNK, 0,R0484,1,VNT,0045.7, +$TSMES,27/11/13,18:56:41.434,BLTNK, 0,R0484,1,VNT,0047.9, +$TSMES,27/11/13,18:59:41.649,BLTNK, 0,R0484,1,VAT,0045.3, +$TSMES,27/11/13,19:01:24.349,BLTNK, 0,R0484,1,VNT,0047.0, +$TSMES,27/11/13,19:02:31.112,BLTNK, 0,R0484,1,VNT,0045.2, +$TSMES,27/11/13,19:04:19.036,BLTNK, 0,R0484,1,VNT,0045.3, +$TSMES,27/11/13,19:05:39.010,BLTNK, 0,R0484,1,VAT,0048.6, +$TSMES,27/11/13,19:07:07.066,BLTNK, 0,R0484,1,VNT,0049.1, +$TSMES,27/11/13,19:07:47.001,BLTNK, 0,R0484,1,VNT,0042.7, +$TSMES,27/11/13,19:08:31.646,BLTNK, 0,R0484,1,VNT,0046.7, +$TSMES,27/11/13,19:09:18.030,BLTNK, 0,R0484,1,VAT,0046.4, +$TSMES,27/11/13,19:10:11.686,BLTNK, 0,R0484,1,VNT,0048.0, +$TSMES,27/11/13,19:10:57.668,BLTNK, 0,R0484,1,VNT,0045.6, +$TSMES,27/11/13,19:11:44.968,BLTNK, 0,R0484,1,VNT,0048.1, +$TSMES,27/11/13,19:15:02.592,BLTNK, 0,R0484,1,VAT,0040.2, +$TSMES,27/11/13,19:16:20.308,BLTNK, 0,R0484,1,VNT,0003.7, Added: trunk/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol =================================================================== --- trunk/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol (rev 0) +++ trunk/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol 2014-05-05 15:00:37 UTC (rev 1753) @@ -0,0 +1,81 @@ +id: c6ee2088-9720-46c0-b8d2-8f21c902676f +name: Protocole EVHOE 2013 +benthos: +comment: Protocole pour les tests 2013 avec Jean Jacques Rivoalen +gearUseFeaturePmfmId: +- 131 +- 828 +- 884 +- 965 +lengthClassesPmfmId: +- 306 +- 622 +- 307 +- 302 +- 299 +- 1394 +- 1417 +- 1425 +- 1426 +- 1427 +- 283 +- 284 +- 285 +- 294 +- 295 +- 300 +- 301 +- 304 +- 318 +- 319 +- 322 +- 323 +- 661 +- 662 +species: +- !SpeciesProtocol + id: 2a8122cf-d238-4820-a7b9-eacaf1f302bd + calcifySampleEnabled: true + countIfNoFrequencyEnabled: true + lengthStepPmfmId: 306 + mandatorySampleCategoryId: [] + speciesReferenceTaxonId: 1551 + speciesSurveyCode: MERLMNG + weightEnabled: true +- !SpeciesProtocol + id: 0de3f5c9-0ca9-4a7c-84aa-323d9eaa7f7f + countIfNoFrequencyEnabled: true + mandatorySampleCategoryId: [] + speciesReferenceTaxonId: 872 + speciesSurveyCode: ACAN-PEL + weightEnabled: true +- !SpeciesProtocol + id: ddffa4c9-cbb5-447f-a829-e2ac0cfea0f5 + countIfNoFrequencyEnabled: true + lengthStepPmfmId: 306 + mandatorySampleCategoryId: [] + speciesReferenceTaxonId: 1732 + speciesSurveyCode: ACANPAL + weightEnabled: true +vesselUseFeaturePmfmId: +- 173 +- 194 +- 230 +- 782 +- 843 +- 844 +- 846 +- 847 +- 848 +- 849 +- 850 +- 851 +- 857 +- 858 +- 859 +- 861 +- 862 +- 863 +- 881 +- 882 +- 883

1 0

r1752 - trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/util
by tchemit＠users.forge.codelutin.com 05 May '14

05 May '14

Author: tchemit Date: 2014-05-05 16:59:13 +0200 (Mon, 05 May 2014) New Revision: 1752 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1752 Log: refs #4958 (fix lazy exception when modifing a catch) Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/util/SynchronizationStatusHelper.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/util/SynchronizationStatusHelper.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/util/SynchronizationStatusHelper.java 2014-05-05 14:01:03 UTC (rev 1751) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/util/SynchronizationStatusHelper.java 2014-05-05 14:59:13 UTC (rev 1752) @@ -2,6 +2,7 @@ import fr.ifremer.adagio.core.dao.data.batch.Batch; import fr.ifremer.adagio.core.dao.data.batch.CatchBatch; +import fr.ifremer.adagio.core.dao.data.batch.CatchBatchImpl; import fr.ifremer.adagio.core.dao.data.sample.Sample; import fr.ifremer.adagio.core.dao.data.survey.fishingTrip.FishingTrip; import fr.ifremer.adagio.core.dao.data.survey.scientificCruise.ScientificCruise; @@ -11,6 +12,7 @@ import fr.ifremer.tutti.persistence.service.AbstractPersistenceService; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; +import org.hibernate.LazyInitializationException; import org.hibernate.type.IntegerType; import org.hibernate.type.StringType; import org.springframework.dao.DataIntegrityViolationException; @@ -49,11 +51,20 @@ public void setDirty(CatchBatch catchBatch) { String synchronizationStatus = getDirtyValue(); - catchBatch.setSynchronizationStatus(synchronizationStatus); + if (log.isInfoEnabled()) { log.info("SetDirty catchBatch: " + catchBatch.getId()); } - setDirty(catchBatch.getFishingOperation().getFishingTrip()); + catchBatch.setSynchronizationStatus(synchronizationStatus); + + try { + setDirty(catchBatch.getFishingOperation().getFishingTrip()); + } catch (LazyInitializationException e) { + + // We need to have a loaded catchBatch, since it can come from a cache, prefer to reload it here + CatchBatchImpl loadedCatchBatch = load(CatchBatchImpl.class, catchBatch.getId()); + loadedCatchBatch.setSynchronizationStatus(synchronizationStatus); + } } public void setDirty(Sample sample) {

1 0

r1751 - in trunk: tutti-service/src/main/java/fr/ifremer/tutti/service tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util
by tchemit＠users.forge.codelutin.com 05 May '14

05 May '14

Author: tchemit Date: 2014-05-05 16:01:03 +0200 (Mon, 05 May 2014) New Revision: 1751 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1751 Log: merge from refs #5032 (version 3.4.1) Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/DecoratorService.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/AbstractTuttiUIHandler.java Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/DecoratorService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/DecoratorService.java 2014-05-05 13:39:18 UTC (rev 1750) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/DecoratorService.java 2014-05-05 14:01:03 UTC (rev 1751) @@ -63,6 +63,7 @@ public static final String CARACTERISTIC_PARAMETER_ONLY = "parameterOnly"; + public static final String WITH_SURVEY_CODE = "withSurveyCode"; public static final String FROM_PROTOCOL = "fromProtocol"; public static final String GEAR_WITH_RANK_ORDER = "gearWithrankOrder"; @@ -141,6 +142,7 @@ registerTuttiDecorator(Program.class, ONLY_NAME, "${name}$s", SEPARATOR, " - "); registerDecorator(new SpeciesDecorator()); + registerDecorator(WITH_SURVEY_CODE, new SpeciesDecoratorWithSurveyCode()); registerDecorator(FROM_PROTOCOL, new SpeciesFromProtocolDecorator()); registerDecorator(CARACTERISTIC_WITH_UNIT, new SimpleCaracteristicDecorator("${parameterName}$s#${matrixName}$s#${fractionName}$s#${methodName}$s")); @@ -217,6 +219,31 @@ } } + public static class SpeciesDecoratorWithSurveyCode extends TuttiDecorator<Species> implements Cloneable { + + private static final long serialVersionUID = 1L; + + public SpeciesDecoratorWithSurveyCode() throws IllegalArgumentException, NullPointerException { + super(Species.class, "${surveyCode}$s#${name}$s", DecoratorService.SEPARATOR, " - "); + } + + @Override + protected Object onNullValue(Species bean, String token) { + Object result = null; + if (Species.PROPERTY_SURVEY_CODE.equals(token)) { + + // try with refTaxCode + result = bean.getRefTaxCode(); + + if (result ==null) { + + result = t("tutti.propety.no.species.speciesCode"); + } + } + return result; + } + } + public static class SimpleCaracteristicDecorator extends TuttiDecorator<Caracteristic> implements Cloneable { private static final long serialVersionUID = 1L; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/AbstractTuttiUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/AbstractTuttiUIHandler.java 2014-05-05 13:39:18 UTC (rev 1750) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/AbstractTuttiUIHandler.java 2014-05-05 14:01:03 UTC (rev 1751) @@ -414,7 +414,7 @@ String prefix, String suffix) { return buildReminderLabelTitle( - decorate(species), + decorate(species, DecoratorService.WITH_SURVEY_CODE), categories, prefix, suffix);

1 0

[ANN] - Tutti 3.4.1 released
by codelutin.com Release Notification 05 May '14

05 May '14

The Tutti team is pleased to announce the tutti-3.4.1 release! Outil de saisie de données d'opérations et de captures au cours des campagnes halieutiques. Documentation of the project can be found here: https://doc.codelutin.com/projects/tutti Changes ------- Changes in this version include: Fixed Bugs: o [MENSURATION] libellé du bandeau de l'écran : afficher CODE CAMPAGNE - NOM SCIENTIFIQUE et pas CODE RUBI N - NOM SCIENTIFIQUE Issue: 5033. Thanks to Vincent BADTS. Resolved by tchemit. o [IMPORT PUPITRI] mélange code campagnet code rubin Issue: 5032. Thanks to Vincent BADTS. Resolved by tchemit. Downloads --------- For a manual installation, you can download files here: http://forge.codelutin.com/projects/tutti/files * tutti-ichtyometer-3.4.1-tools.zip - http://forge.codelutin.com/attachments/download/1797 Maven artifacts --------------- Artifacts are deployed in nuiton maven repository http://maven.nuiton.org/other-releases/ Have fun! -Tutti team

1 0

r1750 - in branches/tutti-3.4.x: . tutti-ichtyometer tutti-persistence tutti-service tutti-ui-swing
by maven-release＠users.forge.codelutin.com 05 May '14

05 May '14

Author: maven-release Date: 2014-05-05 15:39:18 +0200 (Mon, 05 May 2014) New Revision: 1750 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1750 Log: [maven-release-plugin] prepare for next development iteration Modified: branches/tutti-3.4.x/pom.xml branches/tutti-3.4.x/tutti-ichtyometer/pom.xml branches/tutti-3.4.x/tutti-persistence/pom.xml branches/tutti-3.4.x/tutti-service/pom.xml branches/tutti-3.4.x/tutti-ui-swing/pom.xml Modified: branches/tutti-3.4.x/pom.xml =================================================================== --- branches/tutti-3.4.x/pom.xml 2014-05-05 13:39:11 UTC (rev 1749) +++ branches/tutti-3.4.x/pom.xml 2014-05-05 13:39:18 UTC (rev 1750) @@ -32,7 +32,7 @@ <groupId>fr.ifremer</groupId> <artifactId>tutti</artifactId> - <version>3.4.1</version> + <version>3.4.2-SNAPSHOT</version> <packaging>pom</packaging> <name>Tutti</name> @@ -99,13 +99,13 @@ <scm> <url> - https://forge.codelutin.com/projects/tutti/repository/tags/tutti-3.4.1 + https://forge.codelutin.com/projects/tutti/repository/branches/tutti-3.4.x </url> <connection> - scm:svn:http://svn.codelutin.com/tutti/tags/tutti-3.4.1 + scm:svn:http://svn.codelutin.com/tutti/branches/tutti-3.4.x </connection> <developerConnection> - scm:svn:https://svn.codelutin.com/tutti/tags/tutti-3.4.1 + scm:svn:https://svn.codelutin.com/tutti/branches/tutti-3.4.x </developerConnection> </scm> <distributionManagement> Modified: branches/tutti-3.4.x/tutti-ichtyometer/pom.xml =================================================================== --- branches/tutti-3.4.x/tutti-ichtyometer/pom.xml 2014-05-05 13:39:11 UTC (rev 1749) +++ branches/tutti-3.4.x/tutti-ichtyometer/pom.xml 2014-05-05 13:39:18 UTC (rev 1750) @@ -27,7 +27,7 @@ <parent> <groupId>fr.ifremer</groupId> <artifactId>tutti</artifactId> - <version>3.4.1</version> + <version>3.4.2-SNAPSHOT</version> </parent> <groupId>fr.ifremer.tutti</groupId> Modified: branches/tutti-3.4.x/tutti-persistence/pom.xml =================================================================== --- branches/tutti-3.4.x/tutti-persistence/pom.xml 2014-05-05 13:39:11 UTC (rev 1749) +++ branches/tutti-3.4.x/tutti-persistence/pom.xml 2014-05-05 13:39:18 UTC (rev 1750) @@ -27,7 +27,7 @@ <parent> <groupId>fr.ifremer</groupId> <artifactId>tutti</artifactId> - <version>3.4.1</version> + <version>3.4.2-SNAPSHOT</version> </parent> <groupId>fr.ifremer.tutti</groupId> Modified: branches/tutti-3.4.x/tutti-service/pom.xml =================================================================== --- branches/tutti-3.4.x/tutti-service/pom.xml 2014-05-05 13:39:11 UTC (rev 1749) +++ branches/tutti-3.4.x/tutti-service/pom.xml 2014-05-05 13:39:18 UTC (rev 1750) @@ -27,7 +27,7 @@ <parent> <groupId>fr.ifremer</groupId> <artifactId>tutti</artifactId> - <version>3.4.1</version> + <version>3.4.2-SNAPSHOT</version> </parent> <groupId>fr.ifremer.tutti</groupId> Modified: branches/tutti-3.4.x/tutti-ui-swing/pom.xml =================================================================== --- branches/tutti-3.4.x/tutti-ui-swing/pom.xml 2014-05-05 13:39:11 UTC (rev 1749) +++ branches/tutti-3.4.x/tutti-ui-swing/pom.xml 2014-05-05 13:39:18 UTC (rev 1750) @@ -27,7 +27,7 @@ <parent> <groupId>fr.ifremer</groupId> <artifactId>tutti</artifactId> - <version>3.4.1</version> + <version>3.4.2-SNAPSHOT</version> </parent> <groupId>fr.ifremer.tutti</groupId>

1 0

r1749 - tags
by maven-release＠users.forge.codelutin.com 05 May '14

05 May '14

Author: maven-release Date: 2014-05-05 15:39:11 +0200 (Mon, 05 May 2014) New Revision: 1749 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1749 Log: [maven-release-plugin] copy for tag tutti-3.4.1 Added: tags/tutti-3.4.1/

1 0

r1748 - in branches/tutti-3.4.x: . tutti-ichtyometer tutti-persistence tutti-service tutti-ui-swing
by maven-release＠users.forge.codelutin.com 05 May '14

05 May '14

Author: maven-release Date: 2014-05-05 15:39:01 +0200 (Mon, 05 May 2014) New Revision: 1748 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1748 Log: [maven-release-plugin] prepare release tutti-3.4.1 Modified: branches/tutti-3.4.x/pom.xml branches/tutti-3.4.x/tutti-ichtyometer/pom.xml branches/tutti-3.4.x/tutti-persistence/pom.xml branches/tutti-3.4.x/tutti-service/pom.xml branches/tutti-3.4.x/tutti-ui-swing/pom.xml Modified: branches/tutti-3.4.x/pom.xml =================================================================== --- branches/tutti-3.4.x/pom.xml 2014-05-05 13:31:26 UTC (rev 1747) +++ branches/tutti-3.4.x/pom.xml 2014-05-05 13:39:01 UTC (rev 1748) @@ -32,7 +32,7 @@ <groupId>fr.ifremer</groupId> <artifactId>tutti</artifactId> - <version>3.4.1-SNAPSHOT</version> + <version>3.4.1</version> <packaging>pom</packaging> <name>Tutti</name> @@ -99,13 +99,13 @@ <scm> <url> - https://forge.codelutin.com/projects/tutti/repository/branches/tutti-3.4.x + https://forge.codelutin.com/projects/tutti/repository/tags/tutti-3.4.1 </url> <connection> - scm:svn:http://svn.codelutin.com/tutti/branches/tutti-3.4.x + scm:svn:http://svn.codelutin.com/tutti/tags/tutti-3.4.1 </connection> <developerConnection> - scm:svn:https://svn.codelutin.com/tutti/branches/tutti-3.4.x + scm:svn:https://svn.codelutin.com/tutti/tags/tutti-3.4.1 </developerConnection> </scm> <distributionManagement> Modified: branches/tutti-3.4.x/tutti-ichtyometer/pom.xml =================================================================== --- branches/tutti-3.4.x/tutti-ichtyometer/pom.xml 2014-05-05 13:31:26 UTC (rev 1747) +++ branches/tutti-3.4.x/tutti-ichtyometer/pom.xml 2014-05-05 13:39:01 UTC (rev 1748) @@ -27,7 +27,7 @@ <parent> <groupId>fr.ifremer</groupId> <artifactId>tutti</artifactId> - <version>3.4.1-SNAPSHOT</version> + <version>3.4.1</version> </parent> <groupId>fr.ifremer.tutti</groupId> Modified: branches/tutti-3.4.x/tutti-persistence/pom.xml =================================================================== --- branches/tutti-3.4.x/tutti-persistence/pom.xml 2014-05-05 13:31:26 UTC (rev 1747) +++ branches/tutti-3.4.x/tutti-persistence/pom.xml 2014-05-05 13:39:01 UTC (rev 1748) @@ -27,7 +27,7 @@ <parent> <groupId>fr.ifremer</groupId> <artifactId>tutti</artifactId> - <version>3.4.1-SNAPSHOT</version> + <version>3.4.1</version> </parent> <groupId>fr.ifremer.tutti</groupId> Modified: branches/tutti-3.4.x/tutti-service/pom.xml =================================================================== --- branches/tutti-3.4.x/tutti-service/pom.xml 2014-05-05 13:31:26 UTC (rev 1747) +++ branches/tutti-3.4.x/tutti-service/pom.xml 2014-05-05 13:39:01 UTC (rev 1748) @@ -27,7 +27,7 @@ <parent> <groupId>fr.ifremer</groupId> <artifactId>tutti</artifactId> - <version>3.4.1-SNAPSHOT</version> + <version>3.4.1</version> </parent> <groupId>fr.ifremer.tutti</groupId> Modified: branches/tutti-3.4.x/tutti-ui-swing/pom.xml =================================================================== --- branches/tutti-3.4.x/tutti-ui-swing/pom.xml 2014-05-05 13:31:26 UTC (rev 1747) +++ branches/tutti-3.4.x/tutti-ui-swing/pom.xml 2014-05-05 13:39:01 UTC (rev 1748) @@ -27,7 +27,7 @@ <parent> <groupId>fr.ifremer</groupId> <artifactId>tutti</artifactId> - <version>3.4.1-SNAPSHOT</version> + <version>3.4.1</version> </parent> <groupId>fr.ifremer.tutti</groupId>

1 0

r1747 - in branches/tutti-3.4.x: tutti-persistence/src/main/java/fr/ifremer/tutti/persistence tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri tutti-service/src/test/resources/pupitri
by tchemit＠users.forge.codelutin.com 05 May '14

05 May '14

Author: tchemit Date: 2014-05-05 15:31:26 +0200 (Mon, 05 May 2014) New Revision: 1747 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1747 Log: fixes #5032 Added: branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.car branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.tnk branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol Removed: branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java Modified: branches/tutti-3.4.x/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java branches/tutti-3.4.x/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java branches/tutti-3.4.x/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java branches/tutti-3.4.x/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-3898.car Modified: branches/tutti-3.4.x/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java =================================================================== --- branches/tutti-3.4.x/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2014-05-05 13:17:39 UTC (rev 1746) +++ branches/tutti-3.4.x/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2014-05-05 13:31:26 UTC (rev 1747) @@ -650,28 +650,32 @@ Map<String, Species> map = TuttiEntities.splitByTaxonId(allReferentSpecies); - Iterator<SpeciesProtocol> iterator = protocol.getSpecies().iterator(); - while (iterator.hasNext()) { - SpeciesProtocol speciesProtocol = iterator.next(); - String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId()); - Species species = map.get(taxonId); - if (species == null) { - if (log.isWarnEnabled()) { - log.warn("Could not find protocol species " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential."); + if (!protocol.isSpeciesEmpty()) { + Iterator<SpeciesProtocol> iterator = protocol.getSpecies().iterator(); + while (iterator.hasNext()) { + SpeciesProtocol speciesProtocol = iterator.next(); + String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId()); + Species species = map.get(taxonId); + if (species == null) { + if (log.isWarnEnabled()) { + log.warn("Could not find protocol species " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential."); + } + iterator.remove(); } - iterator.remove(); } } - iterator = protocol.getBenthos().iterator(); - while (iterator.hasNext()) { - SpeciesProtocol speciesProtocol = iterator.next(); - String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId()); - Species species = map.get(taxonId); - if (species == null) { - if (log.isWarnEnabled()) { - log.warn("Could not find protocol benthos " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential."); + if (!protocol.isBenthosEmpty()) { + Iterator<SpeciesProtocol> iterator = protocol.getBenthos().iterator(); + while (iterator.hasNext()) { + SpeciesProtocol speciesProtocol = iterator.next(); + String taxonId = String.valueOf(speciesProtocol.getSpeciesReferenceTaxonId()); + Species species = map.get(taxonId); + if (species == null) { + if (log.isWarnEnabled()) { + log.warn("Could not find protocol benthos " + taxonId + " (" + speciesProtocol.getSpeciesSurveyCode() + ") in referential."); + } + iterator.remove(); } - iterator.remove(); } } return protocol; @@ -962,20 +966,24 @@ Map<Integer, String> surveyCodeByTaxonId = Maps.newTreeMap(); - for (SpeciesProtocol speciesProtocol : protocol.getSpecies()) { - String surveyCode = speciesProtocol.getSpeciesSurveyCode(); - if (StringUtils.isNotBlank(surveyCode)) { - Integer taxonId = - speciesProtocol.getSpeciesReferenceTaxonId(); - surveyCodeByTaxonId.put(taxonId, surveyCode); + if (!protocol.isSpeciesEmpty()) { + for (SpeciesProtocol speciesProtocol : protocol.getSpecies()) { + String surveyCode = speciesProtocol.getSpeciesSurveyCode(); + if (StringUtils.isNotBlank(surveyCode)) { + Integer taxonId = + speciesProtocol.getSpeciesReferenceTaxonId(); + surveyCodeByTaxonId.put(taxonId, surveyCode); + } } } - for (SpeciesProtocol speciesProtocol : protocol.getBenthos()) { - String surveyCode = speciesProtocol.getSpeciesSurveyCode(); - if (StringUtils.isNotBlank(surveyCode)) { - Integer taxonId = - speciesProtocol.getSpeciesReferenceTaxonId(); - surveyCodeByTaxonId.put(taxonId, surveyCode); + if (!protocol.isBenthosEmpty()) { + for (SpeciesProtocol speciesProtocol : protocol.getBenthos()) { + String surveyCode = speciesProtocol.getSpeciesSurveyCode(); + if (StringUtils.isNotBlank(surveyCode)) { + Integer taxonId = + speciesProtocol.getSpeciesReferenceTaxonId(); + surveyCodeByTaxonId.put(taxonId, surveyCode); + } } } for (Species species : speciesList) { Modified: branches/tutti-3.4.x/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java =================================================================== --- branches/tutti-3.4.x/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java 2014-05-05 13:17:39 UTC (rev 1746) +++ branches/tutti-3.4.x/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java 2014-05-05 13:31:26 UTC (rev 1747) @@ -147,6 +147,10 @@ return Multimaps.index(list, GET_REF_TAX_CODE); } + public static Multimap<String, Species> splitBySurveyCode(Iterable<Species> list) { + return Multimaps.index(list, GET_SURVEY_CODE); + } + public static final Function<Species, String> GET_TAXON_ID = new Function<Species, String>() { @Override public String apply(Species input) { @@ -161,6 +165,13 @@ } }; + public static final Function<Species, String> GET_SURVEY_CODE = new Function<Species, String>() { + @Override + public String apply(Species input) { + return String.valueOf(input.getSurveyCode()); + } + }; + public static final Function<TuttiEntity, String> GET_ID = new Function<TuttiEntity, String>() { @Override public String apply(TuttiEntity input) { @@ -515,7 +526,7 @@ public static float roundKiloGram(float value) { BigDecimal sumB = new BigDecimal(value); float result; - if (Math.abs(value - sumB.floatValue())< 0.0001f) { + if (Math.abs(value - sumB.floatValue()) < 0.0001f) { result = value; } else { result = sumB.abs(MATH_CONTEXT_4_DIGIT).floatValue(); Modified: branches/tutti-3.4.x/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java =================================================================== --- branches/tutti-3.4.x/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java 2014-05-05 13:17:39 UTC (rev 1746) +++ branches/tutti-3.4.x/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java 2014-05-05 13:31:26 UTC (rev 1747) @@ -25,11 +25,7 @@ */ import fr.ifremer.tutti.service.TuttiCsvUtil; -import org.apache.commons.lang3.StringUtils; -import org.nuiton.csv.ValueParser; -import java.text.ParseException; - /** * @author kmorin <kmorin(a)codelutin.com> * @since 1.2 @@ -41,13 +37,7 @@ newMandatoryColumn(CarrouselRow.PROPERTY_OPERATION_CODE); newMandatoryColumn(CarrouselRow.PROPERTY_RIG_NUMBER); - newMandatoryColumn(CarrouselRow.PROPERTY_SPECIES_ID, new ValueParser<String>() { - - @Override - public String parse(String string) throws ParseException { - return StringUtils.remove(string, '-').trim(); - } - }); + newMandatoryColumn(CarrouselRow.PROPERTY_SPECIES_ID); newMandatoryColumn(CarrouselRow.PROPERTY_SIGN); newMandatoryColumn(CarrouselRow.PROPERTY_DIRECTION, TuttiCsvUtil.newEnumByNameParserFormatter(Directions.class)); Modified: branches/tutti-3.4.x/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java =================================================================== --- branches/tutti-3.4.x/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java 2014-05-05 13:17:39 UTC (rev 1746) +++ branches/tutti-3.4.x/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriImportExportService.java 2014-05-05 13:31:26 UTC (rev 1747) @@ -30,10 +30,7 @@ import com.google.common.collect.ListMultimap; import com.google.common.collect.Lists; import com.google.common.collect.Maps; -import com.google.common.collect.Multimaps; import com.google.common.collect.Sets; -import org.nuiton.jaxx.application.ApplicationIOUtil; -import org.nuiton.jaxx.application.ApplicationTechnicalException; import fr.ifremer.tutti.persistence.entities.TuttiEntities; import fr.ifremer.tutti.persistence.entities.data.AttachementObjectTypeEnum; import fr.ifremer.tutti.persistence.entities.data.Attachment; @@ -63,6 +60,8 @@ import org.nuiton.csv.Export; import org.nuiton.csv.Import; import org.nuiton.decorator.Decorator; +import org.nuiton.jaxx.application.ApplicationIOUtil; +import org.nuiton.jaxx.application.ApplicationTechnicalException; import java.io.File; import java.io.IOException; @@ -74,8 +73,8 @@ import java.util.Map; import java.util.Set; +import static org.nuiton.i18n.I18n.n; import static org.nuiton.i18n.I18n.t; -import static org.nuiton.i18n.I18n.n; /** * @author kmorin <kmorin(a)codelutin.com> @@ -149,7 +148,7 @@ PupitriImportResult result = new PupitriImportResult(trunkFile, carrouselFile); - importPupitriTrunk(result, trunkFile, operation, catchBatch); + importPupitriTrunk(result, trunkFile, operation); importPupitriCarrousel(result, carrouselFile, operation, catchBatch); if (result.isFishingOperationFound()) { @@ -203,9 +202,7 @@ persistenceService.createAttachment(attachment, f); } - protected void importPupitriTrunk(PupitriImportResult result, File file, - FishingOperation operation, - CatchBatch catchBatch) { + protected void importPupitriTrunk(PupitriImportResult result, File file, FishingOperation operation) { if (log.isInfoEnabled()) { log.info("Will import pupitri operation [" + operation.toString() + @@ -278,17 +275,20 @@ // get the map of species by survey code ListMultimap<String, Species> speciesBySurveyCode = ArrayListMultimap.create(); - speciesBySurveyCode.putAll( - Multimaps.index(dataContext.getReferentSpeciesWithSurveyCode(), - new Function<Species, String>() { - @Override - public String apply(Species input) { - String surveyCode = String.valueOf(input.getSurveyCode()); - int end = Math.min(surveyCode.length(), 7); - return surveyCode.substring(0, end); - } - }) - ); +// speciesBySurveyCode.putAll( +// Multimaps.index(dataContext.getReferentSpeciesWithSurveyCode(), +// new Function<Species, String>() { +// @Override +// public String apply(Species input) { +// String surveyCode = String.valueOf(input.getSurveyCode()); +// int end = Math.min(surveyCode.length(), 7); +// return surveyCode.substring(0, end); +// } +// }) +// ); +// speciesBySurveyCode.putAll(TuttiEntities.splitByRefTaxCode(dataContext.getReferentSpecies())); + + speciesBySurveyCode.putAll(TuttiEntities.splitBySurveyCode(dataContext.getReferentSpeciesWithSurveyCode())); speciesBySurveyCode.putAll(TuttiEntities.splitByRefTaxCode(dataContext.getReferentSpecies())); // import the batches Copied: branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java (from rev 1744, branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java) =================================================================== --- branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java (rev 0) +++ branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno3898Test.java 2014-05-05 13:31:26 UTC (rev 1747) @@ -0,0 +1,137 @@ +package fr.ifremer.tutti.service.pupitri; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.TuttiConfigurationOption; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.DecoratorService; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.ServiceDbResource; +import fr.ifremer.tutti.service.TuttiServiceContext; +import org.junit.Assert; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; +import org.nuiton.decorator.Decorator; + +import java.io.File; +import java.io.IOException; + +/** + * @author tchemit <chemit(a)codelutin.com> + * @since 3.0-rc-2 + */ +public class PupitriImportServiceAno3898Test { + + @ClassRule + public static final ServiceDbResource dbResource = + ServiceDbResource.writeDb("dbExport"); + + public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; + + public static final String CRUISE_ID = "100003"; + + public static final String OPERATION_1_ID = "100112"; + + public static final String OPERATION_2_ID = "100113"; + + public static final String OPERATION_3_ID = "100115"; + + protected PupitriImportExportService service; + + protected PersistenceService persistenceService; + + protected DecoratorService decoratorService; + + protected ServiceDbResource.DataContext dataContext; + + @Before + public void setUp() throws Exception { + + TuttiServiceContext serviceContext = dbResource.getServiceContext(); + + persistenceService = serviceContext.getService(PersistenceService.class); + + decoratorService = serviceContext.getService(DecoratorService.class); + + dbResource.openDataContext(); + + service = serviceContext.getService(PupitriImportExportService.class); + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 3, + OPERATION_2_ID, + OPERATION_1_ID, + OPERATION_3_ID); + } + + @Test + public void importPupitri() throws IOException { + + File trunk = dbResource.copyClassPathResource("pupitri/ano-3898.tnk", "pupitri.tnk"); + File carroussel = dbResource.copyClassPathResource("pupitri/ano-3898.car", "pupitri.car"); + File protocol = dbResource.copyClassPathResource("pupitri/ano-3898.tuttiProtocol", "ano-3898.tuttiProtocol"); + dbResource.getConfig().getApplicationConfig().setOption(TuttiConfigurationOption.DB_PROTOCOL_DIRECTORY.getKey(), protocol.getParentFile().getAbsolutePath()); + TuttiProtocol protocol1 = persistenceService.getProtocol("ano-3898"); + persistenceService.setProtocol(protocol1); + + FishingOperation operation = dataContext.operations.get(1); + CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation(operation.getId()); + catchBatch.setFishingOperation(operation); + + BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(operation.getId(), null); + Assert.assertEquals(3, rootSpeciesBatch.sizeChildren()); + int nbNotAdded = service.importPupitri(trunk, carroussel, operation, catchBatch).getNbCarrousselNotImported(); + Assert.assertEquals(0, nbNotAdded); + BatchContainer<SpeciesBatch> rootSpeciesBatchAfter = persistenceService.getRootSpeciesBatch(operation.getId(), null); + Assert.assertEquals(31, rootSpeciesBatchAfter.sizeChildren()); + + Decorator<Species> speciesDecorator = decoratorService.getDecoratorByType(Species.class); + + for (SpeciesBatch speciesBatch : rootSpeciesBatchAfter.getChildren()) { + + Integer nbChildren = null; + // species 17003 (MELAAEG) has two childs (SMALL - BIG) + if (17003 == speciesBatch.getSpecies().getIdAsInt()) { + nbChildren = 2; + // species 37312 (LOLIFOR) has no childs (in puttitri has some DEFAULT AND SMALL) + } else if (37312 == speciesBatch.getSpecies().getIdAsInt()) { + nbChildren = 0; + // species 17005 (MERNMER) has no childs (in puttitri has some DEFAULT AND SMALL) + } else if (17005 == speciesBatch.getSpecies().getIdAsInt()) { + nbChildren = 0; + } + + if (nbChildren != null) { + Assert.assertEquals("SpeciesBatch with species " + speciesDecorator.toString(speciesBatch.getSpecies()) + " should have with " + nbChildren + " but had " + speciesBatch.sizeChildBatchs(), nbChildren.intValue(), speciesBatch.sizeChildBatchs()); + } + + } + } +} Added: branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java =================================================================== --- branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java (rev 0) +++ branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java 2014-05-05 13:31:26 UTC (rev 1747) @@ -0,0 +1,152 @@ +package fr.ifremer.tutti.service.pupitri; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL: https://svn.codelutin.com/tutti/branches/3.3.6/tutti-service/src/test/java/… $ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.collect.Sets; +import fr.ifremer.tutti.TuttiConfigurationOption; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.DecoratorService; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.ServiceDbResource; +import fr.ifremer.tutti.service.TuttiServiceContext; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.junit.Assert; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; +import org.nuiton.decorator.Decorator; + +import java.io.File; +import java.io.IOException; +import java.util.Set; + +/** + * @author tchemit <chemit(a)codelutin.com> + * @since 3.0-rc-2 + */ +public class PupitriImportServiceAno5032Test { + + /** Logger. */ + private static final Log log = LogFactory.getLog(PupitriImportServiceAno5032Test.class); + + @ClassRule + public static final ServiceDbResource dbResource = + ServiceDbResource.writeDb("dbExport"); + + public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; + + public static final String CRUISE_ID = "100003"; + + public static final String OPERATION_1_ID = "100112"; + + public static final String OPERATION_2_ID = "100113"; + + public static final String OPERATION_3_ID = "100115"; + + protected PupitriImportExportService service; + + protected PersistenceService persistenceService; + + protected DecoratorService decoratorService; + + protected ServiceDbResource.DataContext dataContext; + + @Before + public void setUp() throws Exception { + + TuttiServiceContext serviceContext = dbResource.getServiceContext(); + + persistenceService = serviceContext.getService(PersistenceService.class); + + decoratorService = serviceContext.getService(DecoratorService.class); + + dbResource.openDataContext(); + + service = serviceContext.getService(PupitriImportExportService.class); + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 3, + OPERATION_2_ID, + OPERATION_1_ID, + OPERATION_3_ID); + } + + @Test + public void importPupitri() throws IOException { + + File trunk = dbResource.copyClassPathResource("pupitri/ano-5032.tnk", "pupitri.tnk"); + File carroussel = dbResource.copyClassPathResource("pupitri/ano-5032.car", "pupitri.car"); + File protocol = dbResource.copyClassPathResource("pupitri/ano-5032.tuttiProtocol", "ano-5032.tuttiProtocol"); + dbResource.getConfig().getApplicationConfig().setOption(TuttiConfigurationOption.DB_PROTOCOL_DIRECTORY.getKey(), protocol.getParentFile().getAbsolutePath()); + TuttiProtocol protocol1 = persistenceService.getProtocol("ano-5032"); + persistenceService.setProtocol(protocol1); + + FishingOperation operation = dataContext.operations.get(1); + CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation(operation.getId()); + catchBatch.setFishingOperation(operation); + + BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(operation.getId(), null); + Assert.assertEquals(3, rootSpeciesBatch.sizeChildren()); + int nbNotAdded = service.importPupitri(trunk, carroussel, operation, catchBatch).getNbCarrousselNotImported(); + Assert.assertEquals(4, nbNotAdded); + BatchContainer<SpeciesBatch> rootSpeciesBatchAfter = persistenceService.getRootSpeciesBatch(operation.getId(), null); + Assert.assertEquals(4, rootSpeciesBatchAfter.sizeChildren()); + + Set<Integer> unexpectedSpecies = Sets.newHashSet( + ); + Set<Integer> expectedSpecies = Sets.newHashSet( + 17005, // MERNMER + 17186, // ACATPAL + 16328, // ACAPPEL + 20788 // ASRNATL + ); + + Decorator<Species> speciesDecorator = decoratorService.getDecoratorByType(Species.class); + + for (SpeciesBatch speciesBatch : rootSpeciesBatchAfter.getChildren()) { + + Species species = speciesBatch.getSpecies(); + Integer speciesId = species.getIdAsInt(); + boolean remove = expectedSpecies.remove(speciesId); + if (log.isInfoEnabled()) { + log.info("Species : " + speciesId + " : " + speciesDecorator.toString(species)); + } + if (!remove) { + unexpectedSpecies.add(speciesId); + if (log.isWarnEnabled()) { + log.warn("Unexpected Species " + speciesId); + } + } + } + + Assert.assertTrue("Expected species not found: " + expectedSpecies, expectedSpecies.isEmpty()); + Assert.assertTrue("Unexpected species found: " + unexpectedSpecies, unexpectedSpecies.isEmpty()); + } +} Property changes on: branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceAno5032Test.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision Added: svn:eol-style + native Deleted: branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java =================================================================== --- branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java 2014-05-05 13:17:39 UTC (rev 1746) +++ branches/tutti-3.4.x/tutti-service/src/test/java/fr/ifremer/tutti/service/pupitri/PupitriImportServiceTest.java 2014-05-05 13:31:26 UTC (rev 1747) @@ -1,138 +0,0 @@ -package fr.ifremer.tutti.service.pupitri; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.TuttiConfigurationOption; -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.service.DecoratorService; -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.ServiceDbResource; -import fr.ifremer.tutti.service.TuttiServiceContext; -import org.junit.Assert; -import org.junit.Before; -import org.junit.ClassRule; -import org.junit.Test; -import org.nuiton.decorator.Decorator; - -import java.io.File; -import java.io.IOException; - -/** - * @author tchemit <chemit(a)codelutin.com> - * @since 3.0-rc-2 - */ -public class PupitriImportServiceTest { - - @ClassRule - public static final ServiceDbResource dbResource = - ServiceDbResource.writeDb("dbExport"); - - public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; - - public static final String CRUISE_ID = "100003"; - - public static final String OPERATION_1_ID = "100112"; - - public static final String OPERATION_2_ID = "100113"; - - public static final String OPERATION_3_ID = "100115"; - - protected PupitriImportExportService service; - - protected PersistenceService persistenceService; - - protected DecoratorService decoratorService; - - protected ServiceDbResource.DataContext dataContext; - - @Before - public void setUp() throws Exception { - - TuttiServiceContext serviceContext = dbResource.getServiceContext(); - - persistenceService = serviceContext.getService(PersistenceService.class); - - decoratorService = serviceContext.getService(DecoratorService.class); - - dbResource.openDataContext(); - - service = serviceContext.getService(PupitriImportExportService.class); - - dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 3, - OPERATION_2_ID, - OPERATION_1_ID, - OPERATION_3_ID); - } - - @Test - public void importPupitriANO3898() throws IOException { - - File trunk = dbResource.copyClassPathResource("pupitri/ano-3898.tnk", "pupitri.tnk"); - File carroussel = dbResource.copyClassPathResource("pupitri/ano-3898.car", "pupitri.car"); - File protocol = dbResource.copyClassPathResource("pupitri/ano-3898.tuttiProtocol", "ano-3898.tuttiProtocol"); - dbResource.getConfig().getApplicationConfig().setOption(TuttiConfigurationOption.DB_PROTOCOL_DIRECTORY.getKey(), protocol.getParentFile().getAbsolutePath()); - TuttiProtocol protocol1 = persistenceService.getProtocol("ano-3898"); - persistenceService.setProtocol(protocol1); - - FishingOperation operation = dataContext.operations.get(1); - CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation(operation.getId()); - catchBatch.setFishingOperation(operation); - - BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(operation.getId(), null); - Assert.assertEquals(3, rootSpeciesBatch.sizeChildren()); - int nbNotAdded = service.importPupitri(trunk, carroussel, operation, catchBatch).getNbCarrousselNotImported(); - Assert.assertEquals(0, nbNotAdded); - BatchContainer<SpeciesBatch> rootSpeciesBatchAfter = persistenceService.getRootSpeciesBatch(operation.getId(), null); - Assert.assertEquals(31, rootSpeciesBatchAfter.sizeChildren()); - - Decorator<Species> speciesDecorator = decoratorService.getDecoratorByType(Species.class); - -// int index = 0; - for (SpeciesBatch speciesBatch : rootSpeciesBatchAfter.getChildren()) { - - Integer nbChildren = null; - // species 17003 (MELAAEG) has two childs (SMALL - BIG) - if (17003 == speciesBatch.getSpecies().getIdAsInt()) { - nbChildren = 2; - // species 37312 (LOLIFOR) has no childs (in puttitri has some DEFAULT AND SMALL) - } else if (37312 == speciesBatch.getSpecies().getIdAsInt()) { - nbChildren = 0; - // species 17005 (MERNMER) has no childs (in puttitri has some DEFAULT AND SMALL) - }else if (17005== speciesBatch.getSpecies().getIdAsInt()) { - nbChildren = 0; - } - - if (nbChildren != null) { - Assert.assertEquals("SpeciesBatch with species " + speciesDecorator.toString(speciesBatch.getSpecies()) + " should have with " + nbChildren + " but had " + speciesBatch.sizeChildBatchs(), nbChildren.intValue(), speciesBatch.sizeChildBatchs()); - } - - } - } -} Modified: branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-3898.car =================================================================== --- branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-3898.car 2014-05-05 13:17:39 UTC (rev 1746) +++ branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-3898.car 2014-05-05 13:31:26 UTC (rev 1747) @@ -1,381 +1,381 @@ -$TSMES,27/11/13,09:12:04.612,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.6, -$TSMES,27/11/13,09:13:21.994,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0018.9, -$TSMES,27/11/13,09:15:12.588,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0021.4, -$TSMES,27/11/13,09:15:58.396,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0017.9, -$TSMES,27/11/13,09:17:11.714,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0017.2, -$TSMES,27/11/13,09:17:40.272,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0021.1, -$TSMES,27/11/13,09:18:48.818,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0018.0, -$TSMES,27/11/13,09:19:33.335,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0016.6, -$TSMES,27/11/13,09:21:16.442,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.8, -$TSMES,27/11/13,09:21:40.776,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0022.8, -$TSMES,27/11/13,09:22:45.945,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0016.1, -$TSMES,27/11/13,09:26:51.656,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0019.1, -$TSMES,27/11/13,09:27:53.133,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0016.5, -$TSMES,27/11/13,09:28:17.445,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0018.4, -$TSMES,27/11/13,09:31:22.362,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0014.6, -$TSMES,27/11/13,09:31:45.650,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0018.4, -$TSMES,27/11/13,09:32:05.512,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0023.0, -$TSMES,27/11/13,09:33:00.869,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0014.2, -$TSMES,27/11/13,09:33:24.472,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0012.8, -$TSMES,27/11/13,09:34:25.343,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.8, -$TSMES,27/11/13,09:34:44.541,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0021.0, -$TSMES,27/11/13,09:36:02.174,BLCAR, 0,A,1,001,NEPH-NOR,0,VAT,0006.3, -$TSMES,27/11/13,09:36:30.632,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0024.1, -$TSMES,27/11/13,09:37:25.749,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0017.5, -$TSMES,27/11/13,09:37:47.056,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0018.3, -$TSMES,27/11/13,09:38:44.513,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0018.5, -$TSMES,27/11/13,09:40:34.621,BLCAR, 0,A,1,002,TRIS-ESM,0,VAT,0015.8, -$TSMES,27/11/13,09:41:28.855,BLCAR, 0,A,1,002,CLUP-HAR,0,VAT,0011.3, -$TSMES,27/11/13,09:42:39.349,BLCAR, 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branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.car 2014-05-05 13:31:26 UTC (rev 1747) @@ -0,0 +1,8 @@ +$TSMES,27/11/13,09:12:04.612,BLCAR, 0,A,1,002,MERL-MNG,0,VAT,0015.6, +$TSMES,27/11/13,09:13:21.994,BLCAR, 0,A,1,002,MERLMNG,0,VAT,0018.9, +$TSMES,27/11/13,09:15:12.588,BLCAR, 0,A,1,002,ACAN-PEL,0,VAT,0021.4, +$TSMES,27/11/13,09:15:58.396,BLCAR, 0,A,1,002,ACANPEL,0,VAT,0017.9, +$TSMES,27/11/13,09:17:11.714,BLCAR, 0,A,1,002,ACANPAL,0,VAT,0017.2, +$TSMES,27/11/13,09:17:40.272,BLCAR, 0,A,1,002,ACAN-PAL,0,VAT,0021.1, +$TSMES,27/11/13,09:18:48.818,BLCAR, 0,A,1,002,ASRNATL,0,VAT,0018.0, +$TSMES,27/11/13,09:19:33.335,BLCAR, 0,A,1,002,ASRN-ATL,0,VAT,0016.6, \ No newline at end of file Added: branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.tnk =================================================================== --- branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.tnk (rev 0) +++ 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branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol =================================================================== --- branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol (rev 0) +++ branches/tutti-3.4.x/tutti-service/src/test/resources/pupitri/ano-5032.tuttiProtocol 2014-05-05 13:31:26 UTC (rev 1747) @@ -0,0 +1,81 @@ +id: c6ee2088-9720-46c0-b8d2-8f21c902676f +name: Protocole EVHOE 2013 +benthos: +comment: Protocole pour les tests 2013 avec Jean Jacques Rivoalen +gearUseFeaturePmfmId: +- 131 +- 828 +- 884 +- 965 +lengthClassesPmfmId: +- 306 +- 622 +- 307 +- 302 +- 299 +- 1394 +- 1417 +- 1425 +- 1426 +- 1427 +- 283 +- 284 +- 285 +- 294 +- 295 +- 300 +- 301 +- 304 +- 318 +- 319 +- 322 +- 323 +- 661 +- 662 +species: +- !SpeciesProtocol + id: 2a8122cf-d238-4820-a7b9-eacaf1f302bd + calcifySampleEnabled: true + countIfNoFrequencyEnabled: true + lengthStepPmfmId: 306 + mandatorySampleCategoryId: [] + speciesReferenceTaxonId: 1551 + speciesSurveyCode: MERLMNG + weightEnabled: true +- !SpeciesProtocol + id: 0de3f5c9-0ca9-4a7c-84aa-323d9eaa7f7f + countIfNoFrequencyEnabled: true + mandatorySampleCategoryId: [] + speciesReferenceTaxonId: 872 + speciesSurveyCode: ACAN-PEL + weightEnabled: true +- !SpeciesProtocol + id: ddffa4c9-cbb5-447f-a829-e2ac0cfea0f5 + countIfNoFrequencyEnabled: true + lengthStepPmfmId: 306 + mandatorySampleCategoryId: [] + speciesReferenceTaxonId: 1732 + speciesSurveyCode: ACANPAL + weightEnabled: true +vesselUseFeaturePmfmId: +- 173 +- 194 +- 230 +- 782 +- 843 +- 844 +- 846 +- 847 +- 848 +- 849 +- 850 +- 851 +- 857 +- 858 +- 859 +- 861 +- 862 +- 863 +- 881 +- 882 +- 883 \ No newline at end of file

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