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Bug version 4445
by Charlotte Sève 08 Sep '20

08 Sep '20

Bonjour, J'ai ouvert pour la première fois ma région avec la version 4.5.0.0 de ISIS et il y a quelques bug. Je n'arrive pas à modifier toute la partie population de ma région (on m'envoie un message d'erreur). Aussi, lorsque je suis dans des onglets stratégie ou engins - dès que je change d'onglet j'ai un message comme quoi ma page a été modifiée me demandant si je veux enregistrer les modifications, alors que rien n'a été modifié. Est-ce que vous auriez une idée de l'origine du problème ? Ci-joint de débug, Merci Charlotte -- *Charlotte Sève*, PhD Student CRIOBE - USR 3278 (CNRS-EPHE-UPVD) Phone: +33 6 21 10 10 16 Skype: charlotteseve

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Out of memory error; java heap space; GC overhead limit exceeded
by Audric Vigier 08 Sep '20

08 Sep '20

Bonjour, Je fais tourner mes simulations sur une longue durée; 40 ans, au lieu de 10 habituellement. Je les ai fait tourner dans un plan de simulation test (21 simulations, pour 19 en //; je sais c'est pas malin, mais l'idée étant de faire tourner ça la nuit ça allait). Elles ne sont pas allées jusqu'aux 40 ans, mais se sont arrêtées avant, entre 36 et 39 ans ; voir PJ. En regardant dans le debug des simulations, je retrouve 20 fois Java heap space, et une fois GC overhead limit exceeded (voir bas de message pour les 3 différentes erreurs que j'ai trouvées dans le debug) Je travaille avec des simulations utilisant 4 règles, dont 2 produisent des .csv (5.5MB pour le plus lourd). Elles ont besoin de paramètres définis dans le contexte (context.setComputeValue[...]), il y en a des milliers. Je demande à supprimer les résultats après les exports (bien qu'en réalité, le répertoire results/matrix de chaque simulation contient plein de .gz). Je sauvegarde 4 exports : Abondances, AbondancesBeginMonth, CapturesNombre et RejetsNombre. Les 2 derniers sont très lourds et avoisinent les 1GB chacun; contre environ 25 MB pour chaque export d'abondance. Quelles pistes pour éviter d'en demander trop à ISIS? A+ Audric ERROR|17:35:59,883|InProcessSimulatorLauncher.java|476|localSimulateSameThread|Error during simulation java.lang.OutOfMemoryError: GC overhead limit exceeded at java.util.Arrays.copyOf(Unknown Source) ~[?:1.8.0_211] at java.lang.AbstractStringBuilder.ensureCapacityInternal(Unknown Source) ~[?:1.8.0_211] at java.lang.AbstractStringBuilder.append(Unknown Source) ~[?:1.8.0_211] at java.lang.StringBuilder.append(Unknown Source) ~[?:1.8.0_211] at java.lang.StringBuilder.append(Unknown Source) ~[?:1.8.0_211] at simulators.DefaultSimulatorResultBeforeCondition.computeMonth(DefaultSimulatorResultBeforeCondition.java:450) ~[?:?] at simulators.DefaultSimulatorResultBeforeCondition.simulate(DefaultSimulatorResultBeforeCondition.java:259) ~[?:?] at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher.localSimulateSameThread(InProcessSimulatorLauncher.java:430) [isis-fish-4.4.2.2.jar:4.4.2.2] at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher$SimThread.run(InProcessSimulatorLauncher.java:260) [isis-fish-4.4.2.2.jar:4.4.2.2] ERROR|17:35:59,914|DriverManagerConnectionProviderImpl.java|332|close|Connection leak detected: there are 3 unclosed connections upon shutting down pool jdbc:h2:file:D:\isis-fish-4\isis-database\simulations\sim_MSYDerivationTest_2019-10-08-13-47_6\data\data;FILE_LOCK=file;LOG=1;AUTO_SERVER=TRUE;DEFAULT_LOCK_TIMEOUT=1000;DB_CLOSE_DELAY=0;LOCK_MODE=3;TRACE_LEVEL_FILE=0;TRACE_LEVEL_SYSTEM_OUT=0 ERROR|17:40:33,132|InProcessSimulatorLauncher.java|476|localSimulateSameThread|Error during simulation java.lang.OutOfMemoryError: Java heap space at java.util.Arrays.copyOfRange(Unknown Source) ~[?:1.8.0_211] at java.lang.StringBuffer.toString(Unknown Source) ~[?:1.8.0_211] at org.nuiton.math.matrix.BasicMatrix.toString(BasicMatrix.java:380) ~[nuiton-matrix-2.5.2.jar:2.5.2] at org.nuiton.math.matrix.MatrixNDImpl.toString(MatrixNDImpl.java:206) ~[nuiton-matrix-2.5.2.jar:2.5.2] at java.lang.String.valueOf(Unknown Source) ~[?:1.8.0_211] at java.lang.StringBuilder.append(Unknown Source) ~[?:1.8.0_211] at simulators.DefaultSimulatorResultBeforeCondition.computeMonth(DefaultSimulatorResultBeforeCondition.java:446) ~[?:?] at simulators.DefaultSimulatorResultBeforeCondition.simulate(DefaultSimulatorResultBeforeCondition.java:259) ~[?:?] at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher.localSimulateSameThread(InProcessSimulatorLauncher.java:430) [isis-fish-4.4.2.2.jar:4.4.2.2] at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher$SimThread.run(InProcessSimulatorLauncher.java:260) [isis-fish-4.4.2.2.jar:4.4.2.2] ERROR|17:40:33,148|DriverManagerConnectionProviderImpl.java|332|close|Connection leak detected: there are 3 unclosed connections upon shutting down pool jdbc:h2:file:D:\isis-fish-4\isis-database\simulations\sim_MSYDerivationTest_2019-10-08-13-47_13\data\data;FILE_LOCK=file;LOG=1;AUTO_SERVER=TRUE;DEFAULT_LOCK_TIMEOUT=1000;DB_CLOSE_DELAY=0;LOCK_MODE=3;TRACE_LEVEL_FILE=0;TRACE_LEVEL_SYSTEM_OUT=0 ERROR|17:35:59,883|InProcessSimulatorLauncher.java|476|localSimulateSameThread|Error during simulation java.lang.OutOfMemoryError: GC overhead limit exceeded at java.util.Arrays.copyOf(Unknown Source) ~[?:1.8.0_211] at java.lang.AbstractStringBuilder.ensureCapacityInternal(Unknown Source) ~[?:1.8.0_211] at java.lang.AbstractStringBuilder.append(Unknown Source) ~[?:1.8.0_211] at java.lang.StringBuilder.append(Unknown Source) ~[?:1.8.0_211] at java.lang.StringBuilder.append(Unknown Source) ~[?:1.8.0_211] at simulators.DefaultSimulatorResultBeforeCondition.computeMonth(DefaultSimulatorResultBeforeCondition.java:450) ~[?:?] at simulators.DefaultSimulatorResultBeforeCondition.simulate(DefaultSimulatorResultBeforeCondition.java:259) ~[?:?] at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher.localSimulateSameThread(InProcessSimulatorLauncher.java:430) [isis-fish-4.4.2.2.jar:4.4.2.2] at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher$SimThread.run(InProcessSimulatorLauncher.java:260) [isis-fish-4.4.2.2.jar:4.4.2.2] ERROR|17:35:59,914|DriverManagerConnectionProviderImpl.java|332|close|Connection leak detected: there are 3 unclosed connections upon shutting down pool jdbc:h2:file:D:\isis-fish-4\isis-database\simulations\sim_MSYDerivationTest_2019-10-08-13-47_6\data\data;FILE_LOCK=file;LOG=1;AUTO_SERVER=TRUE;DEFAULT_LOCK_TIMEOUT=1000;DB_CLOSE_DELAY=0;LOCK_MODE=3;TRACE_LEVEL_FILE=0;TRACE_LEVEL_SYSTEM_OUT=0

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Importation région version 4425 à 4443
by Charlotte Sève 07 Sep '20

07 Sep '20

Bonjour, Lorsque j'importe ma région de la version 4.4.2.5 à la version 4.4.4.3 de ISIS il y a des éléments qui ne se conservent pas dans ma paramétrisation (par exemple, les valeurs d'accessibilité sont remises à 0; pareil pour mes proportions de métiers) Je ne sais pas si ce problème a été rencontré par d'autres utilisateurs - en tous cas je n'ai pas trouvé de solution pour le moment. En plus, à chaque ouverture de région dans la 4.4.4.3, je dois remettre ces paramètres à la bonne valeur. Merci pour votre aide ! Bonne journée, Charlotte -- *Charlotte Sève*, PhD Student CRIOBE - USR 3278 (CNRS-EPHE-UPVD) Phone: +33 6 21 10 10 16 Skype: charlotteseve

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[ANN] - ISIS-Fish 4.4.5.0 released
by Eric Chatellier 28 Aug '20

28 Aug '20

The ISIS-Fish team is pleased to announce the isis-fish-4.4.5.0 release! Simulateur de pêcherie complexe. Documentation of the project can be found here: http://isis-fish.org Changes ------- Changes in this version includes: Anomalie #384: Problème d'encoding dans la console de log de simu Anomalie #5193: Les sous processus ne sont pas arrêtés lorsque l'on arrête une simulation ou que l'on ferme isis Anomalie #8336: Simplifier le changement de langue Anomalie #9110: calcul de MatrixGrossValueOfLandingsPerSpeciesPerStrategyMet Anomalie #10710: Can't cleanup working copy Anomalie #10723: Javadoc documentation tool is not working on jdk9+ Anomalie #10888: La restauration des paramètres d'une simulation ne fonctionne pas Evolution #403: Validation des noms de variable Evolution #408: Exportation d'une Simulation vers un Zip à la façon d'une région. Evolution #409: Validation des données. Evolution #412: Hiérarchie dans l'arbre des facteurs Evolution #413: Hiérarchie dans les listes déroulantes ou listes Evolution #418: Message d'alerte explicite pour OutOfMemoryError et DiskSpaceFull Evolution #422: Ajouter les exports de sensibilités dans l'interfaces des résultats Evolution #430: Mauvais liens vers les APIs dans l'interface d'édition d'équation Evolution #765: Add support to launch isis in command line with only mexico xml file Evolution #1786: Add JScrollPane on input interface for usability with small screen Evolution #3929: copier/coller des parametres des regles de gestion Evolution #5177: Duplication de règle Evolution #5779: Détecter les erreurs de configuration coté serveur (en cas de lancement impossible des simulations) Evolution #7197: Improve start time using parallels tasks Evolution #10307: Taille des popups de saisie de parametres Evolution #10679: Timer le temps de calcul des matrices et des equations Evolution #10755: Utilisation des noeuds FTP pour les transfert sur datarmor Evolution #10789: Improve simulation UI UX Downloads --------- For a manual installation, you can download files here: https://forge.codelutin.com/projects/isis-fish/files * https://forge.codelutin.com/attachments/download/6338/isis-fish-4.4.5.0-bin… Have fun! -ISIS-Fish team -- Éric Chatellier - www.codelutin.com - 02.40.50.29.28

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petite question linux
by slehuta 30 Jul '20

30 Jul '20

Bonjour je lance isis sur datarmor et je souhaite effacer les simus stoquees sur datarmor une fois que j'ai fini de travailler avec. Je le fais pour le moment en accedant au disque dans un explorateur windows comme je le ferais en local mais c'est tres long. je ne trouve pas la commande pour effacer l ensemble des dossiers non vides ayant un morceau de nom donné... pouvez vous m indiquer la commande ? quelque chose comme : find -name "testMpiLaunch_*" -rmRf renvoit "find: unknown predicate `-rmRf'" ... Merci !

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Ressources Isis-fish
by Postmaster ISIS-Fish 30 Jun '20

30 Jun '20

Amis utilisateurs d'ISIS-Fish, Ce mail automatique, envoyé tous les 3 mois sur les listes de diffusions du projet, a pour but de vous rappeler toutes les ressources disponibles pour toutes vos éventuelles questions et problèmes. Documentation et manuel utilisateurs ------------------------------------ La documentation d'ISIS-Fish est présente sur le site à cette adresse : http://isis-fish.org/index.html. N'hésitez pas à nous remonter les parties qui ne sont pas claires ou les parties qui ne sont pas à jour, le logiciel évoluant, certaines parties de la documentation sont peut-être obsolètes. Questions et FAQ ---------------- Vous pouvez poser vos questions à cette même liste de diffusion en envoyant un mail à isis-fish-users(a)list.isis-fish.org. Toutes les personnes abonnées le recevront et pourront répondre à vos éventuelles questions. N'oubliez pas, avant de poser votre question, de rechercher parmis les archives de la liste (http://list.isis-fish.org/pipermail/isis-fish-users/) votre question a peut-être déjà été posée. Les questions les plus fréquemment posées sont regroupées sur le site sur la page FAQ : http://isis-fish.org/v4/user/FAQ.html Forge, rapports de bug, suivi des évolutions -------------------------------------------- Si vous rencontrez un bug, vous pouvez vérifier sur la forge ISIS-Fish (http://forge.codelutin.com/projects/isis-fish/issues) si nous en avons déjà connaissance. Si nous n'en avons pas connaissance, vous pouvez nous rapporter le bug, nous l'intègrerons dans la liste des évolutions prévues (http://forge.codelutin.com/projects/isis-fish/roadmap) Pour rapporter un bug (ou une demande d'évolution), donnez nous le maximum de détails sur ce bug (comment vous l'avez obtenu ? votre base, vos paramètres et le fichier debug.txt). Plus nous avons d'informations, plus nous pourrons vous aider simplement. L'équipe ISIS-Fish

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restaurer les parametres d une simulation
by slehuta 17 Jun '20

17 Jun '20

Bonjour bonjour j ai tenter de sauver en txt puis restaurer les parametres d une simulation, optionqui parait tres pratique. cela a échoué avec cette erreur au moment de la restauration. Merci javax.persistence.PersistenceException: org.hibernate.exception.SQLGrammarException: could not prepare statement at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:149) at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:157) at org.hibernate.query.internal.AbstractProducedQuery.list(AbstractProducedQuery.java:1423) at org.nuiton.topia.framework.TopiaContextImpl.findAll(TopiaContextImpl.java:954) at org.nuiton.topia.framework.TopiaQuery.execute(TopiaQuery.java:1388) at org.nuiton.topia.framework.TopiaQuery.executeToEntityList(TopiaQuery.java:1408) at org.nuiton.topia.persistence.TopiaDAOImpl.findAllByQuery(TopiaDAOImpl.java:480) at org.nuiton.topia.persistence.TopiaDAOImpl.findAll(TopiaDAOImpl.java:441) at fr.ifremer.isisfish.datastore.RegionStorage.getFisheryRegion(RegionStorage.java:376) at fr.ifremer.isisfish.ui.simulator.ParamsHandler.getStrategies(ParamsHandler.java:737) at fr.ifremer.isisfish.ui.simulator.ParamsHandler.setListSimulParamsStrategiesItems(ParamsHandler.java:624) at fr.ifremer.isisfish.ui.simulator.ParamsHandler.refresh(ParamsHandler.java:155) at fr.ifremer.isisfish.ui.simulator.SimulUI.refresh(SimulUI.java:90) at fr.ifremer.isisfish.ui.SimulationHandler.importSimulation(SimulationHandler.java:88) at fr.ifremer.isisfish.ui.SimulationUI.doActionPerformed__on__miImport(SimulationUI.java:324) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at jaxx.runtime.JAXXUtil$1.invoke(JAXXUtil.java:253) at com.sun.proxy.$Proxy19.actionPerformed(Unknown Source) at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.setPressed(Unknown Source) at javax.swing.AbstractButton.doClick(Unknown Source) at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source) at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown Source) at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source) at java.awt.Component.processMouseEvent(Unknown Source) at javax.swing.JComponent.processMouseEvent(Unknown Source) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Window.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$500(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) Caused by: org.hibernate.exception.SQLGrammarException: could not prepare statement at org.hibernate.exception.internal.SQLStateConversionDelegate.convert(SQLStateConversionDelegate.java:106) at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:42) at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:111) at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$StatementPreparationTemplate.prepareStatement(StatementPreparerImpl.java:182) at org.hibernate.engine.jdbc.internal.StatementPreparerImpl.prepareQueryStatement(StatementPreparerImpl.java:148) at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1985) at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1915) at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1893) at org.hibernate.loader.Loader.doQuery(Loader.java:938) at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:341) at org.hibernate.loader.Loader.doList(Loader.java:2692) at org.hibernate.loader.Loader.doList(Loader.java:2675) at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2507) at org.hibernate.loader.Loader.list(Loader.java:2502) at org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:502) at org.hibernate.hql.internal.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:392) at org.hibernate.engine.query.spi.HQLQueryPlan.performList(HQLQueryPlan.java:216) at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1490) at org.hibernate.query.internal.AbstractProducedQuery.doList(AbstractProducedQuery.java:1445) at org.hibernate.query.internal.AbstractProducedQuery.list(AbstractProducedQuery.java:1414) ... 57 more Caused by: org.h2.jdbc.JdbcSQLException: Table "FISHERYREGION" non trouvée Table "FISHERYREGION" not found; SQL statement: select fisheryreg0_.topiaId as topiaId1_5_, fisheryreg0_.topiaVersion as topiaVer2_5_, fisheryreg0_.topiaCreateDate as topiaCre3_5_, fisheryreg0_.name as name4_5_, fisheryreg0_.minLongitude as minLongi5_5_, fisheryreg0_.maxLongitude as maxLongi6_5_, fisheryreg0_.minLatitude as minLatit7_5_, fisheryreg0_.maxLatitude as maxLatit8_5_, fisheryreg0_.cellLengthLongitude as cellLeng9_5_, fisheryreg0_.cellLengthLatitude as cellLen10_5_, fisheryreg0_.mapFiles as mapFile11_5_, fisheryreg0_.comment as comment12_5_ from fisheryRegion fisheryreg0_ [42102-197] at org.h2.message.DbException.getJdbcSQLException(DbException.java:357) at org.h2.message.DbException.get(DbException.java:179) at org.h2.message.DbException.get(DbException.java:155) at org.h2.command.Parser.readTableOrView(Parser.java:5920) at org.h2.command.Parser.readTableFilter(Parser.java:1430) at org.h2.command.Parser.parseSelectSimpleFromPart(Parser.java:2138) at org.h2.command.Parser.parseSelectSimple(Parser.java:2287) at org.h2.command.Parser.parseSelectSub(Parser.java:2133) at org.h2.command.Parser.parseSelectUnion(Parser.java:1946) at org.h2.command.Parser.parseSelect(Parser.java:1919) at org.h2.command.Parser.parsePrepared(Parser.java:463) at org.h2.command.Parser.parse(Parser.java:335) at org.h2.command.Parser.parse(Parser.java:307) at org.h2.command.Parser.prepareCommand(Parser.java:278) at org.h2.engine.Session.prepareLocal(Session.java:611) at org.h2.engine.Session.prepareCommand(Session.java:549) at org.h2.jdbc.JdbcConnection.prepareCommand(JdbcConnection.java:1247) at org.h2.jdbc.JdbcPreparedStatement. (JdbcPreparedStatement.java:76) at org.h2.jdbc.JdbcConnection.prepareStatement(JdbcConnection.java:304) at com.zaxxer.hikari.pool.ProxyConnection.prepareStatement(ProxyConnection.java:310) at com.zaxxer.hikari.pool.HikariProxyConnection.prepareStatement(HikariProxyConnection.java) at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$5.doPrepare(StatementPreparerImpl.java:146) at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$StatementPreparationTemplate.prepareStatement(StatementPreparerImpl.java:172) ... 73 more

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[ANN] - ISIS-Fish 4.4.4.3 released
by Eric Chatellier 15 May '20

15 May '20

The ISIS-Fish team is pleased to announce the isis-fish-4.4.4.3 release! Simulateur de pêcherie complexe. Documentation of the project can be found here: http://isis-fish.org Changes ------- Changes in this version includes: Anomalie #10835: Retrograder la version de H2 Downloads --------- For a manual installation, you can download files here: https://forge.codelutin.com/projects/isis-fish/files * https://forge.codelutin.com/attachments/download/6171/isis-fish-4.4.4.3-bin… Have fun! -ISIS-Fish team -- Éric Chatellier - www.codelutin.com - 02.40.50.29.28

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erreur en rechargeant une ancienne simu (V4.4.2.5) dans la version 4.4.4.1
by Sigrid LEHUTA 15 May '20

15 May '20

org.hibernate.service.spi.ServiceException: Unable to create requested service [org.hibernate.engine.jdbc.env.spi.JdbcEnvironment] at org.hibernate.service.internal.AbstractServiceRegistryImpl.createService(AbstractServiceRegistryImpl.java:275) at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:237) at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:214) at org.hibernate.id.factory.internal.DefaultIdentifierGeneratorFactory.injectServices(DefaultIdentifierGeneratorFactory.java:152) at org.hibernate.service.internal.AbstractServiceRegistryImpl.injectDependencies(AbstractServiceRegistryImpl.java:286) at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:243) at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:214) at org.hibernate.boot.internal.InFlightMetadataCollectorImpl. (InFlightMetadataCollectorImpl.java:175) at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.complete(MetadataBuildingProcess.java:118) at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.build(MetadataBuildingProcess.java:83) at org.hibernate.boot.internal.MetadataBuilderImpl.build(MetadataBuilderImpl.java:473) at org.hibernate.boot.internal.MetadataBuilderImpl.build(MetadataBuilderImpl.java:84) at org.nuiton.topia.migration.TopiaMigrationEngine.preInit(TopiaMigrationEngine.java:244) at org.nuiton.topia.framework.TopiaContextImpl.preInitServices(TopiaContextImpl.java:270) at org.nuiton.topia.framework.TopiaContextImpl. (TopiaContextImpl.java:222) at org.nuiton.topia.TopiaContextFactory.getContext(TopiaContextFactory.java:182) at fr.ifremer.isisfish.datastore.DataStorage.getStorage(DataStorage.java:223) at fr.ifremer.isisfish.ui.simulator.ParamsHandler.regionChange(ParamsHandler.java:176) at fr.ifremer.isisfish.ui.simulator.ParamsHandler.lambda$regionChange$1(ParamsHandler.java:260) at java.awt.event.InvocationEvent.dispatch(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$500(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.WaitDispatchSupport$2.run(Unknown Source) at java.awt.WaitDispatchSupport$4.run(Unknown Source) at java.awt.WaitDispatchSupport$4.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.awt.WaitDispatchSupport.enter(Unknown Source) at java.awt.Dialog.show(Unknown Source) at java.awt.Component.show(Unknown Source) at java.awt.Component.setVisible(Unknown Source) at java.awt.Window.setVisible(Unknown Source) at java.awt.Dialog.setVisible(Unknown Source) at org.jdesktop.swingx.JXErrorPane$1.run(JXErrorPane.java:398) at org.jdesktop.swingx.JXErrorPane.showDialog(JXErrorPane.java:411) at fr.ifremer.isisfish.util.ErrorHelper.showErrorDialog(ErrorHelper.java:76) at fr.ifremer.isisfish.IsisFish.lambda$null$0(IsisFish.java:689) at java.lang.ThreadGroup.uncaughtException(Unknown Source) at java.lang.ThreadGroup.uncaughtException(Unknown Source) at java.awt.EventDispatchThread.processException(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) Caused by: org.hibernate.HibernateException: com.zaxxer.hikari.pool.HikariPool$PoolInitializationException: Failed to initialize pool: Erreur générale: "java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6]" General error: "java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6]" [50000-200] at org.hibernate.hikaricp.internal.HikariCPConnectionProvider.configure(HikariCPConnectionProvider.java:63) at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.configureService(StandardServiceRegistryImpl.java:107) at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:246) at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:214) at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.buildJdbcConnectionAccess(JdbcEnvironmentInitiator.java:145) at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:66) at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:35) at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.initiateService(StandardServiceRegistryImpl.java:101) at org.hibernate.service.internal.AbstractServiceRegistryImpl.createService(AbstractServiceRegistryImpl.java:263) ... 52 more Caused by: com.zaxxer.hikari.pool.HikariPool$PoolInitializationException: Failed to initialize pool: Erreur générale: "java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6]" General error: "java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6]" [50000-200] at com.zaxxer.hikari.pool.HikariPool.throwPoolInitializationException(HikariPool.java:576) at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:562) at com.zaxxer.hikari.pool.HikariPool. (HikariPool.java:115) at com.zaxxer.hikari.HikariDataSource. (HikariDataSource.java:81) at org.hibernate.hikaricp.internal.HikariCPConnectionProvider.configure(HikariCPConnectionProvider.java:59) ... 60 more Caused by: org.h2.jdbc.JdbcSQLNonTransientException: Erreur générale: "java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6]" General error: "java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6]" [50000-200] at org.h2.message.DbException.getJdbcSQLException(DbException.java:505) at org.h2.message.DbException.getJdbcSQLException(DbException.java:429) at org.h2.message.DbException.get(DbException.java:194) at org.h2.message.DbException.convert(DbException.java:347) at org.h2.engine.Database.openDatabase(Database.java:333) at org.h2.engine.Database. (Database.java:301) at org.h2.engine.Engine.openSession(Engine.java:74) at org.h2.engine.Engine.openSession(Engine.java:192) at org.h2.engine.Engine.createSessionAndValidate(Engine.java:171) at org.h2.engine.Engine.createSession(Engine.java:166) at org.h2.engine.Engine.createSession(Engine.java:29) at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:340) at org.h2.jdbc.JdbcConnection. (JdbcConnection.java:173) at org.h2.jdbc.JdbcConnection. (JdbcConnection.java:152) at org.h2.Driver.connect(Driver.java:69) at com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:136) at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:369) at com.zaxxer.hikari.pool.PoolBase.newPoolEntry(PoolBase.java:198) at com.zaxxer.hikari.pool.HikariPool.createPoolEntry(HikariPool.java:467) at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:541) ... 63 more Caused by: java.lang.IllegalStateException: Unable to read the page at position 824663412361 [1.4.200/6] at org.h2.mvstore.DataUtils.newIllegalStateException(DataUtils.java:950) at org.h2.mvstore.MVStore.readPage(MVStore.java:2213) at org.h2.mvstore.MVMap.readPage(MVMap.java:672) at org.h2.mvstore.MVMap.readOrCreateRootPage(MVMap.java:688) at org.h2.mvstore.MVMap.setRootPos(MVMap.java:682) at org.h2.mvstore.MVStore.openMap(MVStore.java:576) at org.h2.mvstore.MVStore.openMap(MVStore.java:535) at org.h2.mvstore.MVStore.openMap(MVStore.java:516) at org.h2.mvstore.MVStore.removeMap(MVStore.java:2742) at org.h2.engine.Database.handleUpgradeIssues(Database.java:866) at org.h2.engine.Database.open(Database.java:742) at org.h2.engine.Database.openDatabase(Database.java:307) ... 78 more Caused by: java.lang.IllegalStateException: Unsupported type 17 [1.4.200/3] at org.h2.mvstore.DataUtils.newIllegalStateException(DataUtils.java:950) at org.h2.mvstore.type.ObjectDataType.newType(ObjectDataType.java:165) at org.h2.mvstore.type.ObjectDataType.read(ObjectDataType.java:229) at org.h2.mvstore.type.ObjectDataType.read(ObjectDataType.java:114) at org.h2.mvstore.Page.read(Page.java:605) at org.h2.mvstore.Page.read(Page.java:239) at org.h2.mvstore.MVStore.readPage(MVStore.java:2211) ... 88 more -- NB : Please note that I do not work on Monday mornings and Wednesday afternoons Sigrid LEHUTA ~ ><> ~ Ecologie et Modèles pour l'Halieutique IFREMER Nantes Rue de l'Ile d'Yeu - BP 21105, 44311 Nantes Cedex 03, France Tél : 02 40 37 42 38 (N° interne : 8238) Membre de l'Association Française d'Halieutique https://www.association-francaise-halieutique.fr/

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ISIS-4.4.2.5 probleme importation
by Charlotte Sève 11 May '20

11 May '20

Bonjour ! J'aurais besoin d'un petit coup de pouce. J'essaye de faire tourner ISIS sur le serveur de mon laboratoire et je n'arrive pas à importer une région que j'ai construite sur mon ordinateur. Est-ce que quelqu'un aurait une idée du problème ? Voilà le message d'erreur : java.lang.RuntimeException: java.lang.reflect.InvocationTargetException at jaxx.runtime.JAXXUtil$1.invoke(JAXXUtil.java:260) at com.sun.proxy.$Proxy19.actionPerformed(Unknown Source) at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.setPressed(Unknown Source) at javax.swing.AbstractButton.doClick(Unknown Source) at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source) at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown Source) at java.awt.Component.processMouseEvent(Unknown Source) at javax.swing.JComponent.processMouseEvent(Unknown Source) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Window.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$500(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at jaxx.runtime.JAXXUtil$1.invoke(JAXXUtil.java:253) ... 39 more Caused by: fr.ifremer.isisfish.IsisFishRuntimeException: Impossible d'importer la région at fr.ifremer.isisfish.ui.input.InputHandler.importRegionAndRename(InputHandler.java:323) at fr.ifremer.isisfish.ui.input.InputUI.doActionPerformed__on__menuRegionImportRename(InputUI.java:315) ... 44 more Caused by: fr.ifremer.isisfish.datastore.StorageException: Can't import file C:\Users\cseve\Desktop\sar_gdl_v2_v4.4.2.5.zip at fr.ifremer.isisfish.datastore.RegionStorage.importAndRenameZip(RegionStorage.java:450) at fr.ifremer.isisfish.ui.input.InputHandler.importRegionAndRename(InputHandler.java:318) ... 45 more Caused by: org.nuiton.topia.TopiaException: topia.persistence.error.on.restore at org.nuiton.topia.framework.TopiaContextImpl.restore(TopiaContextImpl.java:1207) at fr.ifremer.isisfish.datastore.RegionStorage.importAndRenameZip(RegionStorage.java:427) ... 46 more Caused by: org.hibernate.exception.SQLGrammarException: could not execute statement at org.hibernate.exception.internal.SQLStateConversionDelegate.convert(SQLStateConversionDelegate.java:106) at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:42) at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:111) at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:97) at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:178) at org.hibernate.engine.query.spi.NativeSQLQueryPlan.performExecuteUpdate(NativeSQLQueryPlan.java:204) at org.hibernate.internal.SessionImpl.executeNativeUpdate(SessionImpl.java:1575) at org.hibernate.query.internal.NativeQueryImpl.doExecuteUpdate(NativeQueryImpl.java:274) at org.hibernate.query.internal.AbstractProducedQuery.executeUpdate(AbstractProducedQuery.java:1504) at org.nuiton.topia.framework.TopiaContextImpl.restore(TopiaContextImpl.java:1202) ... 47 more Caused by: org.h2.jdbc.JdbcSQLException: La table "ACTIVERULE" existe déjà Table "ACTIVERULE" already exists; SQL statement: CREATE CACHED TABLE PUBLIC.ACTIVERULE( TOPIAID VARCHAR(255) NOT NULL, TOPIAVERSION BIGINT NOT NULL, TOPIACREATEDATE TIMESTAMP, ACTIVERULESTEP INTEGER, NAME VARCHAR(2147483647), PARAM VARCHAR(2147483647) ) [42101-197] at org.h2.message.DbException.getJdbcSQLException(DbException.java:357) at org.h2.message.DbException.get(DbException.java:179) at org.h2.message.DbException.get(DbException.java:155) at org.h2.command.ddl.CreateTable.update(CreateTable.java:86) at org.h2.command.dml.RunScriptCommand.execute(RunScriptCommand.java:79) at org.h2.command.dml.RunScriptCommand.update(RunScriptCommand.java:58) at org.h2.command.CommandContainer.update(CommandContainer.java:102) at org.h2.command.Command.executeUpdate(Command.java:261) at org.h2.jdbc.JdbcPreparedStatement.executeUpdateInternal(JdbcPreparedStatement.java:199) at org.h2.jdbc.JdbcPreparedStatement.executeUpdate(JdbcPreparedStatement.java:153) at com.zaxxer.hikari.pool.ProxyPreparedStatement.executeUpdate(ProxyPreparedStatement.java:61) at com.zaxxer.hikari.pool.HikariProxyPreparedStatement.executeUpdate(HikariProxyPreparedStatement.java) at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:175) ... 52 more Merci beaucoup et bonne soirée, Charlotte -- *Charlotte Sève*, PhD Student CRIOBE - USR 3278 (CNRS-EPHE-UPVD) Phone: +33 6 21 10 10 16 Skype: charlotteseve

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