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r2139 - in isis-fish/trunk/src/main/java/fr/ifremer/isisfish: . simulator/launcher
by chatellier＠users.labs.libre-entreprise.org 23 Apr '09

23 Apr '09

Author: chatellier Date: 2009-04-23 15:27:52 +0000 (Thu, 23 Apr 2009) New Revision: 2139 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/InProcessSimulatorLauncher.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/IsisFishServerSimulationLauncher.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulatorLauncher.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SubProcessSimulationLauncher.java Log: Comment previous commit. Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java 2009-04-23 14:08:36 UTC (rev 2138) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java 2009-04-23 15:27:52 UTC (rev 2139) @@ -364,10 +364,15 @@ } /** - * TODO comment + * Retourne le nombre simultané de simulations authorisées sur + * caparmor. + * + * Utilisé pour l'envoie des simulations. + * + * @return le nombre de simulations authorisé */ public int getSimulatorSshMaxSimulteaneousSimulation() { - int result = getOptionAsInt(Option.SIMULATOR_SSH_MAX_SIMULTEANEOUS_SIMULATION.key); + int result = getOptionAsInt(Option.SIMULATOR_SSH_MAX_SIMULTANEOUS_SIMULATION.key); return result; } @@ -661,7 +666,10 @@ }; - log.info("Check configuration change"); + if (log.isInfoEnabled()) { + log.info("Check configuration change"); + } + for(int i=0; i<keys.length;) { String oldKey = keys[i++]; String newKey = keys[i++]; @@ -679,7 +687,9 @@ } if (mustSave) { saveForUser(); - log.info("Config file migration done"); + if (log.isInfoEnabled()) { + log.info("Config file migration done"); + } } if (log.isDebugEnabled()) { printConfig(); @@ -736,7 +746,7 @@ /** Serveur accessible par SSH : interval de check du fichier de control */ SIMULATOR_SSH_CONTROLCHECKINTERVAL("simulation.ssh.control.check.interval", _("isisfish.config.main.simulation.ssh.control.check.interval.description"), "5"), /** Serveur accessible par SSH : nombre de simulations simultanées sur caparmor */ - SIMULATOR_SSH_MAX_SIMULTEANEOUS_SIMULATION("simulation.ssh.max.simultaneous.simulation", _("isisfish.config.main.simulation.max.simultaneous.simulation.description"), "20"), + SIMULATOR_SSH_MAX_SIMULTANEOUS_SIMULATION("simulation.ssh.max.simultaneous.simulation", _("isisfish.config.main.simulation.max.simultaneous.simulation.description"), "20"), LOCALE("locale", _("isisfish.config.main.locale.description"), "fr_FR"), // REGION_MAP("regionMap", _("isisfish.config.main.regionMap.description"), "maps"), Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/InProcessSimulatorLauncher.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/InProcessSimulatorLauncher.java 2009-04-23 14:08:36 UTC (rev 2138) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/InProcessSimulatorLauncher.java 2009-04-23 15:27:52 UTC (rev 2139) @@ -527,22 +527,24 @@ } } - /* - * @see fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher#simulationEnded() + /** + * {@inheritDoc} + * + * Do nothing (no restriction on inprocess launcher). */ @Override public void simulationEnded() { - // TODO Auto-generated method stub - + } - /* - * @see fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher#simulationStarted() + /** + * {@inheritDoc} + * + * Do nothing (no restriction on inprocess launcher). */ @Override public void simulationStarted() { - // TODO Auto-generated method stub - + } } Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/IsisFishServerSimulationLauncher.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/IsisFishServerSimulationLauncher.java 2009-04-23 14:08:36 UTC (rev 2138) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/IsisFishServerSimulationLauncher.java 2009-04-23 15:27:52 UTC (rev 2139) @@ -233,7 +233,6 @@ public SimulationStorage getSimulationStorage( SimulationService simulationService, SimulationControl control) throws RemoteException { - // TODO Auto-generated method stub return null; } @@ -243,25 +242,26 @@ @Override public void updateControl(SimulationService simulationService, SimulationControl control) throws RemoteException { - // TODO Auto-generated method stub } - /* - * @see fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher#simulationEnded() + /** + * {@inheritDoc} + * + * Do nothing (no restriction on xml rpc launcher). */ @Override public void simulationEnded() { - // TODO Auto-generated method stub - + } - /* - * @see fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher#simulationStarted() + /** + * {@inheritDoc} + * + * Do nothing (no restriction on xml rpc launcher). */ @Override public void simulationStarted() { - // TODO Auto-generated method stub - + } } Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java 2009-04-23 14:08:36 UTC (rev 2138) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java 2009-04-23 15:27:52 UTC (rev 2139) @@ -82,8 +82,6 @@ protected static final String QSUB_SCRIPT_TEMPLATE = "templates/ssh/launch-isis-qsub.seq"; //protected static final String QSUB_SCRIPT_TEMPLATE = "templates/ssh/launch-isis-cron.seq"; - protected static Semaphore semaphore = new Semaphore(IsisFish.config.getSimulatorSshMaxSimulteaneousSimulation()); - /** * Opened session. Stored in static context to not reask passphrase at each * connection. @@ -91,6 +89,12 @@ protected static Session sshSession; /** + * Semaphore used to upload only 20 (default) simulations at a time. + */ + protected static Semaphore semaphore = new Semaphore(IsisFish.config + .getSimulatorSshMaxSimulteaneousSimulation()); + + /** * Constructor. * * Init freemarker. @@ -99,29 +103,7 @@ initFreemarker(); } - /** - * @return the semaphore - */ - public static Semaphore getSemaphore() { - return semaphore; - } - - public void simulationStarted() { - try { - semaphore.acquire(); - } catch (InterruptedException e) { - if (log.isErrorEnabled()) { - log.error("Semaphore aquiere has been interrupted", e); - } - } - } - - public void simulationEnded() { - semaphore.release(); - } - - /** * Init freemarker configuration. */ protected void initFreemarker() { @@ -195,6 +177,34 @@ /** * {@inheritDoc} * + * Use semaphore to limit simultaneous simulation number on caparmor. + * + * @see Semaphore + */ + @Override + public void simulationStarted() { + try { + semaphore.acquire(); + } catch (InterruptedException e) { + if (log.isErrorEnabled()) { + log.error("Semaphore aquiere has been interrupted", e); + } + } + } + + /** + * {@inheritDoc} + * + * Release one resource onr semaphore. + */ + @Override + public void simulationEnded() { + semaphore.release(); + } + + /** + * {@inheritDoc} + * * Dans le cas de ssh: - upload la simulation - construit le script pour * qsub - upload le script qsub - ajoute le script a qsub * @@ -206,6 +216,7 @@ String simulationPrescript) throws RemoteException { // ask for available resources on caparmor + // bloquin until available simulationStarted(); // start ssh session @@ -243,7 +254,7 @@ /** * {@inheritDoc} * - * Se connecte au serveur distance et tétécharge les résultats de la + * Se connecte au serveur distant et télécharge les résultats de la * simulation. */ @Override @@ -273,7 +284,7 @@ /** * {@inheritDoc} * - * Se connecte au serveur distance et télécharge le fichier de control. + * Se connecte au serveur distant et télécharge le fichier de control. * Injecte ensuite ce fichier dans le {@link SimulationControl}. */ @Override @@ -455,8 +466,7 @@ * * Just connect and do an "echo xx >> .ssh/authorized_keys" * - * @param session - * opened session + * @param session opened session * @param sshKey * @throws JSchException */ @@ -469,8 +479,10 @@ // command to : // - make ssh directory // - add key to authorized_keys - String command = "if [ ! -d .ssh ] ; then mkdir .ssh; fi ; echo \"%s\" >> .ssh/authorized_keys"; + // tested on bash/csh + String command = "test -d .ssh||mkdir .ssh;echo \"%s\" >> .ssh/authorized_keys"; + try { // use usefull readLines from commons-io @SuppressWarnings("unchecked") @@ -491,16 +503,12 @@ } } catch (IOException e) { if (log.isErrorEnabled()) { - log - .error( - _("Error while uploading public key to remote serveur authorized_keys"), + log.error(_("Error while uploading public key to remote serveur authorized_keys"), e); } } catch (SSHException e) { if (log.isErrorEnabled()) { - log - .error( - _("Error while uploading public key to remote serveur authorized_keys"), + log.error(_("Error while uploading public key to remote serveur authorized_keys"), e); } } @@ -509,14 +517,11 @@ /** * Upload simulation file to server. * - * @param session - * already open valid ssh session - * @param simulationFile - * simulation file to upload + * @param session already open valid ssh session + * @param simulationFile simulation file to upload * * @return remote file path or <tt>null</tt> if errors - * @throws SSHException - * if upload fail + * @throws SSHException if upload fail */ protected String uploadSimulation(Session session, File simulationFile) throws SSHException { @@ -526,12 +531,10 @@ // first check that remote directory exists String remotePath = IsisFish.config.getSimulatorSshTmpPath(); - // FIXME This is a workaround to make the simulations work on caparmor - // FIXME We need to find a way to make it work the old way. - - String command = "test -d \"" + remotePath + "\"||mkdir \"" + remotePath + "\""; - //String command = "if ( ! -d \"" + remotePath + "\" ) mkdir \"" - // + remotePath + "\""; + // following command work on bash and csh + String command = "test -d \"" + remotePath + "\"||mkdir \"" + + remotePath + "\""; + if (log.isInfoEnabled()) { log.info("Creating remote temp directory (if not exists) " + remotePath); @@ -610,14 +613,11 @@ * Download remote simulation control file and store its content into temp * file. * - * @param simulationId - * id de la simulation - * @param fileName - * nom du fichier a telecharger + * @param simulationId id de la simulation + * @param fileName nom du fichier a telecharger * @return downloaded temp file (file have to be manually deleted) * @throws IOException - * @throws SSHException - * if remote file doesn't exists + * @throws SSHException if remote file doesn't exists */ protected File downloadSimulationFile(String simulationId, String fileName) throws IOException, SSHException { @@ -647,13 +647,10 @@ /** * Upload script on remote server. * - * @param session - * valid opened ssh session - * @param simulationScript - * file to upload + * @param session valid opened ssh session + * @param simulationScript file to upload * - * @throws SSHException - * if upload fail + * @throws SSHException if upload fail */ protected String uploadSimulationScript(Session session, File simulationScript) throws SSHException { @@ -687,15 +684,11 @@ * * Return path if uploaded or null if no upload needed. * - * @param session - * valid opened ssh session - * @param simulationPreScript - * script content + * @param session valid opened ssh session + * @param simulationPreScript script content * - * @throws SSHException - * if upload fail - * @throws IOException - * if upload fail + * @throws SSHException if upload fail + * @throws IOException if upload fail */ protected String uploadPreScriptIfNecessary(Session session, String simulationId, String simulationPreScript) @@ -739,17 +732,13 @@ * * Le fichier temporaire est configuré pour se supprimer tout seul. * - * @param simuationId - * id de la simulation - * @param simulationZip - * zip de la simulation - * @param preScriptPath - * simulation pre script path (can be null) + * @param simuationId id de la simulation + * @param simulationZip zip de la simulation + * @param preScriptPath simulation pre script path (can be null) * * @return un Fichier temporaire ou <tt>null</tt> en cas d'exception * - * @throws IOException - * if can't build script + * @throws IOException if can't build script */ protected File getSimulationScriptFile(String simuationId, String simulationZip, String preScriptPath) throws IOException { @@ -769,17 +758,12 @@ * * Remplace aussi la variable $simulation du template. * - * @param templateName - * url du template - * @param simuationId - * id de la simulation - * @param simulationZip - * zip de la simulation - * @param preScriptPath - * simulation pre script path (can be null) + * @param templateName url du template + * @param simuationId id de la simulation + * @param simulationZip zip de la simulation + * @param preScriptPath simulation pre script path (can be null) * - * @throws IOException - * if can't get script content + * @throws IOException if can't get script content */ protected String getSimulationScriptLaunchContent(String templateName, String simuationId, String simulationZip, String preScriptPath) @@ -825,13 +809,10 @@ /** * Add script in remote qsub queue. * - * @param session - * valid opened session - * @param scriptRemotePath - * remote script path + * @param session valid opened session + * @param scriptRemotePath remote script path * - * @throws SSHException - * if call fail + * @throws SSHException if call fail */ protected void addScriptToQsubQueue(Session session, String scriptRemotePath) throws SSHException { Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java 2009-04-23 14:08:36 UTC (rev 2138) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java 2009-04-23 15:27:52 UTC (rev 2139) @@ -453,7 +453,7 @@ SimulationService service = SimulationService.getService(); SimulationControl control = job.getItem().getControl(); - // TODO comment + // Release one available resource on launcher launcher.simulationEnded(); if (log.isInfoEnabled()) { Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulatorLauncher.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulatorLauncher.java 2009-04-23 14:08:36 UTC (rev 2138) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulatorLauncher.java 2009-04-23 15:27:52 UTC (rev 2139) @@ -107,7 +107,17 @@ SimulationControl control) throws RemoteException; + /** + * Call it before starting a simulation. + * + * This call is bloquing until available resources. + */ public void simulationStarted(); + /** + * Call it after simulation end. + * + * Release one resources. + */ public void simulationEnded(); } Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SubProcessSimulationLauncher.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SubProcessSimulationLauncher.java 2009-04-23 14:08:36 UTC (rev 2138) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SubProcessSimulationLauncher.java 2009-04-23 15:27:52 UTC (rev 2139) @@ -309,21 +309,23 @@ } - /* - * @see fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher#simulationEnded() + /** + * {@inheritDoc} + * + * Do nothing (no restriction on subprocess launcher). */ @Override public void simulationEnded() { - // TODO Auto-generated method stub - + } - /* - * @see fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher#simulationStarted() + /** + * {@inheritDoc} + * + * Do nothing (no restriction on subprocess launcher). */ @Override public void simulationStarted() { - // TODO Auto-generated method stub - + } }

1 0

r2138 - in isis-fish/trunk/src/main/java/fr/ifremer/isisfish: . simulator/launcher
by chatellier＠users.labs.libre-entreprise.org 23 Apr '09

23 Apr '09

Author: chatellier Date: 2009-04-23 14:08:36 +0000 (Thu, 23 Apr 2009) New Revision: 2138 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/InProcessSimulatorLauncher.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/IsisFishServerSimulationLauncher.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulatorLauncher.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SubProcessSimulationLauncher.java Log: Add semaphore to control simulteaneous thread on caparmor Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java 2009-04-22 17:03:14 UTC (rev 2137) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java 2009-04-23 14:08:36 UTC (rev 2138) @@ -362,6 +362,14 @@ int result = getOptionAsInt(Option.SIMULATOR_SSH_CONTROLCHECKINTERVAL.key); return result; } + + /** + * TODO comment + */ + public int getSimulatorSshMaxSimulteaneousSimulation() { + int result = getOptionAsInt(Option.SIMULATOR_SSH_MAX_SIMULTEANEOUS_SIMULATION.key); + return result; + } /** * Retourne la clé privée de l'utilisteur courant. @@ -727,6 +735,8 @@ SIMULATOR_SSH_ADDSCRIPTTOQUEUECOMMAND("simulation.ssh.addscripttoqueuecommand", _("isisfish.config.main.simulation.ssh.addscripttoqueuecommand.description"), "/usr/pbs/bin/qsub"), /** Serveur accessible par SSH : interval de check du fichier de control */ SIMULATOR_SSH_CONTROLCHECKINTERVAL("simulation.ssh.control.check.interval", _("isisfish.config.main.simulation.ssh.control.check.interval.description"), "5"), + /** Serveur accessible par SSH : nombre de simulations simultanées sur caparmor */ + SIMULATOR_SSH_MAX_SIMULTEANEOUS_SIMULATION("simulation.ssh.max.simultaneous.simulation", _("isisfish.config.main.simulation.max.simultaneous.simulation.description"), "20"), LOCALE("locale", _("isisfish.config.main.locale.description"), "fr_FR"), // REGION_MAP("regionMap", _("isisfish.config.main.regionMap.description"), "maps"), Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/InProcessSimulatorLauncher.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/InProcessSimulatorLauncher.java 2009-04-22 17:03:14 UTC (rev 2137) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/InProcessSimulatorLauncher.java 2009-04-23 14:08:36 UTC (rev 2138) @@ -527,4 +527,22 @@ } } + /* + * @see fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher#simulationEnded() + */ + @Override + public void simulationEnded() { + // TODO Auto-generated method stub + + } + + /* + * @see fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher#simulationStarted() + */ + @Override + public void simulationStarted() { + // TODO Auto-generated method stub + + } + } Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/IsisFishServerSimulationLauncher.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/IsisFishServerSimulationLauncher.java 2009-04-22 17:03:14 UTC (rev 2137) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/IsisFishServerSimulationLauncher.java 2009-04-23 14:08:36 UTC (rev 2138) @@ -246,4 +246,22 @@ // TODO Auto-generated method stub } + + /* + * @see fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher#simulationEnded() + */ + @Override + public void simulationEnded() { + // TODO Auto-generated method stub + + } + + /* + * @see fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher#simulationStarted() + */ + @Override + public void simulationStarted() { + // TODO Auto-generated method stub + + } } Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java 2009-04-22 17:03:14 UTC (rev 2137) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java 2009-04-23 14:08:36 UTC (rev 2138) @@ -30,6 +30,7 @@ import java.util.List; import java.util.Map; import java.util.Properties; +import java.util.concurrent.Semaphore; import org.apache.commons.io.FileUtils; import org.apache.commons.lang.StringUtils; @@ -81,6 +82,8 @@ protected static final String QSUB_SCRIPT_TEMPLATE = "templates/ssh/launch-isis-qsub.seq"; //protected static final String QSUB_SCRIPT_TEMPLATE = "templates/ssh/launch-isis-cron.seq"; + protected static Semaphore semaphore = new Semaphore(IsisFish.config.getSimulatorSshMaxSimulteaneousSimulation()); + /** * Opened session. Stored in static context to not reask passphrase at each * connection. @@ -96,7 +99,29 @@ initFreemarker(); } + /** + * @return the semaphore + */ + public static Semaphore getSemaphore() { + return semaphore; + } + + public void simulationStarted() { + try { + semaphore.acquire(); + } catch (InterruptedException e) { + if (log.isErrorEnabled()) { + log.error("Semaphore aquiere has been interrupted", e); + } + } + } + + public void simulationEnded() { + semaphore.release(); + } + + /** * Init freemarker configuration. */ protected void initFreemarker() { @@ -180,6 +205,9 @@ SimulationControl control, File simulationZip, String simulationPrescript) throws RemoteException { + // ask for available resources on caparmor + simulationStarted(); + // start ssh session try { // connection @@ -501,10 +529,9 @@ // FIXME This is a workaround to make the simulations work on caparmor // FIXME We need to find a way to make it work the old way. - //String command = "if [ ! -d \"" + remotePath + "\" ] ; then mkdir \"" - // + remotePath + "\"; fi"; - String command = "if ( ! -d \"" + remotePath + "\" ) mkdir \"" - + remotePath + "\""; + String command = "test -d \"" + remotePath + "\"||mkdir \"" + remotePath + "\""; + //String command = "if ( ! -d \"" + remotePath + "\" ) mkdir \"" + // + remotePath + "\""; if (log.isInfoEnabled()) { log.info("Creating remote temp directory (if not exists) " + remotePath); Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java 2009-04-22 17:03:14 UTC (rev 2137) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java 2009-04-23 14:08:36 UTC (rev 2138) @@ -453,6 +453,9 @@ SimulationService service = SimulationService.getService(); SimulationControl control = job.getItem().getControl(); + // TODO comment + launcher.simulationEnded(); + if (log.isInfoEnabled()) { log.info("Do post simulation operation for " + control.getId()); } Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulatorLauncher.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulatorLauncher.java 2009-04-22 17:03:14 UTC (rev 2137) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulatorLauncher.java 2009-04-23 14:08:36 UTC (rev 2138) @@ -105,4 +105,9 @@ */ public void updateControl(SimulationService simulationService, SimulationControl control) throws RemoteException; + + + public void simulationStarted(); + + public void simulationEnded(); } Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SubProcessSimulationLauncher.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SubProcessSimulationLauncher.java 2009-04-22 17:03:14 UTC (rev 2137) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SubProcessSimulationLauncher.java 2009-04-23 14:08:36 UTC (rev 2138) @@ -308,4 +308,22 @@ SimulationStorage.readControl(simulationId, control, "stop"); } + + /* + * @see fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher#simulationEnded() + */ + @Override + public void simulationEnded() { + // TODO Auto-generated method stub + + } + + /* + * @see fr.ifremer.isisfish.simulator.launcher.SimulatorLauncher#simulationStarted() + */ + @Override + public void simulationStarted() { + // TODO Auto-generated method stub + + } }

1 0

r2137 - in isis-fish/trunk/src/main: java/fr/ifremer/isisfish java/fr/ifremer/isisfish/datastore resources/i18n
by chatellier＠users.labs.libre-entreprise.org 22 Apr '09

22 Apr '09

Author: chatellier Date: 2009-04-22 17:03:14 +0000 (Wed, 22 Apr 2009) New Revision: 2137 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/IsisH2Config.java isis-fish/trunk/src/main/resources/i18n/isis-fish-en_GB.properties isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties Log: Add database lock mode parameter Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java 2009-04-22 10:30:56 UTC (rev 2136) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java 2009-04-22 17:03:14 UTC (rev 2137) @@ -155,6 +155,25 @@ File result = getOptionAsFile(Option.DATABASE_DIRECTORY.key); return result; } + + /** + * Retourne le lock a utiliser pour la base h2. + * + * Par defaut la base utilise 'file'. + * + * Les valeur acceptées sont : + * - file + * - socket + * - no + * + * http://www.h2database.com/html/features.html#database_file_locking + * + * @return h2 db lock mode + */ + public String getDatabaseLockMode() { + String result = getOption(Option.DATABASE_LOCK_MODE.key); + return result; + } /** * Retourne le repertoire ou sont stockes les scripts compiles. @@ -720,6 +739,8 @@ DATABASE_DIRECTORY("database.directory", _("isisfish.config.vcs.localDatabasePath.description"), getUserHome() + File.separator + "isis-database-3"), + DATABASE_LOCK_MODE("database.lockmode", _("isisfish.config.database.lockmode.description"), "file"), + // TODO remove duplicated ssh key configuration SSH_KEY_FILE("ssh.key.file", _("isisfish.config.vcs.keyFile.description"), getUserHome() + File.separator + ".ssh" + File.separator + "isis_rsa"), SSH_PASSPHRASE_ENABLED("ssh.passphrase.enabled", _("isisfish.config.vcs.noPassPhrase.description"), "false"), Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/IsisH2Config.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/IsisH2Config.java 2009-04-22 10:30:56 UTC (rev 2136) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/IsisH2Config.java 2009-04-22 17:03:14 UTC (rev 2137) @@ -17,6 +17,7 @@ package fr.ifremer.isisfish.datastore; import fr.ifremer.isisfish.IsisConfig; +import fr.ifremer.isisfish.IsisFish; import fr.ifremer.isisfish.IsisFishDAOHelper; import fr.ifremer.isisfish.datastore.migration.SwingMigrationCallbackHandler; import org.codelutin.topia.migration.TopiaMigrationServiceImpl; @@ -65,7 +66,7 @@ protected static final String H2_URL = "jdbc:h2:file:%s;" + // on peut aussi utiliser file, socket - "FILE_LOCK=file;" + + "FILE_LOCK=%s;" + //1 or 2 is needed to restore avec crash // 0: logging is disabled (faster), // 1: logging of the data is enabled, but logging of the index @@ -143,10 +144,10 @@ // pour h2 on remet STORAGE_DATA car il ne cree pas de repertoire String url; if (tryRecover) { - url = String.format(H2_RECOVER_URL, getStorageDataDirectory(databasePath).getPath()); + url = String.format(H2_RECOVER_URL, getStorageDataDirectory(databasePath).getPath(), IsisFish.config.getDatabaseLockMode()); } else { - url = String.format(H2_URL, getStorageDataDirectory(databasePath).getPath()); + url = String.format(H2_URL, getStorageDataDirectory(databasePath).getPath(), IsisFish.config.getDatabaseLockMode()); } config.setProperty(Environment.URL, url); Modified: isis-fish/trunk/src/main/resources/i18n/isis-fish-en_GB.properties =================================================================== --- isis-fish/trunk/src/main/resources/i18n/isis-fish-en_GB.properties 2009-04-22 10:30:56 UTC (rev 2136) +++ isis-fish/trunk/src/main/resources/i18n/isis-fish-en_GB.properties 2009-04-22 17:03:14 UTC (rev 2137) @@ -144,6 +144,7 @@ isisfish.common.warn=warn isisfish.common.year=annee isisfish.common.zone=zone +isisfish.config.database.lockmode.description= isisfish.config.main.compileDirectory.description= isisfish.config.main.configFileName.description= isisfish.config.main.defaultBackupDirectory.description= Modified: isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties =================================================================== --- isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties 2009-04-22 10:30:56 UTC (rev 2136) +++ isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties 2009-04-22 17:03:14 UTC (rev 2137) @@ -144,6 +144,7 @@ isisfish.common.warn=Warning isisfish.common.year=ann\u00E9e isisfish.common.zone=Zone +isisfish.config.database.lockmode.description= isisfish.config.main.compileDirectory.description=le r\u00E9pertoire o\u00F9 sont compil\u00E9s les scripts isisfish.config.main.configFileName.description=le fichier de configuration \u00E0 utiliser isisfish.config.main.defaultBackupDirectory.description=le r\u00E9pertoire o\u00F9 stocker les backups des donn\u00E9es

1 0

r2136 - in isis-fish/trunk/src/main/java/fr/ifremer/isisfish: datastore ui/sensitivity ui/simulator
by chatellier＠users.labs.libre-entreprise.org 22 Apr '09

22 Apr '09

Author: chatellier Date: 2009-04-22 10:30:56 +0000 (Wed, 22 Apr 2009) New Revision: 2136 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/SensitivityStorage.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityChooserUI.jaxx isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityUI.jaxx isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java Log: Reload sensivity calculator when reloading simulation. Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/SensitivityStorage.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/SensitivityStorage.java 2009-04-22 09:38:44 UTC (rev 2135) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/datastore/SensitivityStorage.java 2009-04-22 10:30:56 UTC (rev 2136) @@ -96,13 +96,13 @@ } /** - * Retourne le nom de tous les calculateurs de sensibilité existans. + * Retourne le nom de tous les calculateurs de sensibilité existant. * * @return le nom de tous les calculateurs de sensibilité existans en local */ public static List<String> getSensitivityNames() { File dir = getSensitivityDirectory(); - return SensitivityStorage.getStorageNames(dir); + return getStorageNames(dir); } /** Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityChooserUI.jaxx =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityChooserUI.jaxx 2009-04-22 09:38:44 UTC (rev 2135) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityChooserUI.jaxx 2009-04-22 10:30:56 UTC (rev 2136) @@ -59,14 +59,21 @@ public void refreshSelectedSensitivityCalculator() { SensitivityCalculator calculator = getSimulAction().getSensitivityCalculator(); if (calculator != null) { + if (log.isDebugEnabled()) { + log.debug("Refreshing calculator list"); + } // TODO it's not getSimpleName() here ! - String name = calculator.getClass().getSimpleName(); - fieldSensitivityCalculatorSelect.setSelectedItem( - new Item(name, name, name, false)); + fieldSensitivityCalculatorSelect.setSelectedItem(calculator.getClass().getSimpleName()); } } protected void sensCalculatorChanged() { + + // TODO change combo box content + // when calculator is changed by refreshSelectedSensitivityCalculator + // this event is thrown by build a new Calculator instance + // and parameter are lost + if (fieldSensitivityCalculatorSelect.getSelectedIndex() != -1) { String sensitivityName = (String)fieldSensitivityCalculatorSelect.getSelectedItem(); getSimulAction().setSensitivity(sensitivityName); Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityUI.jaxx =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityUI.jaxx 2009-04-22 09:38:44 UTC (rev 2135) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityUI.jaxx 2009-04-22 10:30:56 UTC (rev 2136) @@ -43,7 +43,7 @@ <SensitivityTabUI id="sensitivityTabUI" constructorParams='new JAXXInitialContext().add(new InputAction()).add(new InputSaveVerifier()).add(this)'/> </tab> <tab title='isisfish.sensitivityChooser.title'> - <SensitivityChooserUI id="sensitivityChooserUI" constructorParams='new JAXXInitialContext().add(this)'/> + <SensitivityChooserUI id="sensitivityChooserUI" constructorParams='this'/> </tab> <tab id="exportUITab" title='isisfish.export.title'> <ExportUI id="exportUI" constructorParams='getContextValue(SimulAction.class)'/> Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java 2009-04-22 09:38:44 UTC (rev 2135) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java 2009-04-22 10:30:56 UTC (rev 2136) @@ -354,9 +354,17 @@ } } + /** + * Return rules name without .java extention. + * + * @return rule names list + */ public List<String> getRuleNames() { List<String> result = new ArrayList<String>(); for (String r : RuleStorage.getRuleNames()) { + // Remove .java extention + // TODO find a better way to to that + // for example RuleStorage.getRuleName(String) result.add(r.substring(0, r.length() - 5)); } return result; @@ -812,8 +820,20 @@ return result; } + /** + * Return sensitivity calculator name without .java extention + * + * @return sensitivity calculator names list + */ public List<String> getSensitivityNames() { - return SensitivityStorage.getSensitivityNames(); + List<String> result = new ArrayList<String>(); + for (String r : SensitivityStorage.getSensitivityNames()) { + // Remove .java extention + // TODO find a better way to to that + // for example SensitivityStorage.getRuleName(String) + result.add(r.substring(0, r.length() - 5)); + } + return result; } public Map<String, Class<?>> getSensitivityParameterNames(String name) {

1 0

r2135 - in isis-fish/trunk/src/main: java/fr/ifremer/isisfish/ui/input resources/i18n
by chatellier＠users.labs.libre-entreprise.org 22 Apr '09

22 Apr '09

Author: chatellier Date: 2009-04-22 09:38:44 +0000 (Wed, 22 Apr 2009) New Revision: 2135 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/input/PopulationRecruitmentUI.jaxx isis-fish/trunk/src/main/resources/i18n/isis-fish-en_GB.properties isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties Log: Improve i18n Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/input/PopulationRecruitmentUI.jaxx =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/input/PopulationRecruitmentUI.jaxx 2009-04-22 08:44:10 UTC (rev 2134) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/input/PopulationRecruitmentUI.jaxx 2009-04-22 09:38:44 UTC (rev 2135) @@ -1,7 +1,6 @@  <fr.ifremer.isisfish.ui.input.InputContentUI> @@ -102,7 +89,7 @@ </row> <row> <cell anchor='east'> - <JLabel text="Month Gap BetweenRepro Recruitment" enabled='{isActif()}'/> + <JLabel text="isisfish.populationRecruitment.monthgapgetweenreprorecruitment" enabled='{isActif()}'/> </cell> <cell fill='horizontal' weightx='1.0'> <JTextField id="fieldPopulationMonthGapBetweenReproRecrutement" text='{getBean().getMonthGapBetweenReproRecrutement()}' onKeyReleased='getBean().setMonthGapBetweenReproRecrutement(Integer.parseInt(fieldPopulationMonthGapBetweenReproRecrutement.getText()))' enabled='{isActif()}' decorator='boxed' _bean='{PopulationImpl.class}' _method='"MonthGapBetweenReproRecrutement"'/> Modified: isis-fish/trunk/src/main/resources/i18n/isis-fish-en_GB.properties =================================================================== --- isis-fish/trunk/src/main/resources/i18n/isis-fish-en_GB.properties 2009-04-22 08:44:10 UTC (rev 2134) +++ isis-fish/trunk/src/main/resources/i18n/isis-fish-en_GB.properties 2009-04-22 09:38:44 UTC (rev 2135) @@ -40,7 +40,6 @@ Local\ repository\ don't\ exist= Local\ repository\ exists\ but\ it's\ not\ valide\ for\ current\ vcs\:\ %s= Master\ plan= -Month\ Gap\ BetweenRepro\ Recruitment= Normal\ stop\ thread,\ this\ is\ not\ an\ error= Not\ start\ simulation\ %s\ because\ user\ ask\ stop= Paste\ current\ selection\ (Ctrl-v)= @@ -499,6 +498,7 @@ isisfish.input.tree.cells=Cells isisfish.input.tree.gears=Gears isisfish.input.tree.metiers=Metiers +isisfish.input.tree.populations=Populations isisfish.input.tree.ports=Ports isisfish.input.tree.setofvessels=Set of vessels isisfish.input.tree.species=Species @@ -719,6 +719,7 @@ isisfish.populationMigrationMigration.departureZone=Departure Zone isisfish.populationMigrationMigration.title=Population migration isisfish.populationRecruitment.comments=Comments +isisfish.populationRecruitment.monthgapgetweenreprorecruitment=Month gap between repro and recruitment isisfish.populationRecruitment.recruitmentDistribution=Recruitment Distribution isisfish.populationRecruitment.reproductionEquation=ReproductionEquation isisfish.populationRecruitment.title=inputPopulationRecruitment Modified: isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties =================================================================== --- isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties 2009-04-22 08:44:10 UTC (rev 2134) +++ isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties 2009-04-22 09:38:44 UTC (rev 2135) @@ -40,7 +40,6 @@ Local\ repository\ don't\ exist= Local\ repository\ exists\ but\ it's\ not\ valide\ for\ current\ vcs\:\ %s= Master\ plan= -Month\ Gap\ BetweenRepro\ Recruitment=Nombre de mois entre ponte et recrutement Normal\ stop\ thread,\ this\ is\ not\ an\ error= Not\ start\ simulation\ %s\ because\ user\ ask\ stop= Paste\ current\ selection\ (Ctrl-v)= @@ -499,6 +498,7 @@ isisfish.input.tree.cells=Mailles isisfish.input.tree.gears=Engins isisfish.input.tree.metiers=M\u00E9tiers +isisfish.input.tree.populations=Populations isisfish.input.tree.ports=Ports isisfish.input.tree.setofvessels=Flottilles isisfish.input.tree.species=Esp\u00E8ces @@ -719,6 +719,7 @@ isisfish.populationMigrationMigration.departureZone=Zone de d\u00E9part isisfish.populationMigrationMigration.title=Migration de population isisfish.populationRecruitment.comments=Commentaires +isisfish.populationRecruitment.monthgapgetweenreprorecruitment=Nombre de mois entre ponte et recrutement isisfish.populationRecruitment.recruitmentDistribution=Distribution du recrutement isisfish.populationRecruitment.reproductionEquation=Equation de reproduction isisfish.populationRecruitment.title=Saisie des reproductions

1 0

r2134 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher
by jcouteau＠users.labs.libre-entreprise.org 22 Apr '09

22 Apr '09

Author: jcouteau Date: 2009-04-22 08:44:10 +0000 (Wed, 22 Apr 2009) New Revision: 2134 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java Log: Temporary bug fix on caparmor simulations Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java 2009-04-21 12:55:06 UTC (rev 2133) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java 2009-04-22 08:44:10 UTC (rev 2134) @@ -58,18 +58,16 @@ /** * Use a remote simulation server. * - * Upload zip simulation file on server and launch - * simulation on that file. + * Upload zip simulation file on server and launch simulation on that file. * * Isis-Fish must be installed on remote server. - * + * * @see JSch * * @author chatellier * @version $Revision: 1.0 $ * - * Last update : $Date: 18 nov. 2008 $ - * By : $Author: chatellier $ + * Last update : $Date: 18 nov. 2008 $ By : $Author: chatellier $ */ public class SSHSimulatorLauncher implements SimulatorLauncher { @@ -78,15 +76,14 @@ /** Freemarker configuration */ protected Configuration freemarkerConfiguration; - + /** Freemarker qsub template. */ protected static final String QSUB_SCRIPT_TEMPLATE = "templates/ssh/launch-isis-qsub.seq"; //protected static final String QSUB_SCRIPT_TEMPLATE = "templates/ssh/launch-isis-cron.seq"; - + /** - * Opened session. - * Stored in static context to not reask passphrase - * at each connection. + * Opened session. Stored in static context to not reask passphrase at each + * connection. */ protected static Session sshSession; @@ -121,8 +118,10 @@ /** * Display message both in commons-logging and control text progress. * - * @param control control - * @param message message to display + * @param control + * control + * @param message + * message to display */ protected void message(SimulationControl control, String message) { // log @@ -171,19 +170,15 @@ /** * {@inheritDoc} * - * Dans le cas de ssh: - * - upload la simulation - * - construit le script pour qsub - * - upload le script qsub - * - ajoute le script a qsub + * Dans le cas de ssh: - upload la simulation - construit le script pour + * qsub - upload le script qsub - ajoute le script a qsub * - * Et : - * - lance le thread de control de la simulation + * Et : - lance le thread de control de la simulation */ @Override public void simulate(SimulationService simulationService, - SimulationControl control, File simulationZip, String simulationPrescript) - throws RemoteException { + SimulationControl control, File simulationZip, + String simulationPrescript) throws RemoteException { // start ssh session try { @@ -199,13 +194,13 @@ // build du contenu du script message(control, _("isisfish.simulation.remote.message.waitingstart")); - String simulationPreScriptPath = uploadPreScriptIfNecessary(sshSession, - control.getId(), simulationPrescript); + String simulationPreScriptPath = uploadPreScriptIfNecessary( + sshSession, control.getId(), simulationPrescript); File simulationScript = getSimulationScriptFile(control.getId(), simulationRemotePath, simulationPreScriptPath); String scriptRemotePath = uploadSimulationScript(sshSession, simulationScript); - + addScriptToQsubQueue(sshSession, scriptRemotePath); } catch (Exception e) { @@ -220,7 +215,8 @@ /** * {@inheritDoc} * - * Se connecte au serveur distance et tétécharge les résultats de la simulation. + * Se connecte au serveur distance et tétécharge les résultats de la + * simulation. */ @Override public SimulationStorage getSimulationStorage( @@ -249,8 +245,7 @@ /** * {@inheritDoc} * - * Se connecte au serveur distance et télécharge le - * fichier de control. + * Se connecte au serveur distance et télécharge le fichier de control. * Injecte ensuite ce fichier dans le {@link SimulationControl}. */ @Override @@ -260,12 +255,13 @@ try { try { // download control file - File controlFile = downloadSimulationFile(control.getId(), SimulationStorage.CONTROL_FILENAME); + File controlFile = downloadSimulationFile(control.getId(), + SimulationStorage.CONTROL_FILENAME); if (log.isDebugEnabled()) { log.debug("Control have been downloaded : " + controlFile.getAbsolutePath()); } - + synchronized (control) { // le thread principal a pu le modifier pendant le sleep //if (control.isRunning()) { @@ -274,7 +270,7 @@ SimulationStorage.readControl(controlFile, control, "stop"); //} } - + // deleteTempFile controlFile.delete(); } catch (SSHException e) { @@ -285,10 +281,11 @@ .getMessage())); } } - + try { // download information file - File infoFile = downloadSimulationFile(control.getId(), SimulationStorage.INFORMATION_FILENAME); + File infoFile = downloadSimulationFile(control.getId(), + SimulationStorage.INFORMATION_FILENAME); if (log.isDebugEnabled()) { log.debug("Information have been downloaded : " + infoFile.getAbsolutePath()); @@ -299,13 +296,13 @@ // d'arret pour qu'elle s'arrete dans l'UI Properties infoProperties = new Properties(); infoProperties.load(new FileInputStream(infoFile)); - if (!StringUtils.isEmpty(infoProperties.getProperty("exception"))) { + if (!StringUtils.isEmpty(infoProperties + .getProperty("exception"))) { synchronized (control) { control.setStopSimulationRequest(true); } } - - + // deleteTempFile infoFile.delete(); } catch (SSHException e) { @@ -330,7 +327,7 @@ * This method must synchronized. * * @return opened ssh session. - * @throws JSchException + * @throws JSchException */ protected synchronized Session getSSHSession() throws JSchException { @@ -397,8 +394,7 @@ try { passphrase = SSHAgent.getAgent().getPassphrase(sshKey); ui.setPassphrase(passphrase); - } - catch(InvalidPassphraseException e) { + } catch (InvalidPassphraseException e) { if (log.isWarnEnabled()) { log.warn("Can't key passphrase for key", e); } @@ -417,7 +413,8 @@ /** * Close ssh session. * - * @param session session to close + * @param session + * session to close */ protected void closeSSHSession(Session session) { if (session != null) { @@ -429,9 +426,11 @@ * Add ssh key into $HOME/.ssh/authorized_keys file. * * Just connect and do an "echo xx >> .ssh/authorized_keys" - * @param session opened session + * + * @param session + * opened session * @param sshKey - * @throws JSchException + * @throws JSchException */ protected void putSshKeyOnRemoteServer(Session session, File sshKey) throws JSchException { @@ -464,12 +463,16 @@ } } catch (IOException e) { if (log.isErrorEnabled()) { - log.error(_("Error while uploading public key to remote serveur authorized_keys"), + log + .error( + _("Error while uploading public key to remote serveur authorized_keys"), e); } } catch (SSHException e) { if (log.isErrorEnabled()) { - log.error(_("Error while uploading public key to remote serveur authorized_keys"), + log + .error( + _("Error while uploading public key to remote serveur authorized_keys"), e); } } @@ -478,11 +481,14 @@ /** * Upload simulation file to server. * - * @param session already open valid ssh session - * @param simulationFile simulation file to upload + * @param session + * already open valid ssh session + * @param simulationFile + * simulation file to upload * * @return remote file path or <tt>null</tt> if errors - * @throws SSHException if upload fail + * @throws SSHException + * if upload fail */ protected String uploadSimulation(Session session, File simulationFile) throws SSHException { @@ -491,9 +497,14 @@ // first check that remote directory exists String remotePath = IsisFish.config.getSimulatorSshTmpPath(); + + // FIXME This is a workaround to make the simulations work on caparmor + // FIXME We need to find a way to make it work the old way. - String command = "if [ ! -d \"" + remotePath + "\" ] ; then mkdir \"" - + remotePath + "\"; fi"; + //String command = "if [ ! -d \"" + remotePath + "\" ] ; then mkdir \"" + // + remotePath + "\"; fi"; + String command = "if ( ! -d \"" + remotePath + "\" ) mkdir \"" + + remotePath + "\""; if (log.isInfoEnabled()) { log.info("Creating remote temp directory (if not exists) " + remotePath); @@ -511,7 +522,7 @@ if (!remotePath.endsWith("/")) { remotePath += "/"; } - + if (localPath.lastIndexOf("/") > 0) { remotePath += localPath.substring(localPath.lastIndexOf("/") + 1); } else if (localPath.lastIndexOf("\\") > 0) { // windows @@ -530,7 +541,8 @@ * * Simulation result is save in {@link SimulationStorage#SIMULATION_PATH}. * - * @throws SSHException if download fail (can happen if remote file doesn't exist + * @throws SSHException + * if download fail (can happen if remote file doesn't exist */ protected void downloadResults(Session session, String simulationId) throws SSHException { @@ -542,43 +554,46 @@ if (log.isDebugEnabled()) { log.debug("Downloading results in " + localFile.getAbsolutePath()); } - + // Cant happen if result have already been downloded // Or try to, but has been interrupted // delete and download again File simulationBaseDirectory = new File(localFile, simulationId); if (simulationBaseDirectory.exists()) { if (log.isWarnEnabled()) { - log.warn("Warning, simulation results " + simulationBaseDirectory.getAbsolutePath() + " already exists"); + log.warn("Warning, simulation results " + + simulationBaseDirectory.getAbsolutePath() + + " already exists"); log.warn("Delete it, and download again"); } - + FileUtil.deleteRecursively(simulationBaseDirectory); } - + // build remote file path // FIXME this path should be given by remote IsisFish app String remoteFile = IsisFish.config.getSimulatorSshDataPath(); remoteFile += "/" + SimulationStorage.SIMULATION_PATH; remoteFile += "/" + simulationId; - - SSHUtils.scpFrom(session, remoteFile, localFile); } /** - * Download remote simulation control file and store - * its content into temp file. + * Download remote simulation control file and store its content into temp + * file. * - * @param simulationId id de la simulation - * @param fileName nom du fichier a telecharger + * @param simulationId + * id de la simulation + * @param fileName + * nom du fichier a telecharger * @return downloaded temp file (file have to be manually deleted) - * @throws IOException - * @throws SSHException if remote file doesn't exists + * @throws IOException + * @throws SSHException + * if remote file doesn't exists */ - protected File downloadSimulationFile(String simulationId, String fileName) throws IOException, - SSHException { + protected File downloadSimulationFile(String simulationId, String fileName) + throws IOException, SSHException { File localFile = null; @@ -605,10 +620,13 @@ /** * Upload script on remote server. * - * @param session valid opened ssh session - * @param simulationScript file to upload + * @param session + * valid opened ssh session + * @param simulationScript + * file to upload * - * @throws SSHException if upload fail + * @throws SSHException + * if upload fail */ protected String uploadSimulationScript(Session session, File simulationScript) throws SSHException { @@ -623,7 +641,7 @@ if (!remotePath.endsWith("/")) { remotePath += "/"; } - + if (localPath.lastIndexOf("/") > 0) { remotePath += localPath.substring(localPath.lastIndexOf("/") + 1); } else if (localPath.lastIndexOf("\\") > 0) { // windows @@ -636,27 +654,33 @@ return remotePath; } - + /** * Upload pre script on remote server. * * Return path if uploaded or null if no upload needed. * - * @param session valid opened ssh session - * @param simulationPreScript script content + * @param session + * valid opened ssh session + * @param simulationPreScript + * script content * - * @throws SSHException if upload fail - * @throws IOException if upload fail + * @throws SSHException + * if upload fail + * @throws IOException + * if upload fail */ protected String uploadPreScriptIfNecessary(Session session, - String simulationId, String simulationPreScript) throws SSHException, IOException { + String simulationId, String simulationPreScript) + throws SSHException, IOException { // if there is no pre script, do nothings if (StringUtils.isEmpty(simulationPreScript)) { return null; } - - File tempPreScriptFile = File.createTempFile("isis-" + simulationId + "-", ".prescript"); + + File tempPreScriptFile = File.createTempFile("isis-" + simulationId + + "-", ".prescript"); FileUtil.writeString(tempPreScriptFile, simulationPreScript); String localPath = tempPreScriptFile.getAbsolutePath(); @@ -668,7 +692,7 @@ if (!remotePath.endsWith("/")) { remotePath += "/"; } - + if (localPath.lastIndexOf("/") > 0) { remotePath += localPath.substring(localPath.lastIndexOf("/") + 1); } else if (localPath.lastIndexOf("\\") > 0) { // windows @@ -683,18 +707,22 @@ } /** - * Retourne un fichier temporaire contenant le script de lancement - * de simulation. + * Retourne un fichier temporaire contenant le script de lancement de + * simulation. * * Le fichier temporaire est configuré pour se supprimer tout seul. * - * @param simuationId id de la simulation - * @param simulationZip zip de la simulation - * @param preScriptPath simulation pre script path (can be null) + * @param simuationId + * id de la simulation + * @param simulationZip + * zip de la simulation + * @param preScriptPath + * simulation pre script path (can be null) * * @return un Fichier temporaire ou <tt>null</tt> en cas d'exception * - * @throws IOException if can't build script + * @throws IOException + * if can't build script */ protected File getSimulationScriptFile(String simuationId, String simulationZip, String preScriptPath) throws IOException { @@ -710,20 +738,25 @@ } /** - * Utilise freemarker pour recuperer le contenu - * du script. + * Utilise freemarker pour recuperer le contenu du script. * * Remplace aussi la variable $simulation du template. * - * @param templateName url du template - * @param simuationId id de la simulation - * @param simulationZip zip de la simulation - * @param preScriptPath simulation pre script path (can be null) + * @param templateName + * url du template + * @param simuationId + * id de la simulation + * @param simulationZip + * zip de la simulation + * @param preScriptPath + * simulation pre script path (can be null) * - * @throws IOException if can't get script content + * @throws IOException + * if can't get script content */ protected String getSimulationScriptLaunchContent(String templateName, - String simuationId, String simulationZip, String preScriptPath) throws IOException { + String simuationId, String simulationZip, String preScriptPath) + throws IOException { String scriptContent = null; @@ -732,7 +765,7 @@ if (localPreScript == null) { localPreScript = ""; } - + try { // get template Template template = freemarkerConfiguration @@ -765,10 +798,13 @@ /** * Add script in remote qsub queue. * - * @param session valid opened session - * @param scriptRemotePath remote script path + * @param session + * valid opened session + * @param scriptRemotePath + * remote script path * - * @throws SSHException if call fail + * @throws SSHException + * if call fail */ protected void addScriptToQsubQueue(Session session, String scriptRemotePath) throws SSHException {

1 0

r2133 - in isis-fish/trunk/src: main/java/fr/ifremer/isisfish/simulator main/java/fr/ifremer/isisfish/ui/sensitivity main/java/fr/ifremer/isisfish/ui/simulator test/java/fr/ifremer/isisfish/simulator/launcher
by chatellier＠users.labs.libre-entreprise.org 21 Apr '09

21 Apr '09

Author: chatellier Date: 2009-04-21 12:55:06 +0000 (Tue, 21 Apr 2009) New Revision: 2133 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityChooserUI.jaxx isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/ParamsUI.jaxx isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SimulationServiceTest.java Log: Rechargement des exports et calculateur des simulations Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java 2009-04-21 12:54:14 UTC (rev 2132) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/SimulationParameter.java 2009-04-21 12:55:06 UTC (rev 2133) @@ -293,7 +293,12 @@ if (getSensitivityCalculator() != null) { String calculatorName = SensitivityStorage.getName(getSensitivityCalculator()); result.setProperty("sensitivitycalculator", calculatorName); + + // calculator parameter + Properties calculatorParams = sensitivityCalculatorParametertoProperties(0, getSensitivityCalculator()); + result.putAll(calculatorParams); } + // number of sensitivity simulation String sensitivityExportList = ""; // WARN only SENSITIVITY are parametrable for now @@ -459,6 +464,8 @@ if (!StringUtils.isEmpty(sensitivityCalculator)) { try { SensitivityCalculator calculator = SensitivityStorage.getSensitivity(sensitivityCalculator).getNewSensitivityInstance(); + // 0 = only single sensitivity + populateSensitivityCalculator(0, calculator, props); setSensitivityCalculator(calculator); } catch (IsisFishException eee) { if (log.isWarnEnabled()) { @@ -590,8 +597,7 @@ * @param exportIndex l'index de l'export * @param export L'export dont on souhaite mettre les parametres dans l'objet * Properties retourne - * @return L'objet Properties contenant les valeurs des parametres de la - * regle + * @return L'objet Properties contenant les valeurs des parametres de l'export */ protected Properties exportParametertoProperties(int exportIndex, Export export) { Properties result = new Properties(); @@ -615,7 +621,39 @@ return result; } + + /** + * Permet de mettre les parametres du calculateur sous une forme String pour + * pouvoir les relire ensuite. + * + * @param sensitivityIndex l'index du calculateur de sensitivity + * @param calculator Le calculateurdont on souhaite mettre les parametres dans l'objet + * Properties retourne + * @return L'objet Properties contenant les valeurs des parametres du calculateur de sensibilité + */ + protected Properties sensitivityCalculatorParametertoProperties(int sensitivityIndex, SensitivityCalculator calculator) { + Properties result = new Properties(); + ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion().getStorage()); + for (String paramName : SensitivityStorage.getParameterNames(calculator).keySet()) { + String paramValueString; + try { + Object value = SensitivityStorage.getParameterValue(calculator, paramName); + paramValueString = beanUtils.convert(value); + if (paramValueString != null) { + result.setProperty("sensitivity." + sensitivityIndex + ".parameter." + + paramName, paramValueString); + } + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't convert parameter value to String: " + + paramName, eee); + } + } + } + return result; + } + /** * Permet de mettre les parametres du plan sous une forme String pour * pouvoir les relire ensuite. @@ -649,8 +687,8 @@ } /** - * Recupere dans prop les valeurs des champs specifique a le plan et met a - * jour les champs du plan + * Recupere dans prop les valeurs des champs specifique au plan et met a + * jour les champs du plan. * * @param planIndex l'index du plan * @param plan le plan dont les parametres doivent etre lu depuis les @@ -679,7 +717,39 @@ } } } + + /** + * Recupere dans prop les valeurs des champs specifique au calculateur de sensibilité et met a + * jour les champs du calculateur. + * + * @param calculatorIndex l'index du calculateur + * @param calculator le calculateur dont les parametres doivent etre lu depuis les + * proprietes + * @param props les proprietes contenant les parametre du calculateur + */ + protected void populateSensitivityCalculator(int calculatorIndex, SensitivityCalculator calculator, Properties props) { + ConvertUtilsBean beanUtils = ConverterUtil.getConverter(getRegion().getStorage()); + String calculatorName = SensitivityStorage.getName(calculator); + String paramTag = "sensitivity." + calculatorIndex + ".parameter."; + for (Map.Entry<String, Class<?>> entry : SensitivityStorage.getParameterNames(calculator).entrySet()) { + String propName = entry.getKey(); + Class<?> type = entry.getValue(); + if (TopiaEntity.class.isAssignableFrom(type)) { + type = TopiaEntity.class; + } + String valueString = props.getProperty(paramTag + propName); + Object value = beanUtils.convert(valueString, type); + try { + SensitivityStorage.setParameterValue(calculator, propName, value); + } catch (IsisFishException eee) { + if (log.isWarnEnabled()) { + log.warn("Can't reload field " + propName + " for sensitivity calculator " + calculatorName , eee); + } + } + } + } + /** * @return Returns the extraRules. */ Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityChooserUI.jaxx =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityChooserUI.jaxx 2009-04-21 12:54:14 UTC (rev 2132) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityChooserUI.jaxx 2009-04-21 12:55:06 UTC (rev 2133) @@ -15,18 +15,7 @@ * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. - *##%*/ - -/* * - * SensitivityChooserUI. - * - * @author letellier - * @version $Revision$ - * - * Last update: $Date$ - * by : $Author$ - */ - --> + *##%*/ --> <Table> <script><![CDATA[ import javax.swing.table.DefaultTableModel; @@ -63,6 +52,20 @@ return fieldSensitivityCalculatorSelect.getModel(); } + /** + * Auto select calculator in JComboBox + * with calculator selected in SimulAction. + */ + public void refreshSelectedSensitivityCalculator() { + SensitivityCalculator calculator = getSimulAction().getSensitivityCalculator(); + if (calculator != null) { + // TODO it's not getSimpleName() here ! + String name = calculator.getClass().getSimpleName(); + fieldSensitivityCalculatorSelect.setSelectedItem( + new Item(name, name, name, false)); + } + } + protected void sensCalculatorChanged() { if (fieldSensitivityCalculatorSelect.getSelectedIndex() != -1) { String sensitivityName = (String)fieldSensitivityCalculatorSelect.getSelectedItem(); Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/ParamsUI.jaxx =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/ParamsUI.jaxx 2009-04-21 12:54:14 UTC (rev 2132) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/ParamsUI.jaxx 2009-04-21 12:55:06 UTC (rev 2133) @@ -135,8 +135,9 @@ getParentContainer(SensitivityUI.class).getSensitivityChooserUI().setExportListModel(); } } -protected void setSensibilities() { +protected void setSensitivityCalculator() { if (isSensitivity()){ + getParentContainer(SensitivityUI.class).getSensitivityChooserUI().refreshSelectedSensitivityCalculator(); } } public void setSimulationParameter(SimulAction simulAction){ @@ -154,12 +155,11 @@ refresh(); setFactorRegion(); setExportSens(); - setSensibilities(); + setSensitivityCalculator(); setFactor(); getParentContainer(WelcomePanelUI.class).setInfoText(_("isisfish.message.old.simulation.loaded")); } }); - } } protected void addRules(){ @@ -201,7 +201,7 @@ if (fieldSimulOnlyExport.isSelected()){ getContextValue(SimulAction.class).getSimulationParameter().setOnlyExport(true); } - else{ + else { getContextValue(SimulAction.class).getSimulationParameter().setOnlyExport(false); } } Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java 2009-04-21 12:54:14 UTC (rev 2132) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java 2009-04-21 12:55:06 UTC (rev 2133) @@ -307,7 +307,7 @@ // Chargement des facteurs File f = simulStorage.getMexicoDesignPlan(SimulationStorage.getSimulationDirectory(simulName)); - if (f != null){ + if (f != null && f.canRead()) { if (log.isDebugEnabled()) { log.debug("Import design plan from : " + f.getPath()); } @@ -320,6 +320,11 @@ factors.put(factor.getPath() + factor.getName(), factor); } } + else { + if (log.isInfoEnabled()) { + log.info("No xml design plan file found"); + } + } } catch (Exception eee) { if (log.isErrorEnabled()) { log.error("Can't load old Simulation: " + simulName, eee); @@ -853,8 +858,12 @@ } } - public SensitivityStorage getSensitivity(String name) { - return SensitivityStorage.getSensitivity(name); + /** + * Get current sensitivity calculator instance. + * @return sensitivity calculator + */ + public SensitivityCalculator getSensitivityCalculator() { + return sensitivityCalculator; } public void setSensitivity(String name) { Modified: isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SimulationServiceTest.java =================================================================== --- isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SimulationServiceTest.java 2009-04-21 12:54:14 UTC (rev 2132) +++ isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SimulationServiceTest.java 2009-04-21 12:55:06 UTC (rev 2133) @@ -46,7 +46,6 @@ /** * Test for {@link SimulationService}. * - * * @author chatellier * @version $Revision: 1.0 $ *

1 0

r2132 - in isis-fish/trunk/src/main: java/fr/ifremer/isisfish/ui/input java/fr/ifremer/isisfish/ui/sensitivity resources/i18n
by chatellier＠users.labs.libre-entreprise.org 21 Apr '09

21 Apr '09

Author: chatellier Date: 2009-04-21 12:54:14 +0000 (Tue, 21 Apr 2009) New Revision: 2132 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/input/InputNavigationTreeSelectionAdapter.java isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityNavigationTreeSelectionAdapter.java isis-fish/trunk/src/main/resources/i18n/isis-fish-en_GB.properties isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties Log: Traduction des noeuds de l'arbre Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/input/InputNavigationTreeSelectionAdapter.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/input/InputNavigationTreeSelectionAdapter.java 2009-04-21 12:26:00 UTC (rev 2131) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/input/InputNavigationTreeSelectionAdapter.java 2009-04-21 12:54:14 UTC (rev 2132) @@ -19,6 +19,8 @@ package fr.ifremer.isisfish.ui.input; +import static org.codelutin.i18n.I18n._; + import java.awt.Component; import javax.swing.JOptionPane; @@ -223,39 +225,39 @@ NavigationTreeNode root = builder.build(null, regionName, JAXXContextEntryDef.newDef(FisheryRegion.class), "$root", FisheryRegionUI.class, null); - childBuilder.build(builder.build(root, "Cells", "../cell", "$cells", CellUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.cells"), "../cell", "$cells", CellUI.class, null), true, Cell.class, fisheryRegion.getCell(), CellUI.class, null); - childBuilder.build(builder.build(root, "Zones", "../zone", "$zones", ZoneUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.zones"), "../zone", "$zones", ZoneUI.class, null), true, Zone.class, fisheryRegion.getZone(), ZoneUI.class, null); - childBuilder.build(builder.build(root, "Ports", "../port", "$ports", PortUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.ports"), "../port", "$ports", PortUI.class, null), true, Port.class, fisheryRegion.getPort(), PortUI.class, null); - NavigationTreeNode species = builder.build(root, "Species", "../species", "$species", SpeciesUI.class, null); + NavigationTreeNode species = builder.build(root, _("isisfish.input.tree.species"), "../species", "$species", SpeciesUI.class, null); for (Species specie : fisheryRegion.getSpecies()) { NavigationTreeNode speciesChild = builder.build(species, specie.toString(), "..[@topiaId=\"" + specie.getTopiaId() + "\"]", specie.getTopiaId(), SpeciesUI.class, null); - NavigationTreeNode populations = builder.build(speciesChild, "Populations", "../population", "$populations", PopulationUI.class, null); + NavigationTreeNode populations = builder.build(speciesChild, _("isisfish.input.tree.populations"), "../population", "$populations", PopulationUI.class, null); childBuilder.build(populations, true, Population.class, specie.getPopulation(), PopulationUI.class, null); } - childBuilder.build(builder.build(root, "Gears", "../gear", "$gears", GearUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.gears"), "../gear", "$gears", GearUI.class, null), true, Gear.class, fisheryRegion.getGear(), GearUI.class, null); - childBuilder.build(builder.build(root, "Metiers", "../metier", "$metiers", MetierUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.metiers"), "../metier", "$metiers", MetierUI.class, null), true, Metier.class, fisheryRegion.getMetier(), MetierUI.class, null); - childBuilder.build(builder.build(root, "TripTypes", "../tripType", "$tripTypes", TripTypeUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.triptypes"), "../tripType", "$tripTypes", TripTypeUI.class, null), true, TripType.class, fisheryRegion.getTripType(), TripTypeUI.class, null); - childBuilder.build(builder.build(root, "VesselTypes", "../vesselType", "$vesselTypes", VesselTypeUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.vesseltypes"), "../vesselType", "$vesselTypes", VesselTypeUI.class, null), true, VesselType.class, fisheryRegion.getVesselType(), VesselTypeUI.class, null); - childBuilder.build(builder.build(root, "SetOfVessels", "../setOfVessels", "$setOfVessels", SetOfVesselsUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.setofvessels"), "../setOfVessels", "$setOfVessels", SetOfVesselsUI.class, null), true, SetOfVessels.class, fisheryRegion.getSetOfVessels(), SetOfVesselsUI.class, null); - childBuilder.build(builder.build(root, "Strategies", "../strategy", "$strategies", StrategyUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.strategies"), "../strategy", "$strategies", StrategyUI.class, null), true, fr.ifremer.isisfish.entities.Strategy.class, fisheryRegion.getStrategy(), StrategyUI.class, null); } catch (Exception ex) { Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityNavigationTreeSelectionAdapter.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityNavigationTreeSelectionAdapter.java 2009-04-21 12:26:00 UTC (rev 2131) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/SensitivityNavigationTreeSelectionAdapter.java 2009-04-21 12:54:14 UTC (rev 2132) @@ -18,6 +18,7 @@ package fr.ifremer.isisfish.ui.sensitivity; +import static org.codelutin.i18n.I18n._; import fr.ifremer.isisfish.entities.Cell; import fr.ifremer.isisfish.entities.FisheryRegion; import fr.ifremer.isisfish.entities.Gear; @@ -194,39 +195,39 @@ NavigationTreeNode root = builder.build(null, regionName, JAXXContextEntryDef.newDef(FisheryRegion.class), "$root", FisheryRegionUI.class, null); - childBuilder.build(builder.build(root, "Cells", "../cell", "$cells", CellUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.cells"), "../cell", "$cells", CellUI.class, null), true, Cell.class, fisheryRegion.getCell(), CellUI.class, null); - childBuilder.build(builder.build(root, "Zones", "../zone", "$zones", ZoneUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.zones"), "../zone", "$zones", ZoneUI.class, null), true, Zone.class, fisheryRegion.getZone(), ZoneUI.class, null); - childBuilder.build(builder.build(root, "Ports", "../port", "$ports", PortUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.ports"), "../port", "$ports", PortUI.class, null), true, Port.class, fisheryRegion.getPort(), PortUI.class, null); - NavigationTreeNode species = builder.build(root, "Species", "../species", "$species", SpeciesUI.class, null); + NavigationTreeNode species = builder.build(root, _("isisfish.input.tree.species"), "../species", "$species", SpeciesUI.class, null); for (Species specie : fisheryRegion.getSpecies()) { NavigationTreeNode speciesChild = builder.build(species, specie.toString(), "..[@topiaId=\"" + specie.getTopiaId() + "\"]", specie.getTopiaId(), SpeciesUI.class, null); - NavigationTreeNode populations = builder.build(speciesChild, "Populations", "../population", "$populations", PopulationUI.class, null); + NavigationTreeNode populations = builder.build(speciesChild, _("isisfish.input.tree.populations"), "../population", "$populations", PopulationUI.class, null); childBuilder.build(populations, true, Population.class, specie.getPopulation(), PopulationUI.class, null); } - childBuilder.build(builder.build(root, "Gears", "../gear", "$gears", GearUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.gears"), "../gear", "$gears", GearUI.class, null), true, Gear.class, fisheryRegion.getGear(), GearUI.class, null); - childBuilder.build(builder.build(root, "Metiers", "../metier", "$metiers", MetierUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.metiers"), "../metier", "$metiers", MetierUI.class, null), true, Metier.class, fisheryRegion.getMetier(), MetierUI.class, null); - childBuilder.build(builder.build(root, "TripTypes", "../tripType", "$tripTypes", TripTypeUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.triptypes"), "../tripType", "$tripTypes", TripTypeUI.class, null), true, TripType.class, fisheryRegion.getTripType(), TripTypeUI.class, null); - childBuilder.build(builder.build(root, "VesselTypes", "../vesselType", "$vesselTypes", VesselTypeUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.vesseltypes"), "../vesselType", "$vesselTypes", VesselTypeUI.class, null), true, VesselType.class, fisheryRegion.getVesselType(), VesselTypeUI.class, null); - childBuilder.build(builder.build(root, "SetOfVessels", "../setOfVessels", "$setOfVessels", SetOfVesselsUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.setofvessels"), "../setOfVessels", "$setOfVessels", SetOfVesselsUI.class, null), true, SetOfVessels.class, fisheryRegion.getSetOfVessels(), SetOfVesselsUI.class, null); - childBuilder.build(builder.build(root, "Strategies", "../strategy", "$strategies", StrategyUI.class, null), + childBuilder.build(builder.build(root, _("isisfish.input.tree.strategies"), "../strategy", "$strategies", StrategyUI.class, null), true, fr.ifremer.isisfish.entities.Strategy.class, fisheryRegion.getStrategy(), StrategyUI.class, null); } catch (Exception ex) { Modified: isis-fish/trunk/src/main/resources/i18n/isis-fish-en_GB.properties =================================================================== --- isis-fish/trunk/src/main/resources/i18n/isis-fish-en_GB.properties 2009-04-21 12:26:00 UTC (rev 2131) +++ isis-fish/trunk/src/main/resources/i18n/isis-fish-en_GB.properties 2009-04-21 12:54:14 UTC (rev 2132) @@ -496,6 +496,16 @@ isisfish.input.newRegion=New region isisfish.input.selectRegion=Select region isisfish.input.title=Fishery input +isisfish.input.tree.cells=Cells +isisfish.input.tree.gears=Gears +isisfish.input.tree.metiers=Metiers +isisfish.input.tree.ports=Ports +isisfish.input.tree.setofvessels=Set of vessels +isisfish.input.tree.species=Species +isisfish.input.tree.strategies=Strategies +isisfish.input.tree.triptypes=Trip types +isisfish.input.tree.vesseltypes=Vessel types +isisfish.input.tree.zones=Zones isisfish.launch.anonymous=read only isisfish.launch.debugMode=debug mode isisfish.launch.email=email Modified: isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties =================================================================== --- isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties 2009-04-21 12:26:00 UTC (rev 2131) +++ isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties 2009-04-21 12:54:14 UTC (rev 2132) @@ -496,6 +496,16 @@ isisfish.input.newRegion=Nouvelle r\u00E9gion isisfish.input.selectRegion=S\u00E9lectionnez une r\u00E9gion isisfish.input.title=Saisie de la p\u00EAcherie +isisfish.input.tree.cells=Mailles +isisfish.input.tree.gears=Engins +isisfish.input.tree.metiers=M\u00E9tiers +isisfish.input.tree.ports=Ports +isisfish.input.tree.setofvessels=Flottilles +isisfish.input.tree.species=Esp\u00E8ces +isisfish.input.tree.strategies=Strat\u00E9gies +isisfish.input.tree.triptypes=Types de mar\u00E9e +isisfish.input.tree.vesseltypes=Types de navire +isisfish.input.tree.zones=Zones isisfish.launch.anonymous=lecture seule isisfish.launch.debugMode=debug mode isisfish.launch.email=courriel

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r2131 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity
by jcouteau＠users.labs.libre-entreprise.org 21 Apr '09

21 Apr '09

Author: jcouteau Date: 2009-04-21 12:26:00 +0000 (Tue, 21 Apr 2009) New Revision: 2131 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity/AbstractSensitivityCalculator.java Log: Fixed bug in R Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity/AbstractSensitivityCalculator.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity/AbstractSensitivityCalculator.java 2009-04-21 12:16:20 UTC (rev 2130) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/sensitivity/AbstractSensitivityCalculator.java 2009-04-21 12:26:00 UTC (rev 2131) @@ -42,7 +42,7 @@ String binfValues = ""; String bsup = "Bsup<-c(%s)"; String bsupValues = ""; - String attributes = "attributes(isis.factors)<-list(%s\"nomModel\"=\"isis-fish-externeR\")"; + String attributes = "attributes(isis.factors)<-list(%s\"nomModel\"=\"isis-fish-externeR\",names=c(\"nomFacteur\",\"Nominal\",\"Continu\",\"Binf\",\"Bsup\"))"; String attributesValues = ""; String isisfactors = "isis.factors<-data.frame(nomFacteur,Nominal,Continu,Binf,Bsup)";

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r2130 - isis-fish/trunk/src/main/resources/i18n
by jcouteau＠users.labs.libre-entreprise.org 21 Apr '09

21 Apr '09

Author: jcouteau Date: 2009-04-21 12:16:20 +0000 (Tue, 21 Apr 2009) New Revision: 2130 Modified: isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties Log: Fix bug 1822 "mauvaises traductions" Modified: isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties =================================================================== --- isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties 2009-04-21 10:18:03 UTC (rev 2129) +++ isis-fish/trunk/src/main/resources/i18n/isis-fish-fr_FR.properties 2009-04-21 12:16:20 UTC (rev 2130) @@ -40,7 +40,7 @@ Local\ repository\ don't\ exist= Local\ repository\ exists\ but\ it's\ not\ valide\ for\ current\ vcs\:\ %s= Master\ plan= -Month\ Gap\ BetweenRepro\ Recruitment= +Month\ Gap\ BetweenRepro\ Recruitment=Nombre de mois entre ponte et recrutement Normal\ stop\ thread,\ this\ is\ not\ an\ error= Not\ start\ simulation\ %s\ because\ user\ ask\ stop= Paste\ current\ selection\ (Ctrl-v)= @@ -210,7 +210,7 @@ isisfish.effortDescription.landingCosts=Co\u00FBts d'accastillage isisfish.effortDescription.otherRunningCost=Autres co\u00FBts isisfish.effortDescription.repairAndMaintenanceGearCost=Co\u00FBts de maintenance -isisfish.effortDescription.title=inputEffortDescription +isisfish.effortDescription.title=M\u00E9tiers pratiqu\u00E9s isisfish.effortDescription.toString=EffortDescription for %1$s with %2$s isisfish.effortDescription.unitCostOfFishing=Co\u00FBt unitaire de la p\u00EAche isisfish.equation.editor.title=Editeur d'\u00E9quation @@ -443,7 +443,7 @@ isisfish.gear.comments=Commentaires isisfish.gear.effortUnit=Unit\u00E9 d'effort isisfish.gear.name=Nom -isisfish.gear.rangeValues=Range of values +isisfish.gear.rangeValues=Gamme de valeurs isisfish.gear.standardisationFactor=Facteur de standardisation isisfish.gear.technicalParameter=Param\u00E8tre technique isisfish.gear.title=Engin @@ -700,10 +700,10 @@ isisfish.populationMigration.useEquation=Utiliser l'\u00E9quation isisfish.populationMigrationEmigration.coefficient=Coefficient isisfish.populationMigrationEmigration.departureZone=Zone de d\u00E9part -isisfish.populationMigrationEmigration.title=Population emmigration +isisfish.populationMigrationEmigration.title=Migration isisfish.populationMigrationImmigration.arrivalZone=Zone d'arriv\u00E9e isisfish.populationMigrationImmigration.coefficient=Coefficient -isisfish.populationMigrationImmigration.title=Population immigration +isisfish.populationMigrationImmigration.title=Immigration isisfish.populationMigrationMigration.arrivalZone=Zone d'arriv\u00E9e isisfish.populationMigrationMigration.coefficient=Coefficient isisfish.populationMigrationMigration.departureZone=Zone de d\u00E9part @@ -726,7 +726,7 @@ isisfish.populationSeasons.distributionSpawning=Distribution de la reproduction isisfish.populationSeasons.selectSeason=S\u00E9lectionnez une saison isisfish.populationSeasons.title=Saisons -isisfish.populationZones.betweenSpawningRecruitmentAreas=Correspondance entre les zones d'apparitions et de recrutement +isisfish.populationZones.betweenSpawningRecruitmentAreas=Correspondance entre les zones de reproduction et de recrutement isisfish.populationZones.selectPopulationAreas=S\u00E9lectionnez les zones des populations isisfish.populationZones.selectRecruitmentAreas=S\u00E9lectionnez les zones de recrutement isisfish.populationZones.selectSpawningAreas=S\u00E9lectionnez les zones de reproduction @@ -868,7 +868,7 @@ isisfish.setOfVessels.fixedCosts=Co\u00FBts fixes isisfish.setOfVessels.name=Nom isisfish.setOfVessels.numberOfVessels=Nombre de navires -isisfish.setOfVessels.technicalEfficiency= +isisfish.setOfVessels.technicalEfficiency=Technical efficiency isisfish.setOfVessels.title=Caract\u00E9ristiques isisfish.setOfVessels.vesselType=Type de navire isisfish.simpleResult.legendPanel=defaultToolTip-fr.ifremer.isisfish.map.SimpleIsisMapBeanBean.legendPanel @@ -913,7 +913,7 @@ isisfish.strategyMonthInfo.minInactivityDays=Jour minimums d'inactivit\u00E9 isisfish.strategyMonthInfo.numberOfTrips=Nombre de trajets isisfish.strategyMonthInfo.proportion=Proportion -isisfish.strategyMonthInfo.title=StrategyMonthInfo +isisfish.strategyMonthInfo.title=Saisie des mois isisfish.strategyMonthInfo.toString=%1$s %2$s isisfish.timeUnit.day=Jour isisfish.timeUnit.hours=Heures

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