May 2020 - Isis-fish-users - mailman.cloud.codelutin.com

MIN TIME BETWEEN TRIP
by Sigrid Lehuta 10 May '22

10 May '22

Bonjour, il semble que "min time between trip" ne soit plus utilisé dans le calcul du nb de marées. Cette equation est dans les sources et je ne sais pas comment y acceder avec le nouveau site. Pouvez vous verifier ? Merci

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ISIS - Système de projection
by Charlotte Sève 08 Mar '21

08 Mar '21

Hello, Est-ce que quelqu'un saurait quel est le système de projection utilisé dans ISIS ? Merci beaucoup ! Ciao Charlotte -- *--* *Charlotte Sève*, PhD Student CRIOBE (USR 3278 CNRS-EPHE-UPVD) Phone: +33 6 21 10 10 16 | Skype: charlotteseve Mail: charlotte.m.seve(a)gmail.com

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Out of memory error; java heap space; GC overhead limit exceeded
by Audric Vigier 08 Sep '20

08 Sep '20

Bonjour, Je fais tourner mes simulations sur une longue durée; 40 ans, au lieu de 10 habituellement. Je les ai fait tourner dans un plan de simulation test (21 simulations, pour 19 en //; je sais c'est pas malin, mais l'idée étant de faire tourner ça la nuit ça allait). Elles ne sont pas allées jusqu'aux 40 ans, mais se sont arrêtées avant, entre 36 et 39 ans ; voir PJ. En regardant dans le debug des simulations, je retrouve 20 fois Java heap space, et une fois GC overhead limit exceeded (voir bas de message pour les 3 différentes erreurs que j'ai trouvées dans le debug) Je travaille avec des simulations utilisant 4 règles, dont 2 produisent des .csv (5.5MB pour le plus lourd). Elles ont besoin de paramètres définis dans le contexte (context.setComputeValue[...]), il y en a des milliers. Je demande à supprimer les résultats après les exports (bien qu'en réalité, le répertoire results/matrix de chaque simulation contient plein de .gz). Je sauvegarde 4 exports : Abondances, AbondancesBeginMonth, CapturesNombre et RejetsNombre. Les 2 derniers sont très lourds et avoisinent les 1GB chacun; contre environ 25 MB pour chaque export d'abondance. Quelles pistes pour éviter d'en demander trop à ISIS? A+ Audric ERROR|17:35:59,883|InProcessSimulatorLauncher.java|476|localSimulateSameThread|Error during simulation java.lang.OutOfMemoryError: GC overhead limit exceeded at java.util.Arrays.copyOf(Unknown Source) ~[?:1.8.0_211] at java.lang.AbstractStringBuilder.ensureCapacityInternal(Unknown Source) ~[?:1.8.0_211] at java.lang.AbstractStringBuilder.append(Unknown Source) ~[?:1.8.0_211] at java.lang.StringBuilder.append(Unknown Source) ~[?:1.8.0_211] at java.lang.StringBuilder.append(Unknown Source) ~[?:1.8.0_211] at simulators.DefaultSimulatorResultBeforeCondition.computeMonth(DefaultSimulatorResultBeforeCondition.java:450) ~[?:?] at simulators.DefaultSimulatorResultBeforeCondition.simulate(DefaultSimulatorResultBeforeCondition.java:259) ~[?:?] at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher.localSimulateSameThread(InProcessSimulatorLauncher.java:430) [isis-fish-4.4.2.2.jar:4.4.2.2] at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher$SimThread.run(InProcessSimulatorLauncher.java:260) [isis-fish-4.4.2.2.jar:4.4.2.2] ERROR|17:35:59,914|DriverManagerConnectionProviderImpl.java|332|close|Connection leak detected: there are 3 unclosed connections upon shutting down pool jdbc:h2:file:D:\isis-fish-4\isis-database\simulations\sim_MSYDerivationTest_2019-10-08-13-47_6\data\data;FILE_LOCK=file;LOG=1;AUTO_SERVER=TRUE;DEFAULT_LOCK_TIMEOUT=1000;DB_CLOSE_DELAY=0;LOCK_MODE=3;TRACE_LEVEL_FILE=0;TRACE_LEVEL_SYSTEM_OUT=0 ERROR|17:40:33,132|InProcessSimulatorLauncher.java|476|localSimulateSameThread|Error during simulation java.lang.OutOfMemoryError: Java heap space at java.util.Arrays.copyOfRange(Unknown Source) ~[?:1.8.0_211] at java.lang.StringBuffer.toString(Unknown Source) ~[?:1.8.0_211] at org.nuiton.math.matrix.BasicMatrix.toString(BasicMatrix.java:380) ~[nuiton-matrix-2.5.2.jar:2.5.2] at org.nuiton.math.matrix.MatrixNDImpl.toString(MatrixNDImpl.java:206) ~[nuiton-matrix-2.5.2.jar:2.5.2] at java.lang.String.valueOf(Unknown Source) ~[?:1.8.0_211] at java.lang.StringBuilder.append(Unknown Source) ~[?:1.8.0_211] at simulators.DefaultSimulatorResultBeforeCondition.computeMonth(DefaultSimulatorResultBeforeCondition.java:446) ~[?:?] at simulators.DefaultSimulatorResultBeforeCondition.simulate(DefaultSimulatorResultBeforeCondition.java:259) ~[?:?] at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher.localSimulateSameThread(InProcessSimulatorLauncher.java:430) [isis-fish-4.4.2.2.jar:4.4.2.2] at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher$SimThread.run(InProcessSimulatorLauncher.java:260) [isis-fish-4.4.2.2.jar:4.4.2.2] ERROR|17:40:33,148|DriverManagerConnectionProviderImpl.java|332|close|Connection leak detected: there are 3 unclosed connections upon shutting down pool jdbc:h2:file:D:\isis-fish-4\isis-database\simulations\sim_MSYDerivationTest_2019-10-08-13-47_13\data\data;FILE_LOCK=file;LOG=1;AUTO_SERVER=TRUE;DEFAULT_LOCK_TIMEOUT=1000;DB_CLOSE_DELAY=0;LOCK_MODE=3;TRACE_LEVEL_FILE=0;TRACE_LEVEL_SYSTEM_OUT=0 ERROR|17:35:59,883|InProcessSimulatorLauncher.java|476|localSimulateSameThread|Error during simulation java.lang.OutOfMemoryError: GC overhead limit exceeded at java.util.Arrays.copyOf(Unknown Source) ~[?:1.8.0_211] at java.lang.AbstractStringBuilder.ensureCapacityInternal(Unknown Source) ~[?:1.8.0_211] at java.lang.AbstractStringBuilder.append(Unknown Source) ~[?:1.8.0_211] at java.lang.StringBuilder.append(Unknown Source) ~[?:1.8.0_211] at java.lang.StringBuilder.append(Unknown Source) ~[?:1.8.0_211] at simulators.DefaultSimulatorResultBeforeCondition.computeMonth(DefaultSimulatorResultBeforeCondition.java:450) ~[?:?] at simulators.DefaultSimulatorResultBeforeCondition.simulate(DefaultSimulatorResultBeforeCondition.java:259) ~[?:?] at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher.localSimulateSameThread(InProcessSimulatorLauncher.java:430) [isis-fish-4.4.2.2.jar:4.4.2.2] at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher$SimThread.run(InProcessSimulatorLauncher.java:260) [isis-fish-4.4.2.2.jar:4.4.2.2] ERROR|17:35:59,914|DriverManagerConnectionProviderImpl.java|332|close|Connection leak detected: there are 3 unclosed connections upon shutting down pool jdbc:h2:file:D:\isis-fish-4\isis-database\simulations\sim_MSYDerivationTest_2019-10-08-13-47_6\data\data;FILE_LOCK=file;LOG=1;AUTO_SERVER=TRUE;DEFAULT_LOCK_TIMEOUT=1000;DB_CLOSE_DELAY=0;LOCK_MODE=3;TRACE_LEVEL_FILE=0;TRACE_LEVEL_SYSTEM_OUT=0

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[ANN] - ISIS-Fish 4.4.4.3 released
by Eric Chatellier 15 May '20

15 May '20

The ISIS-Fish team is pleased to announce the isis-fish-4.4.4.3 release! Simulateur de pêcherie complexe. Documentation of the project can be found here: http://isis-fish.org Changes ------- Changes in this version includes: Anomalie #10835: Retrograder la version de H2 Downloads --------- For a manual installation, you can download files here: https://forge.codelutin.com/projects/isis-fish/files * https://forge.codelutin.com/attachments/download/6171/isis-fish-4.4.4.3-bin… Have fun! -ISIS-Fish team -- Éric Chatellier - www.codelutin.com - 02.40.50.29.28

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erreur en rechargeant une ancienne simu (V4.4.2.5) dans la version 4.4.4.1
by Sigrid LEHUTA 15 May '20

15 May '20

org.hibernate.service.spi.ServiceException: Unable to create requested service [org.hibernate.engine.jdbc.env.spi.JdbcEnvironment] at org.hibernate.service.internal.AbstractServiceRegistryImpl.createService(AbstractServiceRegistryImpl.java:275) at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:237) at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:214) at org.hibernate.id.factory.internal.DefaultIdentifierGeneratorFactory.injectServices(DefaultIdentifierGeneratorFactory.java:152) at org.hibernate.service.internal.AbstractServiceRegistryImpl.injectDependencies(AbstractServiceRegistryImpl.java:286) at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:243) at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:214) at org.hibernate.boot.internal.InFlightMetadataCollectorImpl. (InFlightMetadataCollectorImpl.java:175) at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.complete(MetadataBuildingProcess.java:118) at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.build(MetadataBuildingProcess.java:83) at org.hibernate.boot.internal.MetadataBuilderImpl.build(MetadataBuilderImpl.java:473) at org.hibernate.boot.internal.MetadataBuilderImpl.build(MetadataBuilderImpl.java:84) at org.nuiton.topia.migration.TopiaMigrationEngine.preInit(TopiaMigrationEngine.java:244) at org.nuiton.topia.framework.TopiaContextImpl.preInitServices(TopiaContextImpl.java:270) at org.nuiton.topia.framework.TopiaContextImpl. (TopiaContextImpl.java:222) at org.nuiton.topia.TopiaContextFactory.getContext(TopiaContextFactory.java:182) at fr.ifremer.isisfish.datastore.DataStorage.getStorage(DataStorage.java:223) at fr.ifremer.isisfish.ui.simulator.ParamsHandler.regionChange(ParamsHandler.java:176) at fr.ifremer.isisfish.ui.simulator.ParamsHandler.lambda$regionChange$1(ParamsHandler.java:260) at java.awt.event.InvocationEvent.dispatch(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$500(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.WaitDispatchSupport$2.run(Unknown Source) at java.awt.WaitDispatchSupport$4.run(Unknown Source) at java.awt.WaitDispatchSupport$4.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.awt.WaitDispatchSupport.enter(Unknown Source) at java.awt.Dialog.show(Unknown Source) at java.awt.Component.show(Unknown Source) at java.awt.Component.setVisible(Unknown Source) at java.awt.Window.setVisible(Unknown Source) at java.awt.Dialog.setVisible(Unknown Source) at org.jdesktop.swingx.JXErrorPane$1.run(JXErrorPane.java:398) at org.jdesktop.swingx.JXErrorPane.showDialog(JXErrorPane.java:411) at fr.ifremer.isisfish.util.ErrorHelper.showErrorDialog(ErrorHelper.java:76) at fr.ifremer.isisfish.IsisFish.lambda$null$0(IsisFish.java:689) at java.lang.ThreadGroup.uncaughtException(Unknown Source) at java.lang.ThreadGroup.uncaughtException(Unknown Source) at java.awt.EventDispatchThread.processException(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) Caused by: org.hibernate.HibernateException: com.zaxxer.hikari.pool.HikariPool$PoolInitializationException: Failed to initialize pool: Erreur générale: "java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6]" General error: "java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6]" [50000-200] at org.hibernate.hikaricp.internal.HikariCPConnectionProvider.configure(HikariCPConnectionProvider.java:63) at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.configureService(StandardServiceRegistryImpl.java:107) at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:246) at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:214) at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.buildJdbcConnectionAccess(JdbcEnvironmentInitiator.java:145) at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:66) at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:35) at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.initiateService(StandardServiceRegistryImpl.java:101) at org.hibernate.service.internal.AbstractServiceRegistryImpl.createService(AbstractServiceRegistryImpl.java:263) ... 52 more Caused by: com.zaxxer.hikari.pool.HikariPool$PoolInitializationException: Failed to initialize pool: Erreur générale: "java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6]" General error: "java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6]" [50000-200] at com.zaxxer.hikari.pool.HikariPool.throwPoolInitializationException(HikariPool.java:576) at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:562) at com.zaxxer.hikari.pool.HikariPool. (HikariPool.java:115) at com.zaxxer.hikari.HikariDataSource. (HikariDataSource.java:81) at org.hibernate.hikaricp.internal.HikariCPConnectionProvider.configure(HikariCPConnectionProvider.java:59) ... 60 more Caused by: org.h2.jdbc.JdbcSQLNonTransientException: Erreur générale: "java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6]" General error: "java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6]" [50000-200] at org.h2.message.DbException.getJdbcSQLException(DbException.java:505) at org.h2.message.DbException.getJdbcSQLException(DbException.java:429) at org.h2.message.DbException.get(DbException.java:194) at org.h2.message.DbException.convert(DbException.java:347) at org.h2.engine.Database.openDatabase(Database.java:333) at org.h2.engine.Database. (Database.java:301) at org.h2.engine.Engine.openSession(Engine.java:74) at org.h2.engine.Engine.openSession(Engine.java:192) at org.h2.engine.Engine.createSessionAndValidate(Engine.java:171) at org.h2.engine.Engine.createSession(Engine.java:166) at org.h2.engine.Engine.createSession(Engine.java:29) at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:340) at org.h2.jdbc.JdbcConnection. (JdbcConnection.java:173) at org.h2.jdbc.JdbcConnection. (JdbcConnection.java:152) at org.h2.Driver.connect(Driver.java:69) at com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:136) at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:369) at com.zaxxer.hikari.pool.PoolBase.newPoolEntry(PoolBase.java:198) at com.zaxxer.hikari.pool.HikariPool.createPoolEntry(HikariPool.java:467) at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:541) ... 63 more Caused by: java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6] at org.h2.mvstore.DataUtils.newIllegalStateException(DataUtils.java:950) at org.h2.mvstore.MVStore.readPage(MVStore.java:2213) at org.h2.mvstore.MVMap.readPage(MVMap.java:672) at org.h2.mvstore.MVMap.readOrCreateRootPage(MVMap.java:688) at org.h2.mvstore.MVMap.setRootPos(MVMap.java:682) at org.h2.mvstore.MVStore.openMap(MVStore.java:576) at org.h2.mvstore.MVStore.openMap(MVStore.java:535) at org.h2.mvstore.MVStore.openMap(MVStore.java:516) at org.h2.mvstore.MVStore.removeMap(MVStore.java:2742) at org.h2.engine.Database.handleUpgradeIssues(Database.java:866) at org.h2.engine.Database.open(Database.java:742) at org.h2.engine.Database.openDatabase(Database.java:307) ... 78 more Caused by: java.lang.IllegalStateException: Unsupported type 17 [1.4.200/3] at org.h2.mvstore.DataUtils.newIllegalStateException(DataUtils.java:950) at org.h2.mvstore.type.ObjectDataType.newType(ObjectDataType.java:165) at org.h2.mvstore.type.ObjectDataType.read(ObjectDataType.java:229) at org.h2.mvstore.type.ObjectDataType.read(ObjectDataType.java:114) at org.h2.mvstore.Page.read(Page.java:605) at org.h2.mvstore.Page.read(Page.java:239) at org.h2.mvstore.MVStore.readPage(MVStore.java:2211) ... 88 more -- NB : Please note that I do not work on Monday mornings and Wednesday afternoons Sigrid LEHUTA ~ ><> ~ Ecologie et Modèles pour l'Halieutique IFREMER Nantes Rue de l'Ile d'Yeu - BP 21105, 44311 Nantes Cedex 03, France Tél : 02 40 37 42 38 (N° interne : 8238) Membre de l'Association Française d'Halieutique https://www.association-francaise-halieutique.fr/

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ISIS-4.4.2.5 probleme importation
by Charlotte Sève 11 May '20

11 May '20

Bonjour ! J'aurais besoin d'un petit coup de pouce. J'essaye de faire tourner ISIS sur le serveur de mon laboratoire et je n'arrive pas à importer une région que j'ai construite sur mon ordinateur. Est-ce que quelqu'un aurait une idée du problème ? Voilà le message d'erreur : java.lang.RuntimeException: java.lang.reflect.InvocationTargetException at jaxx.runtime.JAXXUtil$1.invoke(JAXXUtil.java:260) at com.sun.proxy.$Proxy19.actionPerformed(Unknown Source) at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.setPressed(Unknown Source) at javax.swing.AbstractButton.doClick(Unknown Source) at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source) at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown Source) at java.awt.Component.processMouseEvent(Unknown Source) at javax.swing.JComponent.processMouseEvent(Unknown Source) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Window.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$500(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at jaxx.runtime.JAXXUtil$1.invoke(JAXXUtil.java:253) ... 39 more Caused by: fr.ifremer.isisfish.IsisFishRuntimeException: Impossible d'importer la région at fr.ifremer.isisfish.ui.input.InputHandler.importRegionAndRename(InputHandler.java:323) at fr.ifremer.isisfish.ui.input.InputUI.doActionPerformed__on__menuRegionImportRename(InputUI.java:315) ... 44 more Caused by: fr.ifremer.isisfish.datastore.StorageException: Can't import file C:\Users\cseve\Desktop\sar_gdl_v2_v4.4.2.5.zip at fr.ifremer.isisfish.datastore.RegionStorage.importAndRenameZip(RegionStorage.java:450) at fr.ifremer.isisfish.ui.input.InputHandler.importRegionAndRename(InputHandler.java:318) ... 45 more Caused by: org.nuiton.topia.TopiaException: topia.persistence.error.on.restore at org.nuiton.topia.framework.TopiaContextImpl.restore(TopiaContextImpl.java:1207) at fr.ifremer.isisfish.datastore.RegionStorage.importAndRenameZip(RegionStorage.java:427) ... 46 more Caused by: org.hibernate.exception.SQLGrammarException: could not execute statement at org.hibernate.exception.internal.SQLStateConversionDelegate.convert(SQLStateConversionDelegate.java:106) at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:42) at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:111) at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:97) at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:178) at org.hibernate.engine.query.spi.NativeSQLQueryPlan.performExecuteUpdate(NativeSQLQueryPlan.java:204) at org.hibernate.internal.SessionImpl.executeNativeUpdate(SessionImpl.java:1575) at org.hibernate.query.internal.NativeQueryImpl.doExecuteUpdate(NativeQueryImpl.java:274) at org.hibernate.query.internal.AbstractProducedQuery.executeUpdate(AbstractProducedQuery.java:1504) at org.nuiton.topia.framework.TopiaContextImpl.restore(TopiaContextImpl.java:1202) ... 47 more Caused by: org.h2.jdbc.JdbcSQLException: La table "ACTIVERULE" existe déjà Table "ACTIVERULE" already exists; SQL statement: CREATE CACHED TABLE PUBLIC.ACTIVERULE( TOPIAID VARCHAR(255) NOT NULL, TOPIAVERSION BIGINT NOT NULL, TOPIACREATEDATE TIMESTAMP, ACTIVERULESTEP INTEGER, NAME VARCHAR(2147483647), PARAM VARCHAR(2147483647) ) [42101-197] at org.h2.message.DbException.getJdbcSQLException(DbException.java:357) at org.h2.message.DbException.get(DbException.java:179) at org.h2.message.DbException.get(DbException.java:155) at org.h2.command.ddl.CreateTable.update(CreateTable.java:86) at org.h2.command.dml.RunScriptCommand.execute(RunScriptCommand.java:79) at org.h2.command.dml.RunScriptCommand.update(RunScriptCommand.java:58) at org.h2.command.CommandContainer.update(CommandContainer.java:102) at org.h2.command.Command.executeUpdate(Command.java:261) at org.h2.jdbc.JdbcPreparedStatement.executeUpdateInternal(JdbcPreparedStatement.java:199) at org.h2.jdbc.JdbcPreparedStatement.executeUpdate(JdbcPreparedStatement.java:153) at com.zaxxer.hikari.pool.ProxyPreparedStatement.executeUpdate(ProxyPreparedStatement.java:61) at com.zaxxer.hikari.pool.HikariProxyPreparedStatement.executeUpdate(HikariProxyPreparedStatement.java) at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:175) ... 52 more Merci beaucoup et bonne soirée, Charlotte -- *Charlotte Sève*, PhD Student CRIOBE - USR 3278 (CNRS-EPHE-UPVD) Phone: +33 6 21 10 10 16 Skype: charlotteseve

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Equation d'inactivité
by Charlotte Sève 11 May '20

11 May '20

Re, J'ai rentré une équation d'inactivité qui a exactement la même forme que sur le site de ISIS fish, et pourtant je n'arrive pas à vérifier l'équation. Il y a 12 erreurs similaires de ce type : "Syntax error on token ")", ) expected after this token" Voici l'équation que j'ai entrée: Date date = context.getSimulationControl().getDate(); if(Month.JANUARY.equals(date.getMonth()) { return 14.0;} else if(Month.FEBRUARY.equals(date.getMonth()) { return 11.0;} else if(Month.MARCH.equals(date.getMonth()) { return 15.0;} else if(Month.APRIL.equals(date.getMonth()) { return 12.0;} else if(Month.MAY.equals(date.getMonth()) { return 14.0;} else if(Month.JUNE.equals(date.getMonth()) { return 12.0;} else if(Month.JULY.equals(date.getMonth()) { return 14.0;} else if(Month.AUGUST.equals(date.getMonth()) { return 14.0;} else if(Month.SEPTEMBER.equals(date.getMonth()) { return 14.0;} else if(Month.OCTOBER.equals(date.getMonth()) { return 18.0;} else if(Month.NOVEMBER.equals(date.getMonth()) { return 18.0;} else if(Month.DECEMBER.equals(date.getMonth()) { return 18.0;} Si quelqu'un a une petite idée... Merci et bonne soirée ! Charlotte -- *Charlotte Sève*, PhD Student CRIOBE - USR 3278 (CNRS-EPHE-UPVD) Phone: +33 6 21 10 10 16 Skype: charlotteseve

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acces a la matrice de recruitment d'une pop depuis l'equation de recruitment d'une autre pop
by slehuta 07 May '20

07 May '20

Hello question tordue : J aurais besoin depuis l'équation de recruitment de ma pop1, de recupérer la matrice "result" de pop2, accessible dans l'equation de recruitment pop2 (Matrice(step) [nombre d'oeufs,zone recru] apres connectivité + gap + etalement + mortalité). Est ce possible ? j ai eu un bon plantage avec popMonitor(step, pop2).getRecruitment(). A ce propos, je code de getRecruitment est hardu, je n'ai pas su dire si cela applique aussi l'équation de recruitment ou si ca produit seulement le "result" rendu dispo dans l'equation de recrutement ? Merci Sigrid

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