August 2014 - Isis-fish-users - mailman.cloud.codelutin.com

Re: [Isis-fish-users] impossible d evaluer l equation selectivite : ANNULE
by Sigrid Lehuta 28 Aug '14

28 Aug '14

OK trouvé! 2014-08-28 14:22 GMT+02:00 Sigrid Lehuta <sigridlehuta(a)gmail.com>: > Caused by: fr.ifremer.isisfish.IsisFishRuntimeException: Impossible de > compiler le script : > C:\Users\slehuta\isis-fish-4\isis-build\sim_sqz1_2014-08-28-14-14\formules\SelectivityEquationfr_ifremer_isisfish_entities_Equation_1409212458025_0_3981853106136114.java > at > fr.ifremer.isisfish.util.EvaluatorHelper.compile(EvaluatorHelper.java:265) > at > fr.ifremer.isisfish.util.EvaluatorHelper.evaluate(EvaluatorHelper.java:227) > at > fr.ifremer.isisfish.entities.EquationImpl.evaluate(EquationImpl.java:75) > ... 26 more > Caused by: fr.ifremer.isisfish.IsisFishRuntimeException: Impossible de > compiler le script : -1 > at > fr.ifremer.isisfish.util.EvaluatorHelper.compile(EvaluatorHelper.java:262) > ... 28 more > > j ai verifié les equations de selectivité elles sont toutes bonnes et > basiques (return 1;) > > comment puis je savoir de quelle equation il s agit precisemment ? > je met la base en pj. il s agit de la pop veined squid et des engins OTB > ou OTH. > > Merci >

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impossible d evaluer l equation selectivite
by Sigrid Lehuta 28 Aug '14

28 Aug '14

Caused by: fr.ifremer.isisfish.IsisFishRuntimeException: Impossible de compiler le script : C:\Users\slehuta\isis-fish-4\isis-build\sim_sqz1_2014-08-28-14-14\formules\SelectivityEquationfr_ifremer_isisfish_entities_Equation_1409212458025_0_3981853106136114.java at fr.ifremer.isisfish.util.EvaluatorHelper.compile(EvaluatorHelper.java:265) at fr.ifremer.isisfish.util.EvaluatorHelper.evaluate(EvaluatorHelper.java:227) at fr.ifremer.isisfish.entities.EquationImpl.evaluate(EquationImpl.java:75) ... 26 more Caused by: fr.ifremer.isisfish.IsisFishRuntimeException: Impossible de compiler le script : -1 at fr.ifremer.isisfish.util.EvaluatorHelper.compile(EvaluatorHelper.java:262) ... 28 more j ai verifié les equations de selectivité elles sont toutes bonnes et basiques (return 1;) comment puis je savoir de quelle equation il s agit precisemment ? je met la base en pj. il s agit de la pop veined squid et des engins OTB ou OTH. Merci

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equation de recruitment : réponse et bug
by Sigrid Lehuta 28 Aug '14

28 Aug '14

Hello, en fait dans l'interface de saisie, la partie distribution du recrutement de l'onglet reproduction, a l'air d etre remplie avec une matrice meme si on en a pas saisi (cf capture d'ecran, ici il n'y a pas de matrice...). De plus ce problème n'est pas detecté par le verificateur de pecherie. Du coup, je croyais avoir une matrice d etalement du recrutement pour l'espece alors que non. Il faudrait que tout soit grisé ou au moins qu'il n'y ait pas de case remplie tant qu'on a pas entré de matrice de distribution du recrutement. Merci [image: Images intégrées 1] > ERROR|19:13:35,442|InProcessSimulatorLauncher.java|484|localSimulateSameThread|Error > during simulation > java.lang.NullPointerException > at fr.ifremer.isisfish.simulator.PopulationMonitor.getRecruitment( > PopulationMonitor.java:236) > at simulators.DefaultSimulator.computeMonth(DefaultSimulator. > java:436) > at simulators.DefaultSimulator.simulate(DefaultSimulator.java:218) > at simulators.SimulatorEffortByCell.simulate( > SimulatorEffortByCell.java:51) > at fr.ifremer.isisfish.simulator.launcher. > InProcessSimulatorLauncher.localSimulateSameThread( > InProcessSimulatorLauncher.java:441) > at fr.ifremer.isisfish.simulator.launcher. > InProcessSimulatorLauncher$SimThread.run(InProcessSimulatorLauncher. > java:271) > INFO|19:13:35,458|InProcessSimulatorLauncher.java|513| > localSimulateSameThread|Simulation time: 5.263 > INFO|19:13:35,458|IsisCacheBackendOnGuava.java|239|adjustedCache|Cache > size ajusted to 1,586Ko (equivalent to 2 step need) > INFO|19:13:35,474|InProcessSimulatorLauncher.java|202|message|Simulation > terminée > INFO|19:13:35,474|SimulationControl.java|206|setText|Simulation terminée > > > et voici l equation qui compile: > // forced recruitment each year > int y = context.getSimulationControl().getStep().getYear(); > double[] poly08 = {0,0.072,0.038,0.068,0.03,0. > 034,0.083,0.016,0,0.008,0.01,0,0.015,0,0.046,0,0.035,0,0,0, > 0.034,0.053,0.031,0.03,0.036,0,0.024,0,0.063,0,0,0.03,0. > 132,0.076,0,0.039,0,0,0}; > double[] poly09 = {0,0.105,0.062,0.061,0.014,0. > 035,0.063,0.017,0,0,0,0,0.01,0,0.041,0,0.013,0,0,0,0.024,0. > 061,0.054,0.02,0.033,0.014,0.016,0,0.038,0,0,0.114,0.085,0. > 045,0,0.035,0.018,0,0.021}; > double[] coeffs = {0,0.104,0.03725,0.06975,0.01925,0.0345,0.069,0.01625,0, > 0.006,0.005,0,0.0115,0,0.041,0,0.03525,0,0,0,0.033,0.07775, > 0.0535,0.02225,0.03925,0.01075,0.0175,0,0.042,0,0,0. > 07675,0.08325,0.05025,0,0.026,0.01075,0,0.00975}; > > // recruitment TS 2008-2010 > double [] TSRec ={19488138,60032669}; // from nb at age WGNSSK 2012 > // matrix result / zone > > double val = 38808489; // average 2003-2009 > for(Zone zr : zoneRepro){ > if(prepro == 1){ > if(y<2){ > val = TSRec[y]; > if(y == 0){ coeffs = poly08; > }else { coeffs = poly09;} > } > String zoneName = zr.getName(); > String indice = zoneName.replaceAll("Poly([0-9]+)", "$1"); > int i = Integer.parseInt(indice); > double valzone = coeffs[i] * val; > > result.setValue(zr,valzone); > } else {result.setValue(zr,0.0);} > } > return 0; > > -- > Sigrid LEHUTA > ~ ><> ~ > Ecologie et Modèles pour l'Halieutique > IFREMER Nantes > Rue de l'Ile d'Yeu - BP 21105, 44311 Nantes Cedex 03, France > Tél : 02 40 37 40 09 (N° interne : 8009) > > Membre de l'Association Française d'Halieutique > http://sirs.agrocampus-ouest.fr/AFH/index.php/en > > "Like all creative activities, modelling gives joy to its maker." A. > Saltelli. > _______________________________________________ > Isis-fish-users mailing list > Isis-fish-users(a)list.isis-fish.org > http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-users >

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erreur dans l'equation de recruitment que je ne trouve pas...
by Sigrid LEHUTA 27 Aug '14

27 Aug '14

Est ce que tu vois ce qui cloche? Merci Voici le log : ERROR|19:13:35,442|InProcessSimulatorLauncher.java|484|localSimulateSameThread|Error during simulation java.lang.NullPointerException at fr.ifremer.isisfish.simulator.PopulationMonitor.getRecruitment(PopulationMonitor.java:236) at simulators.DefaultSimulator.computeMonth(DefaultSimulator.java:436) at simulators.DefaultSimulator.simulate(DefaultSimulator.java:218) at simulators.SimulatorEffortByCell.simulate(SimulatorEffortByCell.java:51) at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher.localSimulateSameThread(InProcessSimulatorLauncher.java:441) at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher$SimThread.run(InProcessSimulatorLauncher.java:271) INFO|19:13:35,458|InProcessSimulatorLauncher.java|513|localSimulateSameThread|Simulation time: 5.263 INFO|19:13:35,458|IsisCacheBackendOnGuava.java|239|adjustedCache|Cache size ajusted to 1,586Ko (equivalent to 2 step need) INFO|19:13:35,474|InProcessSimulatorLauncher.java|202|message|Simulation terminée INFO|19:13:35,474|SimulationControl.java|206|setText|Simulation terminée et voici l equation qui compile: // forced recruitment each year int y = context.getSimulationControl().getStep().getYear(); double[] poly08 = {0,0.072,0.038,0.068,0.03,0.034,0.083,0.016,0,0.008,0.01,0,0.015,0,0.046,0,0.035,0,0,0,0.034,0.053,0.031,0.03,0.036,0,0.024,0,0.063,0,0,0.03,0.132,0.076,0,0.039,0,0,0}; double[] poly09 = {0,0.105,0.062,0.061,0.014,0.035,0.063,0.017,0,0,0,0,0.01,0,0.041,0,0.013,0,0,0,0.024,0.061,0.054,0.02,0.033,0.014,0.016,0,0.038,0,0,0.114,0.085,0.045,0,0.035,0.018,0,0.021}; double[] coeffs = {0,0.104,0.03725,0.06975,0.01925,0.0345,0.069,0.01625,0,0.006,0.005,0,0.0115,0,0.041,0,0.03525,0,0,0,0.033,0.07775,0.0535,0.02225,0.03925,0.01075,0.0175,0,0.042,0,0,0.07675,0.08325,0.05025,0,0.026,0.01075,0,0.00975}; // recruitment TS 2008-2010 double [] TSRec ={19488138,60032669}; // from nb at age WGNSSK 2012 // matrix result / zone double val = 38808489; // average 2003-2009 for(Zone zr : zoneRepro){ if(prepro == 1){ if(y<2){ val = TSRec[y]; if(y == 0){ coeffs = poly08; }else { coeffs = poly09;} } String zoneName = zr.getName(); String indice = zoneName.replaceAll("Poly([0-9]+)", "$1"); int i = Integer.parseInt(indice); double valzone = coeffs[i] * val; result.setValue(zr,valzone); } else {result.setValue(zr,0.0);} } return 0; -- Sigrid LEHUTA ~ ><> ~ Ecologie et Modèles pour l'Halieutique IFREMER Nantes Rue de l'Ile d'Yeu - BP 21105, 44311 Nantes Cedex 03, France Tél : 02 40 37 40 09 (N° interne : 8009) Membre de l'Association Française d'Halieutique http://sirs.agrocampus-ouest.fr/AFH/index.php/en "Like all creative activities, modelling gives joy to its maker." A. Saltelli.

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un bug?
by Sigrid Lehuta 19 Aug '14

19 Aug '14

hello, je viens de rencontré un probleme bizarre et je veux savoir si c'est unn bug ou si c est normal et qu il faut donc y faire attention Quand j initialise mes 2 maps de cette maniere double[] toto = {1e20,1e20,1e20,1e20,1e20,1e20,1e20,1e20,1e20,1e20,1e20}; val.put(pop,toto); qval.put(pop,toto); les changements sur val affectent aussi qval tandis que je ne peux pas modifier la valeur de qval. ex: qd je fais qval.get(pop)[gp.getId()] = 5; val.get(pop)[gp.getId()] = 30; qval.get(pop)[gp.getId()] prend la valeur 30 !! Par contre ca fonctionne si je fais : double[] toto = {1e20,1e20,1e20,1e20,1e20,1e20,1e20,1e20,1e20,1e20,1e20}; double[] tata = {0,0,0,0,0,0,0,0,0,0,0}; val.put(pop,toto); qval.put(pop,tata); C'est une subtilité de java? Ca vient des matrices creuses? Merci!

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Re: [Isis-fish-users] template optimisation sequentiel + parallele
by Sigrid Lehuta 19 Aug '14

19 Aug '14

merci j'essaie. Le 19 août 2014 11:16, Eric Chatellier <chatellier(a)codelutin.com> a écrit : > Le 19/08/2014 10:11, Sigrid Lehuta a écrit : > > re-hello, > re-salut, > > j'ai besoin d'utiliser le type de script developpé pour les algo > genetiques > > pour Audric dans lesquels une partie des simus se fait en parrallele puis > > certaine en sequentiel avant de relancer un lot en parallele. > > > > cela avait il ete testé avec succes ? > > si oui puis utiliser ce script comme exemple? > Il me semble que c'est le script d'algo genetique qu'Audric avait tenté de > faire > avant que les scripts d'optimisation soient disponibles dans IsisFish. > > Je t'envoi en PJ une version d'un script d'optimisation que nous à fourni > Audric. > > Je vais essayer de trouver du temps pour commiter un script d'exemple et > faire > un peu de doc là dessus. > > N’hésites pas si tu souhaites des précisions. > > -- > Éric Chatellier - www.codelutin.com - 02.40.50.29.28 > > > _______________________________________________ > Isis-fish-users mailing list > Isis-fish-users(a)list.isis-fish.org > http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-users > >

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